8J9H | pdb_00008j9h

Cryo-EM structure of Euglena gracilis respiratory complex I, deactive state

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth 1A]	V-set	e8j9h1A1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
F [auth A2]	V-set	e8j9hA21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
H [auth A5]	V-set	e8j9hA51	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
L [auth A9]	V-set	e8j9hA91	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
M [auth AB]	V-set	e8j9hAB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
BA [auth E1]	V-set	e8j9hE11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
DA [auth E3]	Frizzled	e8j9hE301	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Frizzled	ECOD (v295)
EA [auth E4]	V-set	e8j9hE41	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
FA [auth E5]	V-set	e8j9hE51	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
KA [auth EC]	V-set	e8j9hEC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
OA [auth G2]	V-set	e8j9hG21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
QA [auth N1]	V-set	e8j9hN11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
WA [auth S2]	V-set	e8j9hS21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
XA [auth S3]	V-set	e8j9hS31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
CB [auth S8]	V-set	e8j9hS81	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
FB [auth V1]	V-set	e8j9hV11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
IB [auth AC]	V-set	e8j9hAC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
UA [auth N5]	V-set	e8j9hN51	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 1A]	NDUS1A	-	-	-
B [auth 1B]	NDUS1B	-	-	-
C [auth 2B]	NADH dehydrogenase subunit 5	-	-	-
D [auth 4L]	ND4L	-	-	-
E [auth A1]	NDUFA1	-	-	-
F [auth A2]	NDUFA2	-	-	-
G [auth A3]	NDUFA3	-	-	-
H [auth A5]	NDUFA5	-	-	-
I [auth A6]	NDUFA6	-	-	-
J [auth A7]	NDUFA7	-	-	-
L [auth A9]	NDUFA9	-	-	-
M [auth AB]	NDUFAB1-alpha	-	-	-
N [auth AL]	NDUFA12	-	-	-
P [auth AN]	NDUFA11	-	-	-
Q [auth B2]	NDUFB2	-	-	-
R [auth B3]	NDUFB3	-	-	-
S [auth B4]	NDUFB4	-	-	-
V [auth B7]	NDUFB7	-	-	-
X [auth B9]	NDUFB9	-	-	-
Y [auth BL]	NDUFB10	-	-	-
Z [auth BM]	NDUFB11	-	-	-
AA [auth C4]	NDUFC2	-	-	-
BA [auth E1]	NDUEG1	-	-	-
CA [auth E2]	NDUEG2	-	-	-
DA [auth E3]	NDUEG3	-	-	-
EA [auth E4]	NDUEG4	-	-	-
FA [auth E5]	NDUEG5	-	-	-
HA [auth E8]	NDUEG8	-	-	-
IA [auth EA]	NDUEG10	-	-	-
JA [auth EB]	NDUEG11	-	-	-
KA [auth EC]	NDUEG12	-	-	-
LA [auth ED]	NDUEG13	-	-	-
MA [auth FX]	NDUFX	-	-	-
NA [auth G1]	NDUCA1	-	-	-
OA [auth G2]	NDUCA2	-	-	-
PA [auth G3]	NDUCA3	-	-	-
QA [auth N1]	ND1	-	-	-
RA [auth N2]	ND2A	-	-	-
SA [auth N3], VA [auth N6]	ND3	-	-	-
TA [auth N4]	NADH-ubiquinone oxidoreductase chain 4	binding quinone binding ubiquinone binding small molecule binding oxidoreductase activity oxidoreductase activity, acting on NAD(P)H catalytic activity NADH dehydrogenase activity monoatomic cation transmembrane transporter activity proton transmembrane transporter activity primary active transmembrane transporter activity oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor electron transfer activity active monoatomic ion transmembrane transporter activity binding quinone binding ubiquinone binding small molecule binding oxidoreductase activity oxidoreductase activity, acting on NAD(P)H catalytic activity NADH dehydrogenase activity monoatomic cation transmembrane transporter activity proton transmembrane transporter activity primary active transmembrane transporter activity oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor electron transfer activity active monoatomic ion transmembrane transporter activity NADH dehydrogenase (ubiquinone) activity oxidoreduction-driven active transmembrane transporter activity active transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity	aerobic respiration cellular respiration oxidative phosphorylation energy derivation by oxidation of organic compounds respiratory electron transport chain ATP synthesis coupled electron transport electron transport chain metabolic process cellular process generation of precursor metabolites and energy electron transport coupled proton transport transport proton transmembrane transport monoatomic ion transmembrane transport aerobic respiration cellular respiration oxidative phosphorylation energy derivation by oxidation of organic compounds respiratory electron transport chain ATP synthesis coupled electron transport electron transport chain metabolic process cellular process generation of precursor metabolites and energy electron transport coupled proton transport transport proton transmembrane transport monoatomic ion transmembrane transport establishment of localization monoatomic cation transmembrane transport transmembrane transport localization energy coupled proton transmembrane transport, against electrochemical gradient monoatomic ion transport monoatomic cation transport	membrane-bounded organelle mitochondrial membrane intracellular anatomical structure mitochondrion membrane intracellular membrane-bounded organelle intracellular organelle organelle envelope cellular anatomical structure organelle mitochondrial envelope cytoplasm organelle membrane
WA [auth S2]	NDUFS2	-	-	-
XA [auth S3]	NDUFS3	-	-	-
YA [auth S4]	NDUFS4	-	-	-
ZA [auth S5]	NDUFS5	-	-	-
AB [auth S6]	NDUFS6	-	-	-
CB [auth S8]	NDUFS8	-	-	-
DB [auth U1], EB [auth U2]	UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK	-	-	-
FB [auth V1]	NDUFV1	-	-	-
GB [auth V2]	NDUFV2	-	-	-
IB [auth AC]	NDUFAB1-beta	-	-	-
HB [auth E7]	NDUEG7	-	-	-
BB [auth S7]	NDUFS7	-	-	-
UA [auth N5]	ND5	-	-	-
GA [auth E6]	NDUEG6	-	-	-
W [auth B8]	NDUFB8	-	-	-
U [auth B6]	NDUFB6	-	-	-
T [auth B5]	NDUFB5	-	-	-
O [auth AM]	NDUFA13	-	-	-
K [auth A8]	NDUFA8	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
TA [auth N4]	IPR003918	NADH:ubiquinone oxidoreductase	Family
TA [auth N4]	IPR001750	NADH:quinone oxidoreductase/Mrp antiporter, transmembrane domain	Domain

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
C [auth 2B]	UNK
R [auth B3]	UNK
Z [auth BM]	UNK
IA [auth EA]	UNK
JA [auth EB]	UNK
PA [auth G3]	UNK
WA [auth S2]	2MR	Parent Component: ARG : AA0067 : symmetric dimethyl-L-arginine MOD:00076
ZA [auth S5]	UNK	: AA0067
DB [auth U1], EB [auth U2]	UNK	: AA0067
GB [auth V2]	UNK	: AA0067
BB [auth S7]	UNK	: AA0067
T [auth B5]	UNK	: AA0067

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.