8J9J | pdb_00008j9j

Cryo-EM structure of Euglena gracilis complex I, NADH state

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H [auth A5]	DNA_topoisoIV	e8j9jA51	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
F [auth A2]	DNA_topoisoIV	e8j9jA21	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
GB [auth V1]	DNA_topoisoIV	e8j9jV11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
DB [auth S8]	DNA_topoisoIV	e8j9jS81	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
YA [auth S3]	DNA_topoisoIV	e8j9jS31	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
XA [auth S2]	DNA_topoisoIV	e8j9jS21	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
VA [auth N5]	DNA_topoisoIV	e8j9jN51	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
RA [auth N1]	DNA_topoisoIV	e8j9jN11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
PA [auth G2]	DNA_topoisoIV	e8j9jG21	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
LA [auth EC]	DNA_topoisoIV	e8j9jEC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
GA [auth E5]	DNA_topoisoIV	e8j9jE51	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
FA [auth E4]	DNA_topoisoIV	e8j9jE41	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
EA [auth E3]	DNA_topoisoIV	e8j9jE31	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
CA [auth E1]	DNA_topoisoIV	e8j9jE11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
N [auth AC]	DNA_topoisoIV	e8j9jAC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
M [auth AB]	DNA_topoisoIV	e8j9jAB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
L [auth A9]	DNA_topoisoIV	e8j9jA91	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
A [auth 1A]	DNA_topoisoIV	e8j9j1A1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I [auth A6]	NDUFA6	-	-	-
H [auth A5]	NDUFA5	-	-	-
G [auth A3]	NDUFA3	-	-	-
F [auth A2]	NDUFA2	-	-	-
IB [auth E7]	NDUEG7	-	-	-
HB [auth V2]	NDUFV2	-	-	-
GB [auth V1]	NDUFV1	-	-	-
EB [auth U1], FB [auth U2]	UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK	-	-	-
DB [auth S8]	NDUFS8	-	-	-
CB [auth S7]	NDUFS7	-	-	-
BB [auth S6]	NDUFS6	-	-	-
AB [auth S5]	NDUFS5	-	-	-
ZA [auth S4]	NDUFS4	-	-	-
YA [auth S3]	NDUFS3	-	-	-
E [auth A1]	NDUFA1	-	-	-
XA [auth S2]	NDUFS2	-	-	-
VA [auth N5]	ND5	-	-	-
UA [auth N4]	NADH-ubiquinone oxidoreductase chain 4	binding quinone binding ubiquinone binding small molecule binding oxidoreductase activity oxidoreductase activity, acting on NAD(P)H catalytic activity NADH dehydrogenase activity monoatomic cation transmembrane transporter activity proton transmembrane transporter activity primary active transmembrane transporter activity oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor electron transfer activity active monoatomic ion transmembrane transporter activity binding quinone binding ubiquinone binding small molecule binding oxidoreductase activity oxidoreductase activity, acting on NAD(P)H catalytic activity NADH dehydrogenase activity monoatomic cation transmembrane transporter activity proton transmembrane transporter activity primary active transmembrane transporter activity oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor electron transfer activity active monoatomic ion transmembrane transporter activity NADH dehydrogenase (ubiquinone) activity oxidoreduction-driven active transmembrane transporter activity active transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity	aerobic respiration cellular respiration oxidative phosphorylation energy derivation by oxidation of organic compounds respiratory electron transport chain ATP synthesis coupled electron transport electron transport chain metabolic process cellular process generation of precursor metabolites and energy electron transport coupled proton transport transport proton transmembrane transport monoatomic ion transmembrane transport aerobic respiration cellular respiration oxidative phosphorylation energy derivation by oxidation of organic compounds respiratory electron transport chain ATP synthesis coupled electron transport electron transport chain metabolic process cellular process generation of precursor metabolites and energy electron transport coupled proton transport transport proton transmembrane transport monoatomic ion transmembrane transport establishment of localization monoatomic cation transmembrane transport transmembrane transport localization energy coupled proton transmembrane transport, against electrochemical gradient monoatomic ion transport monoatomic cation transport	membrane-bounded organelle mitochondrial membrane intracellular anatomical structure mitochondrion membrane intracellular membrane-bounded organelle intracellular organelle organelle envelope cellular anatomical structure organelle mitochondrial envelope cytoplasm organelle membrane
TA [auth N3], WA [auth N6]	ND3	-	-	-
SA [auth N2]	ND2A	-	-	-
RA [auth N1]	ND1	-	-	-
QA [auth G3]	NDUCA3	-	-	-
PA [auth G2]	NDUCA2	-	-	-
OA [auth G1]	NDUCA1	-	-	-
NA [auth FX]	NDUFX	-	-	-
D [auth 4L]	ND4L	-	-	-
MA [auth ED]	NDUEG13	-	-	-
LA [auth EC]	NDUEG12	-	-	-
KA [auth EB]	NDUEG11	-	-	-
JA [auth EA]	NDUEG10	-	-	-
IA [auth E8]	NDUEG8	-	-	-
HA [auth E6]	NDUEG6	-	-	-
GA [auth E5]	NDUEG5	-	-	-
FA [auth E4]	NDUEG4	-	-	-
EA [auth E3]	NDUEG3	-	-	-
DA [auth E2]	NDUEG2	-	-	-
C [auth 2B]	ND2B	-	-	-
CA [auth E1]	NDUEG1	-	-	-
BA [auth C4]	NDUFC2	-	-	-
AA [auth BM]	NDUFB11	-	-	-
Z [auth BL]	NDUFB10	-	-	-
Y [auth B9]	NDUFB9	-	-	-
X [auth B8]	NDUFB8	-	-	-
W [auth B7]	NDUFB7	-	-	-
V [auth B6]	NDUFB6	-	-	-
U [auth B5]	NDUFB5	-	-	-
T [auth B4]	NDUFB4	-	-	-
B [auth 1B]	NDUFS1B	-	-	-
S [auth B3]	NDUFB3	-	-	-
R [auth B2]	NDUFB2	-	-	-
Q [auth AN]	NDUFA11	-	-	-
P [auth AM]	NDUFA13	-	-	-
O [auth AL]	NDUFA12	-	-	-
N [auth AC]	NDUFAB1-beta	-	-	-
M [auth AB]	NDUFAB1-alpha	-	-	-
L [auth A9]	NDUFA9	-	-	-
K [auth A8]	NDUFA8	-	-	-
J [auth A7]	NDUFA7	-	-	-
A [auth 1A]	NDUFS1A	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
UA [auth N4]	IPR003918	NADH:ubiquinone oxidoreductase	Family
UA [auth N4]	IPR001750	NADH:quinone oxidoreductase/Mrp antiporter, transmembrane domain	Domain

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
HB [auth V2]	UNK
EB [auth U1], FB [auth U2]	UNK
CB [auth S7]	UNK
AB [auth S5]	UNK
XA [auth S2]	2MR	Parent Component: ARG : AA0067 : symmetric dimethyl-L-arginine MOD:00076
QA [auth G3]	UNK	: AA0067
KA [auth EB]	UNK	: AA0067
JA [auth EA]	UNK	: AA0067
C [auth 2B]	UNK	: AA0067
AA [auth BM]	UNK	: AA0067
U [auth B5]	UNK	: AA0067
S [auth B3]	UNK	: AA0067

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.