Annotations: 8JXI

rat megalin RAP complex wingB

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth C]	V-set	e8jxiC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth A], C [auth B]	PF00057	Low-density lipoprotein receptor domain class A (Ldl_recept_a)	Low-density lipoprotein receptor domain class A	-	Repeat
B [auth A], C [auth B]	PF00058	Low-density lipoprotein receptor repeat class B (Ldl_recept_b)	Low-density lipoprotein receptor repeat class B	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth H]	unclear peptide	-	-	-
D [auth G]	unclear peptide	-	-	-
B [auth A], C [auth B]	LDL receptor related protein 2	protein binding binding protein-folding chaperone binding SH3 domain binding protein domain specific binding protein-containing complex binding hormone binding cation binding ion binding calcium ion binding metal ion binding small molecule binding hemoglobin binding PDZ domain binding protein binding binding protein-folding chaperone binding SH3 domain binding protein domain specific binding protein-containing complex binding hormone binding cation binding ion binding calcium ion binding metal ion binding small molecule binding hemoglobin binding PDZ domain binding cargo receptor activity insulin-like growth factor binding insulin-like growth factor I binding growth factor binding protein transporter activity transporter activity low-density lipoprotein particle receptor binding signaling receptor binding lipoprotein particle receptor binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding nuclear receptor binding DNA-binding transcription factor binding	developmental process multicellular organismal process gonad development reproductive system development reproductive process sex differentiation animal organ development developmental process involved in reproduction male gonad development male sex differentiation multicellular organism development development of primary male sexual characteristics development of primary sexual characteristics anatomical structure development reproductive structure development developmental process multicellular organismal process gonad development reproductive system development reproductive process sex differentiation animal organ development developmental process involved in reproduction male gonad development male sex differentiation multicellular organism development development of primary male sexual characteristics development of primary sexual characteristics anatomical structure development reproductive structure development animal gross anatomical part developmental process system development response to stimulus response to chemical response to xenobiotic stimulus heart development circulatory system development import into cell nitrogen compound transport carboxylic acid transport carboxylic acid transmembrane transport transport import across plasma membrane vitamin transport folate transmembrane transport establishment of localization transmembrane transport organic acid transport localization folate import across plasma membrane folic acid transport dicarboxylic acid transport cellular process modified amino acid transport vitamin transmembrane transport heart formation heart morphogenesis specification of animal organ identity pattern specification process regionalization anatomical structure morphogenesis anatomical structure formation involved in morphogenesis secondary heart field specification animal organ morphogenesis animal organ formation heart field specification positive regulation of nervous system development oligodendrocyte progenitor proliferation regulation of cellular process cellular developmental process regulation of developmental process positive regulation of cell population proliferation positive regulation of biological process cell development regulation of neurogenesis regulation of cell differentiation positive regulation of oligodendrocyte progenitor proliferation regulation of gliogenesis positive regulation of gliogenesis regulation of cell development regulation of nervous system development positive regulation of developmental process neurogenesis gliogenesis positive regulation of cell differentiation cell differentiation regulation of multicellular organismal process positive regulation of neurogenesis positive regulation of cellular process regulation of neural precursor cell proliferation regulation of multicellular organismal development regulation of biological process cell population proliferation biological regulation positive regulation of cell development nervous system development positive regulation of neural precursor cell proliferation regulation of cell population proliferation positive regulation of multicellular organismal process neural precursor cell proliferation regulation of oligodendrocyte progenitor proliferation response to X-ray response to ionizing radiation response to radiation response to abiotic stimulus cellular response to stimulus negative regulation of thrombin-activated receptor signaling pathway signaling negative regulation of signaling negative regulation of biological process regulation of signal transduction negative regulation of G protein-coupled receptor signaling pathway negative regulation of cell communication cell communication thrombin-activated receptor signaling pathway negative regulation of cellular process signal transduction regulation of G protein-coupled receptor signaling pathway regulation of signaling negative regulation of response to stimulus regulation of thrombin-activated receptor signaling pathway negative regulation of signal transduction regulation of response to stimulus regulation of cell communication G protein-coupled receptor signaling pathway artery development aorta development vasculature development blood vessel development cell surface receptor protein serine/threonine kinase signaling pathway cellular response to growth factor stimulus regulation of transmembrane receptor protein serine/threonine kinase signaling pathway negative regulation of cellular response to growth factor stimulus negative regulation of BMP signaling pathway cellular response to endogenous stimulus BMP signaling pathway enzyme-linked