Annotations: 8JC9

Cryo-EM structure of the LH1 complex from thermochromatium tepidum

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth 4]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
F [auth 6]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
H [auth 8]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
P [auth J]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
R [auth N]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
T [auth P]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
V [auth R]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
X [auth T]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
Z [auth V]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
N [auth G]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
L [auth E]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
J [auth B]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
BA [auth Z]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
B [auth 2]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth 4]	DNA_topoisoIV	e8jc941	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
F [auth 6]	DNA_topoisoIV	e8jc961	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
H [auth 8]	DNA_topoisoIV	e8jc981	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
P [auth J]	DNA_topoisoIV	e8jc9J1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
R [auth N]	DNA_topoisoIV	e8jc9N1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
T [auth P]	DNA_topoisoIV	e8jc9P1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
V [auth R]	DNA_topoisoIV	e8jc9R1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
X [auth T]	DNA_topoisoIV	e8jc9T1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
Z [auth V]	DNA_topoisoIV	e8jc9V1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
N [auth G]	DNA_topoisoIV	e8jc9G1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
L [auth E]	DNA_topoisoIV	e8jc9E1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
J [auth B]	DNA_topoisoIV	e8jc9B1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
BA [auth Z]	DNA_topoisoIV	e8jc9Z1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
B [auth 2]	DNA_topoisoIV	e8jc921	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
K [auth D]	DNA_topoisoIV	e8jc9D1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
Q [auth K]	DNA_topoisoIV	e8jc9K1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
S [auth O]	DNA_topoisoIV	e8jc9O1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
W [auth S]	DNA_topoisoIV	e8jc9S1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
Y [auth U]	DNA_topoisoIV	e8jc9U1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
U [auth Q]	DNA_topoisoIV	e8jc9Q1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
O [auth I]	DNA_topoisoIV	e8jc9I1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
M [auth F]	DNA_topoisoIV	e8jc9F1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
I [auth A]	DNA_topoisoIV	e8jc9A1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
G [auth 7]	DNA_topoisoIV	e8jc971	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
E [auth 5]	DNA_topoisoIV	e8jc951	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
C [auth 3]	DNA_topoisoIV	e8jc931	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
AA [auth Y]	DNA_topoisoIV	e8jc9Y1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
A [auth 1]	DNA_topoisoIV	e8jc911	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth 2], BA [auth Z], D [auth 4], F [auth 6], H [auth 8], B [auth 2], BA [auth Z], D [auth 4], F [auth 6], H [auth 8], J [auth B], L [auth E], N [auth G], P [auth J], R [auth N], T [auth P], V [auth R], X [auth T], Z [auth V]	LH1 beta polypeptide	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle
A [auth 1], AA [auth Y], C [auth 3], E [auth 5], G [auth 7], A [auth 1], AA [auth Y], C [auth 3], E [auth 5], G [auth 7], I [auth A], K [auth D], M [auth F], O [auth I], Q [auth K], S [auth O], U [auth Q], W [auth S], Y [auth U]	LH1 alpha polypeptide	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle cytoplasmic vesicle cytoplasm vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth 2], BA [auth Z], D [auth 4], F [auth 6], H [auth 8], B [auth 2], BA [auth Z], D [auth 4], F [auth 6], H [auth 8], J [auth B], L [auth E], N [auth G], P [auth J], R [auth N], T [auth P], V [auth R], X [auth T], Z [auth V]	IPR000066	Antenna complex, alpha/beta subunit	Domain
B [auth 2], BA [auth Z], D [auth 4], F [auth 6], H [auth 8], B [auth 2], BA [auth Z], D [auth 4], F [auth 6], H [auth 8], J [auth B], L [auth E], N [auth G], P [auth J], R [auth N], T [auth P], V [auth R], X [auth T], Z [auth V]	IPR023624	Antenna complex, beta domain superfamily	Homologous Superfamily
B [auth 2], BA [auth Z], D [auth 4], F [auth 6], H [auth 8], B [auth 2], BA [auth Z], D [auth 4], F [auth 6], H [auth 8], J [auth B], L [auth E], N [auth G], P [auth J], R [auth N], T [auth P], V [auth R], X [auth T], Z [auth V]	IPR035889	Light-harvesting complex	Homologous Superfamily
B [auth 2], BA [auth Z], D [auth 4], F [auth 6], H [auth 8], B [auth 2], BA [auth Z], D [auth 4], F [auth 6], H [auth 8], J [auth B], L [auth E], N [auth G], P [auth J], R [auth N], T [auth P], V [auth R], X [auth T], Z [auth V]	IPR002362	Light-harvesting protein B beta chain	Family
A [auth 1], AA [auth Y], C [auth 3], E [auth 5], G [auth 7], A [auth 1], AA [auth Y], C [auth 3], E [auth 5], G [auth 7], I [auth A], K [auth D], M [auth F], O [auth I], Q [auth K], S [auth O], U [auth Q], W [auth S], Y [auth U]	IPR000066	Antenna complex, alpha/beta subunit	Domain
A [auth 1], AA [auth Y], C [auth 3], E [auth 5], G [auth 7], A [auth 1], AA [auth Y], C [auth 3], E [auth 5], G [auth 7], I [auth A], K [auth D], M [auth F], O [auth I], Q [auth K], S [auth O], U [auth Q], W [auth S], Y [auth U]	IPR018332	Antenna complex, alpha subunit	Family
A [auth 1], AA [auth Y], C [auth 3], E [auth 5], G [auth 7], A [auth 1], AA [auth Y], C [auth 3], E [auth 5], G [auth 7], I [auth A], K [auth D], M [auth F], O [auth I], Q [auth K], S [auth O], U [auth Q], W [auth S], Y [auth U]	IPR002361	Antenna complex, alpha subunit conserved site	Conserved Site
A [auth 1], AA [auth Y], C [auth 3], E [auth 5], G [auth 7], A [auth 1], AA [auth Y], C [auth 3], E [auth 5], G [auth 7], I [auth A], K [auth D], M [auth F], O [auth I], Q [auth K], S [auth O], U [auth Q], W [auth S], Y [auth U]	IPR035889	Light-harvesting complex	Homologous Superfamily

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A [auth 1], AA [auth Y], B [auth 2], BA [auth Z], C [auth 3] A [auth 1], AA [auth Y], B [auth 2], BA [auth Z], C [auth 3], D [auth 4], E [auth 5], F [auth 6], G [auth 7], H [auth 8], I [auth A], J [auth B], K [auth D], L [auth E], M [auth F], N [auth G], O [auth I], P [auth J], Q [auth K], R [auth N], S [auth O], T [auth P], U [auth Q], V [auth R], W [auth S], X [auth T], Y [auth U], Z [auth V]	PDBTM	Annotated as membrane protein by PDBTM