Annotations: 8HX1

Focused cryo-EM map of MsDps2 from MsDps2-DNA complex of Mycobacterium smegmatis

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	Ferritin-like	8075814	3001658	SCOP2B (2022-06-29)
K [auth J]	SCOP2B Superfamily	Ferritin-like	8075814	3001658	SCOP2B (2022-06-29)
J [auth H]	SCOP2B Superfamily	Ferritin-like	8075814	3001658	SCOP2B (2022-06-29)
I [auth F]	SCOP2B Superfamily	Ferritin-like	8075814	3001658	SCOP2B (2022-06-29)
H [auth K]	SCOP2B Superfamily	Ferritin-like	8075814	3001658	SCOP2B (2022-06-29)
G [auth I]	SCOP2B Superfamily	Ferritin-like	8075814	3001658	SCOP2B (2022-06-29)
F [auth G]	SCOP2B Superfamily	Ferritin-like	8075814	3001658	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Ferritin-like	8075814	3001658	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ferritin-like	8075814	3001658	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ferritin-like	8075814	3001658	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ferritin-like	8075814	3001658	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Ferritin-like	8075814	3001658	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	MIF4G	e8hx1L1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
K [auth J]	MIF4G	e8hx1J1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
J [auth H]	MIF4G	e8hx1H1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
I [auth F]	MIF4G	e8hx1F1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
H [auth K]	MIF4G	e8hx1K1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
G [auth I]	MIF4G	e8hx1I1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
F [auth G]	MIF4G	e8hx1G1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
E	MIF4G	e8hx1E1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
D	MIF4G	e8hx1D1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
C	MIF4G	e8hx1C1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
B	MIF4G	e8hx1B1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
A	MIF4G	e8hx1A1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E, A, B, C, D, E, F [auth G], G [auth I], H [auth K], I [auth F], J [auth H], K [auth J], L	PF00210	Ferritin-like domain (Ferritin)	Ferritin-like domain	This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E, A, B, C, D, E, F [auth G], G [auth I], H [auth K], I [auth F], J [auth H], K [auth J], L	Putative starvation-induced DNA protecting protein/Ferritin and Dps	DNA binding binding nucleic acid binding oxidoreductase activity, acting on metal ions oxidoreductase activity catalytic activity cation binding ferric iron binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E, A, B, C, D, E, F [auth G], G [auth I], H [auth K], I [auth F], J [auth H], K [auth J], L	IPR012347	Ferritin-like	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F [auth G], G [auth I], H [auth K], I [auth F], J [auth H], K [auth J], L	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F [auth G], G [auth I], H [auth K], I [auth F], J [auth H], K [auth J], L	IPR002177	DNA-binding protein Dps	Family
A, B, C, D, E, A, B, C, D, E, F [auth G], G [auth I], H [auth K], I [auth F], J [auth H], K [auth J], L	IPR008331	Ferritin/DPS domain	Domain
A, B, C, D, E, A, B, C, D, E, F [auth G], G [auth I], H [auth K], I [auth F], J [auth H], K [auth J], L	IPR023188	DNA-binding protein Dps, conserved site	Conserved Site

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.