Annotations: 8JC8

Cryo-EM structure of the LH1 complex from thermochromatium tepidum

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
Y [auth V]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
W [auth T]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
U [auth R]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
S [auth P]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
Q [auth N]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
O [auth J]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
M [auth G]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
K [auth E]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
I [auth B]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
G [auth 8]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
E [auth 6]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
DA [auth X]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
C [auth 4]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
AA [auth Z]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
A [auth 2]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth W]	DNA_topoisoIV	e8jc8W1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
X [auth U]	DNA_topoisoIV	e8jc8U1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
V [auth S]	DNA_topoisoIV	e8jc8S1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
T [auth Q]	DNA_topoisoIV	e8jc8Q1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
R [auth O]	DNA_topoisoIV	e8jc8O1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
P [auth K]	DNA_topoisoIV	e8jc8K1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
N [auth I]	DNA_topoisoIV	e8jc8I1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
L [auth F]	DNA_topoisoIV	e8jc8F1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
J [auth D]	DNA_topoisoIV	e8jc8D1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
H [auth A]	DNA_topoisoIV	e8jc8A1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
F [auth 7]	DNA_topoisoIV	e8jc871	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
D [auth 5]	DNA_topoisoIV	e8jc851	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
CA [auth Y]	DNA_topoisoIV	e8jc8Y1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
BA [auth 1]	DNA_topoisoIV	e8jc811	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
B [auth 3]	TcdA_TcdB_pore	e8jc8301	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: TcdA_TcdB_pore	ECOD (v294.2)
Y [auth V]	DNA_topoisoIV	e8jc8V1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
W [auth T]	DNA_topoisoIV	e8jc8T1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
U [auth R]	DNA_topoisoIV	e8jc8R1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
S [auth P]	DNA_topoisoIV	e8jc8P1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
Q [auth N]	DNA_topoisoIV	e8jc8N1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
O [auth J]	DNA_topoisoIV	e8jc8J1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
M [auth G]	DNA_topoisoIV	e8jc8G1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
K [auth E]	DNA_topoisoIV	e8jc8E1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
I [auth B]	DNA_topoisoIV	e8jc8B1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
G [auth 8]	DNA_topoisoIV	e8jc881	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
E [auth 6]	DNA_topoisoIV	e8jc861	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
DA [auth X]	DNA_topoisoIV	e8jc8X1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
C [auth 4]	DNA_topoisoIV	e8jc841	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
AA [auth Z]	DNA_topoisoIV	e8jc8Z1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
A [auth 2]	DNA_topoisoIV	e8jc821	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth 3], BA [auth 1], CA [auth Y], D [auth 5], F [auth 7], B [auth 3], BA [auth 1], CA [auth Y], D [auth 5], F [auth 7], H [auth A], J [auth D], L [auth F], N [auth I], P [auth K], R [auth O], T [auth Q], V [auth S], X [auth U], Z [auth W]	LH1 alpha polypeptide	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle cytoplasmic vesicle cytoplasm vesicle
A [auth 2], AA [auth Z], C [auth 4], DA [auth X], E [auth 6], A [auth 2], AA [auth Z], C [auth 4], DA [auth X], E [auth 6], G [auth 8], I [auth B], K [auth E], M [auth G], O [auth J], Q [auth N], S [auth P], U [auth R], W [auth T], Y [auth V]	LH1 beta polypeptide	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth 3], BA [auth 1], CA [auth Y], D [auth 5], F [auth 7], B [auth 3], BA [auth 1], CA [auth Y], D [auth 5], F [auth 7], H [auth A], J [auth D], L [auth F], N [auth I], P [auth K], R [auth O], T [auth Q], V [auth S], X [auth U], Z [auth W]	IPR000066	Antenna complex, alpha/beta subunit	Domain
B [auth 3], BA [auth 1], CA [auth Y], D [auth 5], F [auth 7], B [auth 3], BA [auth 1], CA [auth Y], D [auth 5], F [auth 7], H [auth A], J [auth D], L [auth F], N [auth I], P [auth K], R [auth O], T [auth Q], V [auth S], X [auth U], Z [auth W]	IPR018332	Antenna complex, alpha subunit	Family
B [auth 3], BA [auth 1], CA [auth Y], D [auth 5], F [auth 7], B [auth 3], BA [auth 1], CA [auth Y], D [auth 5], F [auth 7], H [auth A], J [auth D], L [auth F], N [auth I], P [auth K], R [auth O], T [auth Q], V [auth S], X [auth U], Z [auth W]	IPR002361	Antenna complex, alpha subunit conserved site	Conserved Site
B [auth 3], BA [auth 1], CA [auth Y], D [auth 5], F [auth 7], B [auth 3], BA [auth 1], CA [auth Y], D [auth 5], F [auth 7], H [auth A], J [auth D], L [auth F], N [auth I], P [auth K], R [auth O], T [auth Q], V [auth S], X [auth U], Z [auth W]	IPR035889	Light-harvesting complex	Homologous Superfamily
A [auth 2], AA [auth Z], C [auth 4], DA [auth X], E [auth 6], A [auth 2], AA [auth Z], C [auth 4], DA [auth X], E [auth 6], G [auth 8], I [auth B], K [auth E], M [auth G], O [auth J], Q [auth N], S [auth P], U [auth R], W [auth T], Y [auth V]	IPR000066	Antenna complex, alpha/beta subunit	Domain
A [auth 2], AA [auth Z], C [auth 4], DA [auth X], E [auth 6], A [auth 2], AA [auth Z], C [auth 4], DA [auth X], E [auth 6], G [auth 8], I [auth B], K [auth E], M [auth G], O [auth J], Q [auth N], S [auth P], U [auth R], W [auth T], Y [auth V]	IPR023624	Antenna complex, beta domain superfamily	Homologous Superfamily
A [auth 2], AA [auth Z], C [auth 4], DA [auth X], E [auth 6], A [auth 2], AA [auth Z], C [auth 4], DA [auth X], E [auth 6], G [auth 8], I [auth B], K [auth E], M [auth G], O [auth J], Q [auth N], S [auth P], U [auth R], W [auth T], Y [auth V]	IPR035889	Light-harvesting complex	Homologous Superfamily
A [auth 2], AA [auth Z], C [auth 4], DA [auth X], E [auth 6], A [auth 2], AA [auth Z], C [auth 4], DA [auth X], E [auth 6], G [auth 8], I [auth B], K [auth E], M [auth G], O [auth J], Q [auth N], S [auth P], U [auth R], W [auth T], Y [auth V]	IPR002362	Light-harvesting protein B beta chain	Family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A [auth 2], AA [auth Z], B [auth 3], BA [auth 1], C [auth 4] A [auth 2], AA [auth Z], B [auth 3], BA [auth 1], C [auth 4], CA [auth Y], D [auth 5], DA [auth X], E [auth 6], F [auth 7], G [auth 8], H [auth A], I [auth B], J [auth D], K [auth E], L [auth F], M [auth G], N [auth I], O [auth J], P [auth K], Q [auth N], R [auth O], S [auth P], T [auth Q], U [auth R], V [auth S], W [auth T], X [auth U], Y [auth V], Z [auth W]	PDBTM	Annotated as membrane protein by PDBTM