receptor protein signaling pathway cellular response to BMP stimulus cell surface receptor signaling pathway regulation of BMP signaling pathway response to endogenous stimulus regulation of cellular response to growth factor stimulus response to BMP transforming growth factor beta receptor superfamily signaling pathway response to growth factor negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway cardiac chamber morphogenesis cardiac septum development cardiac septum morphogenesis cardiac chamber development outflow tract septum morphogenesis outflow tract morphogenesis establishment of protein localization vesicle-mediated transport establishment of protein localization to organelle protein transport macromolecule localization protein localization to organelle intracellular protein localization receptor-mediated endocytosis endocytosis endocytic hemoglobin import into cell embryonic epithelial tube formation chordate embryonic development tube formation embryo development epithelial tube formation tube morphogenesis primary neural tube formation embryo development ending in birth or egg hatching epithelial tube morphogenesis morphogenesis of embryonic epithelium epithelium development neural tube development tube development embryonic morphogenesis morphogenesis of an epithelium tissue development tissue morphogenesis neural tube closure neural tube formation tube closure cellular localization establishment of localization in cell intracellular transport endosomal transport system process sensory perception nervous system process sensory perception of sound sensory perception of mechanical stimulus blood vessel morphogenesis pulmonary artery morphogenesis artery morphogenesis response to hormone response to leptin kidney development renal system development positive chemotaxis axonogenesis cell projection organization plasma membrane bounded cell projection morphogenesis neuron projection development cell morphogenesis cellular component organization cell projection morphogenesis neuron differentiation taxis neuron projection morphogenesis cellular component organization or biogenesis locomotion chemoattraction of axon chemotaxis plasma membrane bounded cell projection organization axon guidance response to external stimulus axon development cell morphogenesis involved in neuron differentiation generation of neurons cellular response to chemical stimulus neuron projection guidance neuron development ventricular septum development cardiac ventricle development genitalia development female genitalia development female sex differentiation vagina development intracellular signal transduction intracellular signaling cassette phosphatidylinositol 3-kinase/protein kinase B signal transduction cranial skeletal system development negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death negative regulation of apoptotic process apoptotic process programmed cell death amyloid-beta clearance kidney epithelium development metanephric proximal tubule development nephron tubule development metanephric epithelium development metanephros development renal tubule development nephron development metanephric nephron epithelium development nephron epithelium development proximal tubule development metanephric nephron tubule development metanephric tubule development response to retinoic acid response to lipid response to oxygen-containing compound regulation of localization regulation of protein localization positive regulation of establishment of protein localization positive regulation of protein transport regulation of lipoprotein transport regulation of transport positive regulation of lipoprotein transport regulation of establishment of protein localization regulation of protein transport lipoprotein transport positive regulation of transport positive regulation of protein localization lipoprotein localization coronary vasculature development coronary artery morphogenesis coronary vasculature morphogenesis protein import head development forebrain development brain development central nervous system development small molecule metabolic process metabolic process vitamin metabolic process biosynthetic process macromolecule metabolic process gene expression macromolecule biosynthetic process transcytosis response to nutrient levels response to vitamin D response to nutrient response to vitamin monoatomic ion transport monoatomic cation transport metal ion transport regulation of protein catabolic process in the vacuole catabolic process positive regulation of protein metabolic process lysosomal protein catabolic process macromolecule catabolic process regulation of primary metabolic process positive regulation of metabolic process positive regulation of macromolecule metabolic process positive regulation of lysosomal protein catabolic process protein metabolic process regulation of protein metabolic process protein catabolic process in the vacuole primary metabolic process regulation of macromolecule metabolic process protein catabolic process regulation of catabolic process positive regulation of protein catabolic process positive regulation of catabolic process regulation of lysosomal protein catabolic process positive regulation of protein catabolic process in the vacuole regulation of metabolic process regulation of protein catabolic process animal organ regeneration regeneration neuron projection arborization ventricular cardiac muscle tissue morphogenesis striated muscle tissue development muscle structure development ventricular cardiac muscle tissue development muscle tissue development muscle organ development cardiac muscle tissue development muscle tissue morphogenesis ventricular compact myocardium morphogenesis cardiac ventricle morphogenesis cardiac muscle tissue morphogenesis muscle organ morphogenesis positive regulation of cellular component organization regulation of cellular component organization regulation of vesicle-mediated transport positive regulation of endocytosis regulation of endocytosis	cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane clathrin-coated pit endomembrane system apical part of cell cluster of actin-based cell projections brush border somatodendritic compartment cell projection cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane clathrin-coated pit endomembrane system apical part of cell cluster of actin-based cell projections brush border somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle endocytic vesicle protein-containing complex signaling receptor complex Golgi apparatus axon growth cone distal axon axonal growth cone site of polarized growth plasma membrane region apical plasma membrane endosome brush border membrane cell projection membrane membrane-enclosed lumen intracellular organelle lumen organelle lumen endosome lumen endoplasmic reticulum
