8JRE | pdb_00008jre

Cryo-EM structure of a designed AAV8-based vector

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
ZA [auth r]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
Z	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
YA [auth q]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
Y	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
XA [auth p]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
WA [auth o]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
VA [auth n]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
UA [auth m]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
U [auth T]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
TA [auth k]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
T [auth S]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
SA [auth l]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
S [auth R]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
RA [auth j]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
R [auth Q]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
QA [auth i]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
Q [auth P]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
PA [auth h]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
P [auth O]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
OA [auth g]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
O [auth N]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
NA [auth f]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
N [auth M]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
MA [auth e]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
M [auth L]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
LA [auth d]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
L [auth K]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
KA [auth c]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
K [auth J]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
JA [auth b]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
J [auth I]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
IA [auth a]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
I [auth H]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
HB [auth z]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
HA [auth 9]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
H [auth G]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
GB [auth y]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
GA [auth 8]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
G [auth F]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
FB [auth x]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
FA [auth 7]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
F [auth E]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
EB [auth w]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
EA [auth 6]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
E [auth D]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
DB [auth v]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
DA [auth 5]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
CB [auth u]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
CA [auth 4]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
BB [auth t]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
BA [auth 3]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
AB [auth s]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
AA [auth 2]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
A [auth 1]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZA [auth r]	V-set	e8jrer1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
Z	V-set	e8jreZ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
YA [auth q]	V-set	e8jreq1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
Y	V-set	e8jreY1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
XA [auth p]	V-set	e8jrep1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
X	V-set	e8jreX1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
WA [auth o]	V-set	e8jreo1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
W	V-set	e8jreW1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
VA [auth n]	V-set	e8jren1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
V	V-set	e8jreV1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
UA [auth m]	V-set	e8jrem1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
U [auth T]	V-set	e8jreT1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
TA [auth k]	V-set	e8jrek1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
T [auth S]	V-set	e8jreS1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
SA [auth l]	V-set	e8jrel1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
S [auth R]	V-set	e8jreR1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
RA [auth j]	V-set	e8jrej1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
R [auth Q]	V-set	e8jreQ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
QA [auth i]	V-set	e8jrei1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
Q [auth P]	V-set	e8jreP1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
PA [auth h]	V-set	e8jreh1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
P [auth O]	V-set	e8jreO1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
OA [auth g]	V-set	e8jreg1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
O [auth N]	V-set	e8jreN1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
NA [auth f]	V-set	e8jref1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
N [auth M]	V-set	e8jreM1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
MA [auth e]	V-set	e8jree1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
M [auth L]	V-set	e8jreL1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
LA [auth d]	V-set	e8jred1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
L [auth K]	V-set	e8jreK1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
KA [auth c]	V-set	e8jrec1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
K [auth J]	V-set	e8jreJ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
JA [auth b]	V-set	e8jreb1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
J [auth I]	V-set	e8jreI1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
