8JLE | pdb_00008jle

Cryo-EM structure of SV2A LD4 in complex with BoNT/A2 Hc in the SV2A-levetiracetam-BoNT/A2 Hc complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	GMC_oxred_C	e8jleA01	A: alpha bundles	X: Helical bundle insertion in helicase domains	H: Helical bundle in Hef helicase	T: Helical bundle in Hef helicase	F: GMC_oxred_C	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF23894	SV2A/B/C luminal domain (LD_SV2)	SV2A/B/C luminal domain	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Botulinum neurotoxin	macromolecule transmembrane transporter activity protein transporter activity protein transmembrane transporter activity transporter activity transmembrane transporter activity peptidase activity catalytic activity, acting on a protein metalloendopeptidase activity hydrolase activity metallopeptidase activity catalytic activity endopeptidase activity toxin activity cation binding macromolecule transmembrane transporter activity protein transporter activity protein transmembrane transporter activity transporter activity transmembrane transporter activity peptidase activity catalytic activity, acting on a protein metalloendopeptidase activity hydrolase activity metallopeptidase activity catalytic activity endopeptidase activity toxin activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	cellular anatomical structure extracellular region host cellular component host cell part host cell synapse host cell membrane host cell presynaptic membrane other organism part host intracellular part host cell cytoplasm host intracellular region host cell cytosol host cell cytoplasm part host intracellular membrane-bounded organelle cellular anatomical structure extracellular region host cellular component host cell part host cell synapse host cell membrane host cell presynaptic membrane other organism part host intracellular part host cell cytoplasm host intracellular region host cell cytosol host cell cytoplasm part host intracellular membrane-bounded organelle host intracellular organelle host cell cytoplasmic vesicle
A	Synaptic vesicle glycoprotein 2A	protein binding binding kinase binding enzyme binding protein kinase binding transporter activity transmembrane transporter activity	cellular localization regulated exocytosis synaptic vesicle priming transport signaling synaptic vesicle cycle synaptic vesicle exocytosis vesicle-mediated transport cell communication vesicle-mediated transport in synapse cellular component organization cellular component biogenesis localization synaptic signaling cellular component assembly cellular localization regulated exocytosis synaptic vesicle priming transport signaling synaptic vesicle cycle synaptic vesicle exocytosis vesicle-mediated transport cell communication vesicle-mediated transport in synapse cellular component organization cellular component biogenesis localization synaptic signaling cellular component assembly secretion by cell signal release establishment of localization in cell protein-containing complex assembly cellular component organization or biogenesis trans-synaptic signaling regulation of biological process neurotransmitter secretion protein-containing complex organization secretion biological regulation export from cell cell-cell signaling neurotransmitter transport establishment of localization chemical synaptic transmission signal release from synapse exocytosis anterograde trans-synaptic signaling exocytic process cellular process inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis	cellular anatomical structure neuromuscular junction synapse cell junction presynapse presynaptic active zone cell-cell junction anchoring junction cell periphery plasma membrane membrane membrane-bounded organelle intracellular anatomical structure intracellular vesicle cellular anatomical structure neuromuscular junction synapse cell junction presynapse presynaptic active zone cell-cell junction anchoring junction cell periphery plasma membrane membrane membrane-bounded organelle intracellular anatomical structure intracellular vesicle transport vesicle membrane endomembrane system intracellular organelle bounding membrane of organelle cytoplasmic vesicle vesicle membrane synaptic vesicle synaptic vesicle membrane vesicle transport vesicle exocytic vesicle membrane intracellular membrane-bounded organelle cytoplasmic vesicle membrane organelle secretory vesicle cytoplasm organelle membrane exocytic vesicle GABA-ergic synapse glutamatergic synapse endoplasmic reticulum cell projection neuron projection plasma membrane bounded cell projection

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR000395	Botulinum/Tetanus toxin, catalytic chain	Domain
B	IPR012928	Clostridium neurotoxin, receptor binding N-terminal	Domain
B	IPR012500	Clostridium neurotoxin, translocation	Domain
B	IPR011065	Kunitz inhibitor STI-like superfamily	Homologous Superfamily
B	IPR013104	Clostridium neurotoxin, receptor-binding C-terminal	Domain
B	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
B	IPR036248	Clostridium neurotoxin, translocation domain	Homologous Superfamily
A	IPR022308	Synaptic vesicle protein SV2	Family
A	IPR011701	Major facilitator superfamily	Family
A	IPR005828	Major facilitator, sugar transporter-like	Family
A	IPR005829	Sugar transporter, conserved site	Conserved Site
A	IPR055415	SV2A/B/C, luminal domain	Domain
A	IPR036259	MFS transporter superfamily	Homologous Superfamily
A	IPR020846	Major facilitator superfamily domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q7L0J3	Partial Epilepsy Treatment Adjunct astrocytic tumor breast carcinoma Gaucher disease large cell medulloblastoma malignant ependymoma medulloblastoma ovarian cancer schizophrenia atypical teratoid rhabdoid tumor epilepsy glioblastoma lung cancer malignant glioma partial epilepsy Partial Epilepsy Treatment Adjunct astrocytic tumor breast carcinoma Gaucher disease large cell medulloblastoma malignant ependymoma medulloblastoma ovarian cancer schizophrenia atypical teratoid rhabdoid tumor epilepsy glioblastoma lung cancer malignant glioma partial epilepsy botulism idiopathic scoliosis lung carcinoma malignant mesothelioma non-small cell lung carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.