8JRE | pdb_00008jre

Cryo-EM structure of a designed AAV8-based vector


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ZA [auth r]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
YA [auth q]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
YSCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
XA [auth p]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
WA [auth o]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
VA [auth n]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
UA [auth m]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
U [auth T]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
TA [auth k]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
T [auth S]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
SA [auth l]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
S [auth R]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
RA [auth j]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
R [auth Q]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
QA [auth i]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
Q [auth P]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
PA [auth h]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
P [auth O]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
OA [auth g]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
O [auth N]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
NA [auth f]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
N [auth M]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
MA [auth e]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
M [auth L]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
LA [auth d]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
L [auth K]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
KA [auth c]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
K [auth J]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
JA [auth b]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
J [auth I]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
IA [auth a]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
I [auth H]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
HB [auth z]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
HA [auth 9]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
H [auth G]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
GB [auth y]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
GA [auth 8]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
G [auth F]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
FB [auth x]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
FA [auth 7]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
F [auth E]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
EB [auth w]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
EA [auth 6]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
E [auth D]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
DB [auth v]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
DA [auth 5]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
CB [auth u]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
CA [auth 4]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
C [auth B]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
BB [auth t]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
BA [auth 3]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
B [auth A]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
AB [auth s]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
AA [auth 2]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)
A [auth 1]SCOP2B SuperfamilyssDNA viruses 8071440 3000931 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ZA [auth r]DNA_topoisoIVe8jrer1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
ZDNA_topoisoIVe8jreZ1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
YA [auth q]DNA_topoisoIVe8jreq1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
YDNA_topoisoIVe8jreY1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
XA [auth p]DNA_topoisoIVe8jrep1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
XDNA_topoisoIVe8jreX1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
WA [auth o]DNA_topoisoIVe8jreo1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
WDNA_topoisoIVe8jreW1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
VA [auth n]DNA_topoisoIVe8jren1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
VDNA_topoisoIVe8jreV1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
UA [auth m]DNA_topoisoIVe8jrem1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
U [auth T]DNA_topoisoIVe8jreT1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
TA [auth k]DNA_topoisoIVe8jrek1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
T [auth S]DNA_topoisoIVe8jreS1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
SA [auth l]DNA_topoisoIVe8jrel1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
S [auth R]DNA_topoisoIVe8jreR1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
RA [auth j]DNA_topoisoIVe8jrej1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
R [auth Q]DNA_topoisoIVe8jreQ1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
QA [auth i]DNA_topoisoIVe8jrei1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
Q [auth P]DNA_topoisoIVe8jreP1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
PA [auth h]DNA_topoisoIVe8jreh1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
P [auth O]DNA_topoisoIVe8jreO1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
OA [auth g]DNA_topoisoIVe8jreg1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
O [auth N]DNA_topoisoIVe8jreN1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
NA [auth f]DNA_topoisoIVe8jref1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
N [auth M]DNA_topoisoIVe8jreM1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
MA [auth e]DNA_topoisoIVe8jree1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
M [auth L]DNA_topoisoIVe8jreL1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
LA [auth d]DNA_topoisoIVe8jred1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
L [auth K]DNA_topoisoIVe8jreK1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
KA [auth c]DNA_topoisoIVe8jrec1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
K [auth J]DNA_topoisoIVe8jreJ1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
JA [auth b]DNA_topoisoIVe8jreb1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
J [auth I]DNA_topoisoIVe8jreI1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
IA [auth a]DNA_topoisoIVe8jrea1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
I [auth H]DNA_topoisoIVe8jreH1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
HB [auth z]DNA_topoisoIVe8jrez1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
HA [auth 9]DNA_topoisoIVe8jre91 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
H [auth G]DNA_topoisoIVe8jreG1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
GB [auth y]DNA_topoisoIVe8jrey1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
GA [auth 8]DNA_topoisoIVe8jre81 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
G [auth F]DNA_topoisoIVe8jreF1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
FB [auth x]DNA_topoisoIVe8jrex1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
FA [auth 7]DNA_topoisoIVe8jre71 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
F [auth E]DNA_topoisoIVe8jreE1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
EB [auth w]DNA_topoisoIVe8jrew1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
EA [auth 6]DNA_topoisoIVe8jre61 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
E [auth D]DNA_topoisoIVe8jreD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
DB [auth v]DNA_topoisoIVe8jrev1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
DA [auth 5]DNA_topoisoIVe8jre51 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
D [auth C]DNA_topoisoIVe8jreC1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
CB [auth u]DNA_topoisoIVe8jreu1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
CA [auth 4]DNA_topoisoIVe8jre41 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
C [auth B]DNA_topoisoIVe8jreB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
BB [auth t]DNA_topoisoIVe8jret1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
BA [auth 3]DNA_topoisoIVe8jre31 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
B [auth A]DNA_topoisoIVe8jreA1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
AB [auth s]DNA_topoisoIVe8jres1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
AA [auth 2]DNA_topoisoIVe8jre21 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
A [auth 1]e8jre101 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF:ECOD (v294.2)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR013607Phospholipase A2-like domainDomain
IPR016184Capsid/spike protein, ssDNA virusHomologous Superfamily
IPR001403Coat protein VP1/VP2, ParvovirusDomain
IPR036952Parvovirus coat protein VP1/VP2Homologous Superfamily