IA [auth a]	V-set	e8jrea1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
I [auth H]	V-set	e8jreH1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
HB [auth z]	V-set	e8jrez1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
HA [auth 9]	V-set	e8jre91	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
H [auth G]	V-set	e8jreG1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
GB [auth y]	V-set	e8jrey1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
GA [auth 8]	V-set	e8jre81	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
G [auth F]	V-set	e8jreF1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
FB [auth x]	V-set	e8jrex1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
FA [auth 7]	V-set	e8jre71	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
F [auth E]	V-set	e8jreE1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
EB [auth w]	V-set	e8jrew1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
EA [auth 6]	V-set	e8jre61	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
E [auth D]	V-set	e8jreD1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
DB [auth v]	V-set	e8jrev1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
DA [auth 5]	V-set	e8jre51	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
D [auth C]	V-set	e8jreC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
CB [auth u]	V-set	e8jreu1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
CA [auth 4]	V-set	e8jre41	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
C [auth B]	V-set	e8jreB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
BB [auth t]	V-set	e8jret1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
BA [auth 3]	V-set	e8jre31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
B [auth A]	V-set	e8jreA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
AB [auth s]	V-set	e8jres1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
AA [auth 2]	V-set	e8jre21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
A [auth 1]		e8jre101	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 1], AA [auth 2], AB [auth s], B [auth A], BA [auth 3], A [auth 1], AA [auth 2], AB [auth s], B [auth A], BA [auth 3], BB [auth t], C [auth B], CA [auth 4], CB [auth u], D [auth C], DA [auth 5], DB [auth v], E [auth D], EA [auth 6], EB [auth w], F [auth E], FA [auth 7], FB [auth x], G [auth F], GA [auth 8], GB [auth y], H [auth G], HA [auth 9], HB [auth z], I [auth H], IA [auth a], J [auth I], JA [auth b], K [auth J], KA [auth c], L [auth K], LA [auth d], M [auth L], MA [auth e], N [auth M], NA [auth f], O [auth N], OA [auth g], P [auth O], PA [auth h], Q [auth P], QA [auth i], R [auth Q], RA [auth j], S [auth R], SA [auth l], T [auth S], TA [auth k], U [auth T], UA [auth m], V, VA [auth n], W, WA [auth o], X, XA [auth p], Y, YA [auth q], Z, ZA [auth r]	Capsid protein	structural molecule activity binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	-	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth 1], AA [auth 2], AB [auth s], B [auth A], BA [auth 3], A [auth 1], AA [auth 2], AB [auth s], B [auth A], BA [auth 3], BB [auth t], C [auth B], CA [auth 4], CB [auth u], D [auth C], DA [auth 5], DB [auth v], E [auth D], EA [auth 6], EB [auth w], F [auth E], FA [auth 7], FB [auth x], G [auth F], GA [auth 8], GB [auth y], H [auth G], HA [auth 9], HB [auth z], I [auth H], IA [auth a], J [auth I], JA [auth b], K [auth J], KA [auth c], L [auth K], LA [auth d], M [auth L], MA [auth e], N [auth M], NA [auth f], O [auth N], OA [auth g], P [auth O], PA [auth h], Q [auth P], QA [auth i], R [auth Q], RA [auth j], S [auth R], SA [auth l], T [auth S], TA [auth k], U [auth T], UA [auth m], V, VA [auth n], W, WA [auth o], X, XA [auth p], Y, YA [auth q], Z, ZA [auth r]	IPR013607	Phospholipase A2-like domain	Domain
A [auth 1], AA [auth 2], AB [auth s], B [auth A], BA [auth 3], A [auth 1], AA [auth 2], AB [auth s], B [auth A], BA [auth 3], BB [auth t], C [auth B], CA [auth 4], CB [auth u], D [auth C], DA [auth 5], DB [auth v], E [auth D], EA [auth 6], EB [auth w], F [auth E], FA [auth 7], FB [auth x], G [auth F], GA [auth 8], GB [auth y], H [auth G], HA [auth 9], HB [auth z], I [auth H], IA [auth a], J [auth I], JA [auth b], K [auth J], KA [auth c], L [auth K], LA [auth d], M [auth L], MA [auth e], N [auth M], NA [auth f], O [auth N], OA [auth g], P [auth O], PA [auth h], Q [auth P], QA [auth i], R [auth Q], RA [auth j], S [auth R], SA [auth l], T [auth S], TA [auth k], U [auth T], UA [auth m], V, VA [auth n], W, WA [auth o], X, XA [auth p], Y, YA [auth q], Z, ZA [auth r]	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
A [auth 1], AA [auth 2], AB [auth s], B [auth A], BA [auth 3], A [auth 1], AA [auth 2], AB [auth s], B [auth A], BA [auth 3], BB [auth t], C [auth B], CA [auth 4], CB [auth u], D [auth C], DA [auth 5], DB [auth v], E [auth D], EA [auth 6], EB [auth w], F [auth E], FA [auth 7], FB [auth x], G [auth F], GA [auth 8], GB [auth y], H [auth G], HA [auth 9], HB [auth z], I [auth H], IA [auth a], J [auth I], JA [auth b], K [auth J], KA [auth c], L [auth K], LA [auth d], M [auth L], MA [auth e], N [auth M], NA [auth f], O [auth N], OA [auth g], P [auth O], PA [auth h], Q [auth P], QA [auth i], R [auth Q], RA [auth j], S [auth R], SA [auth l], T [auth S], TA [auth k], U [auth T], UA [auth m], V, VA [auth n], W, WA [auth o], X, XA [auth p], Y, YA [auth q], Z, ZA [auth r]	IPR001403	Coat protein VP1/VP2, Parvovirus	Domain
A [auth 1], AA [auth 2], AB [auth s], B [auth A], BA [auth 3], A [auth 1], AA [auth 2], AB [auth s], B [auth A], BA [auth 3], BB [auth t], C [auth B], CA [auth 4], CB [auth u], D [auth C], DA [auth 5], DB [auth v], E [auth D], EA [auth 6], EB [auth w], F [auth E], FA [auth 7], FB [auth x], G [auth F], GA [auth 8], GB [auth y], H [auth G], HA [auth 9], HB [auth z], I [auth H], IA [auth a], J [auth I], JA [auth b], K [auth J], KA [auth c], L [auth K], LA [auth d], M [auth L], MA [auth e], N [auth M], NA [auth f], O [auth N], OA [auth g], P [auth O], PA [auth h], Q [auth P], QA [auth i], R [auth Q], RA [auth j], S [auth R], SA [auth l], T [auth S], TA [auth k], U [auth T], UA [auth m], V, VA [auth n], W, WA [auth o], X, XA [auth p], Y, YA [auth q], Z, ZA [auth r]	IPR036952	Parvovirus coat protein VP1/VP2	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.