8OLB | pdb_00008olb

SA11 Rotavirus Non-tripsinized Triple Layered Particle

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
AA [auth N]	UcrQ	e8olbN1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UcrQ	ECOD (v295)
R [auth E]	UcrQ	e8olbE1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UcrQ	ECOD (v295)
S [auth F]	UcrQ	e8olbF1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UcrQ	ECOD (v295)
T [auth G]	UcrQ	e8olbG1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UcrQ	ECOD (v295)
V [auth I]	UcrQ	e8olbI1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UcrQ	ECOD (v295)
W [auth J]	UcrQ	e8olbJ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UcrQ	ECOD (v295)
Z [auth M]	UcrQ	e8olbM1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UcrQ	ECOD (v295)
Y [auth L]	UcrQ	e8olbL1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UcrQ	ECOD (v295)
X [auth K]	UcrQ	e8olbK1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UcrQ	ECOD (v295)
U [auth H]	UcrQ	e8olbH1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UcrQ	ECOD (v295)
Q [auth D]	UcrQ	e8olbD1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UcrQ	ECOD (v295)
P [auth C]	UcrQ	e8olbC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UcrQ	ECOD (v295)
BA [auth O]	UcrQ	e8olbO1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UcrQ	ECOD (v295)
C [auth c]		e8olbc01	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
D [auth d]	UcrQ	e8olbd1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UcrQ	ECOD (v295)
E [auth e]	UcrQ	e8olbe1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UcrQ	ECOD (v295)
F [auth f]	UcrQ	e8olbf1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UcrQ	ECOD (v295)
G [auth g]	UcrQ	e8olbg1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UcrQ	ECOD (v295)
J [auth j]	UcrQ	e8olbj1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UcrQ	ECOD (v295)
K [auth k]	UcrQ	e8olbk1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UcrQ	ECOD (v295)
L [auth l]	UcrQ	e8olbl1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UcrQ	ECOD (v295)
M [auth m]	UcrQ	e8olbm1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UcrQ	ECOD (v295)
N [auth n]	UcrQ	e8olbn1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UcrQ	ECOD (v295)
O [auth o]	UcrQ	e8olbo1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UcrQ	ECOD (v295)
I [auth i]	UcrQ	e8olbi1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UcrQ	ECOD (v295)
H [auth h]	UcrQ	e8olbh1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UcrQ	ECOD (v295)
B	UcrQ	e8olbB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UcrQ	ECOD (v295)
A		e8olbA01	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth N], BA [auth O], P [auth C], Q [auth D], R [auth E], AA [auth N], BA [auth O], P [auth C], Q [auth D], R [auth E], S [auth F], T [auth G], U [auth H], V [auth I], W [auth J], X [auth K], Y [auth L], Z [auth M]	Intermediate capsid protein VP6	structural molecule activity cation binding ion binding binding metal ion binding small molecule binding host cell surface binding host cell surface receptor binding	membrane organization cellular component organization membrane fusion fusion of virus membrane with host plasma membrane viral process cellular process cellular component organization or biogenesis membrane fusion involved in viral entry into host cell	virion component viral membrane viral envelope viral capsid icosahedral viral capsid T=13 icosahedral viral capsid viral intermediate capsid
C [auth c], D [auth d], E [auth e], F [auth f], G [auth g], C [auth c], D [auth d], E [auth e], F [auth f], G [auth g], H [auth h], I [auth i], J [auth j], K [auth k], L [auth l], M [auth m], N [auth n], O [auth o]	Outer capsid glycoprotein VP7	cation binding ion binding binding metal ion binding small molecule binding	virion attachment to host cell biological process involved in interspecies interaction between organisms receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host cell endoplasmic reticulum lumen host intracellular region viral capsid icosahedral viral capsid host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host cell endoplasmic reticulum lumen host intracellular region viral capsid icosahedral viral capsid virion component viral outer capsid T=13 icosahedral viral capsid
A, B	Inner capsid protein VP2	RNA binding binding nucleic acid binding	-	viral capsid icosahedral viral capsid virion component viral inner capsid viral nucleocapsid T=2 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth N], BA [auth O], P [auth C], Q [auth D], R [auth E], AA [auth N], BA [auth O], P [auth C], Q [auth D], R [auth E], S [auth F], T [auth G], U [auth H], V [auth I], W [auth J], X [auth K], Y [auth L], Z [auth M]	IPR001385	Rotavirus A/C, major capsid protein VP6	Family
AA [auth N], BA [auth O], P [auth C], Q [auth D], R [auth E], AA [auth N], BA [auth O], P [auth C], Q [auth D], R [auth E], S [auth F], T [auth G], U [auth H], V [auth I], W [auth J], X [auth K], Y [auth L], Z [auth M]	IPR008935	Virus capsid protein, alpha-helical	Homologous Superfamily
AA [auth N], BA [auth O], P [auth C], Q [auth D], R [auth E], AA [auth N], BA [auth O], P [auth C], Q [auth D], R [auth E], S [auth F], T [auth G], U [auth H], V [auth I], W [auth J], X [auth K], Y [auth L], Z [auth M]	IPR008980	Viral capsid/haemagglutinin protein	Homologous Superfamily
C [auth c], D [auth d], E [auth e], F [auth f], G [auth g], C [auth c], D [auth d], E [auth e], F [auth f], G [auth g], H [auth h], I [auth i], J [auth j], K [auth k], L [auth l], M [auth m], N [auth n], O [auth o]	IPR042207	Glycoprotein VP7, domain 1	Homologous Superfamily
C [auth c], D [auth d], E [auth e], F [auth f], G [auth g], C [auth c], D [auth d], E [auth e], F [auth f], G [auth g], H [auth h], I [auth i], J [auth j], K [auth k], L [auth l], M [auth m], N [auth n], O [auth o]	IPR001963	Glycoprotein VP7	Family
C [auth c], D [auth d], E [auth e], F [auth f], G [auth g], C [auth c], D [auth d], E [auth e], F [auth f], G [auth g], H [auth h], I [auth i], J [auth j], K [auth k], L [auth l], M [auth m], N [auth n], O [auth o]	IPR042210	Glycoprotein VP7, domain 2	Homologous Superfamily
A, B	IPR007779	Rotavirus VP2	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.