A [auth C]	Alpha-2-macroglobulin receptor-associated protein	molecular function activator activity molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity molecular function inhibitor activity signaling receptor inhibitor activity receptor antagonist activity protein binding binding enzyme binding lipase binding low-density lipoprotein particle receptor binding signaling receptor binding molecular function activator activity molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity molecular function inhibitor activity signaling receptor inhibitor activity receptor antagonist activity protein binding binding enzyme binding lipase binding low-density lipoprotein particle receptor binding signaling receptor binding lipoprotein particle receptor binding very-low-density lipoprotein particle receptor binding heparin binding glycosaminoglycan binding carbohydrate derivative binding sulfur compound binding	regulation of localization import into cell regulation of cellular process regulation of cellular component organization receptor internalization transport negative regulation of biological process negative regulation of transport negative regulation of endocytosis regulation of receptor internalization vesicle-mediated transport cellular component organization localization negative regulation of cellular process regulation of localization import into cell regulation of cellular process regulation of cellular component organization receptor internalization transport negative regulation of biological process negative regulation of transport negative regulation of endocytosis regulation of receptor internalization vesicle-mediated transport cellular component organization localization negative regulation of cellular process cellular component organization or biogenesis regulation of endocytosis regulation of biological process negative regulation of cellular component organization regulation of transport negative regulation of receptor-mediated endocytosis regulation of receptor-mediated endocytosis biological regulation regulation of vesicle-mediated transport establishment of localization cellular process endocytosis receptor-mediated endocytosis negative regulation of receptor internalization cellular response to stimulus response to stimulus signaling signal transduction cell communication multicellular organismal process very-low-density lipoprotein particle clearance regulation of plasma lipoprotein particle levels plasma lipoprotein particle clearance negative regulation of very-low-density lipoprotein particle clearance negative regulation of lipoprotein particle clearance regulation of lipoprotein particle clearance regulation of multicellular organismal process regulation of very-low-density lipoprotein particle clearance negative regulation of multicellular organismal process amyloid-beta clearance amyloid-beta clearance by transcytosis transcytosis negative regulation of amyloid-beta clearance regulation of amyloid-beta clearance	cellular anatomical structure endomembrane system membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus cis-Golgi network organelle intracellular membrane-bounded organelle cytoplasm vesicle cell surface cell periphery plasma membrane cellular anatomical structure endomembrane system membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus cis-Golgi network organelle intracellular membrane-bounded organelle cytoplasm vesicle cell surface cell periphery plasma membrane membrane membrane-enclosed lumen intracellular organelle lumen endoplasmic reticulum lumen rough endoplasmic reticulum rough endoplasmic reticulum lumen organelle lumen endoplasmic reticulum Golgi lumen endosome intracellular vesicle cytoplasmic vesicle endoplasmic reticulum-Golgi intermediate compartment endosome lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth A], C [auth B]	IPR018097	EGF-like calcium-binding, conserved site	Conserved Site
B [auth A], C [auth B]	IPR026823	Complement Clr-like EGF domain	Domain
B [auth A], C [auth B]	IPR036055	LDL receptor-like superfamily	Homologous Superfamily
B [auth A], C [auth B]	IPR000033	LDLR class B repeat	Repeat
B [auth A], C [auth B]	IPR001881	EGF-like calcium-binding domain	Domain
B [auth A], C [auth B]	IPR023415	Low-density lipoprotein (LDL) receptor class A, conserved site	Conserved Site
B [auth A], C [auth B]	IPR011042	Six-bladed beta-propeller, TolB-like	Homologous Superfamily
B [auth A], C [auth B]	IPR049883	NOTCH1, EGF-like calcium-binding domain	Domain
B [auth A], C [auth B]	IPR002172	Low-density lipoprotein (LDL) receptor class A repeat	Repeat
B [auth A], C [auth B]	IPR000742	EGF-like domain	Domain
B [auth A], C [auth B]	IPR051221	Low-density lipoprotein receptor-related	Family
B [auth A], C [auth B]	IPR056588	LRP2, EGF-like domain	Domain
B [auth A], C [auth B]	IPR009030	Growth factor receptor cysteine-rich domain superfamily	Homologous Superfamily
B [auth A], C [auth B]	IPR000152	EGF-type aspartate/asparagine hydroxylation site	PTM
A [auth C]	IPR036744	RAP domain superfamily	Homologous Superfamily
A [auth C]	IPR038003	Alpha-2-macroglobulin receptor-associated protein	Family
A [auth C]	IPR010483	Alpha-2-macroglobulin RAP, C-terminal	Domain
A [auth C]	IPR037999	Alpha-2-macroglobulin RAP, domain 3	Domain
A [auth C]	IPR009066	Alpha-2-macroglobulin receptor-associated protein, domain 1	Domain
A [auth C]	IPR038001	Alpha-2-macroglobulin RAP, domain 2	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8JXI | pdb_00008jxi

rat megalin RAP complex wingB

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage