Annotations: 8IXK

bottom segment of the bacteriophage M13 mini variant

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
X	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
S [auth N]	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
R [auth M]	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
Q [auth L]	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
N [auth I]	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
M [auth H]	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
L [auth G]	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
I [auth D]	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
H [auth C]	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
G [auth B]	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
D [auth S]	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
C [auth Q]	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)
B [auth P]	SCOP2B Superfamily	Inovirus (filamentous phage) major coat protein	8039508	3001666	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
U [auth T]	DNA_topoisoIV	e8ixkT1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
P [auth K]	DNA_topoisoIV	e8ixkK1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
K [auth F]	DNA_topoisoIV	e8ixkF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
F [auth A]	DNA_topoisoIV	e8ixkA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
A [auth R]	DNA_topoisoIV	e8ixkR1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
E [auth Z], J [auth E], O [auth J], T [auth O], Y	PF17537	Family of unknown function (DUF5455) (DUF5455)	Family of unknown function (DUF5455)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth Z], J [auth E], O [auth J], T [auth O], Y	Head virion protein G6P	-	biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	host cellular component cellular anatomical structure host cell part host cell membrane other organism part virion component
B [auth P], C [auth Q], D [auth S], G [auth B], H [auth C], B [auth P], C [auth Q], D [auth S], G [auth B], H [auth C], I [auth D], L [auth G], M [auth H], N [auth I], Q [auth L], R [auth M], S [auth N], V, W, X	Capsid protein G8P	-	-	host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part viral capsid virion component helical viral capsid
A [auth R], F [auth A], K [auth F], P [auth K], U [auth T]	Attachment protein G3P	-	virion attachment to host cell biological process involved in interspecies interaction between organisms receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host adhesion receptor-mediated virion attachment to host cell biological process involved in interaction with host biological process involved in symbiotic interaction exit from host cell non-lytic viral release viral extrusion viral release from host cell virion attachment to host cell biological process involved in interspecies interaction between organisms receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host adhesion receptor-mediated virion attachment to host cell biological process involved in interaction with host biological process involved in symbiotic interaction exit from host cell non-lytic viral release viral extrusion viral release from host cell entry receptor-mediated virion attachment to host cell virion attachment to host cell pilus symbiont entry into host cell symbiont entry into host	viral capsid virion component host cellular component cellular anatomical structure host cell part host cell membrane other organism part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth Z], J [auth E], O [auth J], T [auth O], Y	IPR035210	Protein of unknown function DUF5455	Family
B [auth P], C [auth Q], D [auth S], G [auth B], H [auth C], B [auth P], C [auth Q], D [auth S], G [auth B], H [auth C], I [auth D], L [auth G], M [auth H], N [auth I], Q [auth L], R [auth M], S [auth N], V, W, X	IPR008020	Capsid protein G8P	Family
B [auth P], C [auth Q], D [auth S], G [auth B], H [auth C], B [auth P], C [auth Q], D [auth S], G [auth B], H [auth C], I [auth D], L [auth G], M [auth H], N [auth I], Q [auth L], R [auth M], S [auth N], V, W, X	IPR023390	Bacteriophage M13, G8P, capsid domain superfamily	Homologous Superfamily
A [auth R], F [auth A], K [auth F], P [auth K], U [auth T]	IPR036200	Attachment protein G3P, N-terminal domain superfamily	Homologous Superfamily
A [auth R], F [auth A], K [auth F], P [auth K], U [auth T]	IPR013834	Bacteriophage, G3P, N2-domain superfamily	Homologous Superfamily
A [auth R], F [auth A], K [auth F], P [auth K], U [auth T]	IPR008021	Attachment protein G3P, N-terminal	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.