8OPJ | pdb_00008opj

Global refinement of cubic assembly from truncated PVY coat protein with K176C mutation

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth Az]	UcrQ	e8opjAz1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
Y [auth Ay]	UcrQ	e8opjAy1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
X [auth Ax]	UcrQ	e8opjAx1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
W [auth Aw]	UcrQ	e8opjAw1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
VA [auth Bv]	UcrQ	e8opjBv1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
V [auth Av]	UcrQ	e8opjAv1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
UA [auth Bu]	UcrQ	e8opjBu1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
U [auth Au]	UcrQ	e8opjAu1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
TA [auth Bt]	UcrQ	e8opjBt1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
T [auth At]	UcrQ	e8opjAt1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
SA [auth Bs]	UcrQ	e8opjBs1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
S [auth As]	UcrQ	e8opjAs1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
RA [auth Br]	UcrQ	e8opjBr1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
R [auth Ar]	UcrQ	e8opjAr1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
QA [auth Bq]	UcrQ	e8opjBq1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
Q [auth Aq]	UcrQ	e8opjAq1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
PA [auth Bp]	UcrQ	e8opjBp1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
P [auth Ap]	UcrQ	e8opjAp1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
OA [auth Bo]	UcrQ	e8opjBo1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
O [auth Ao]	UcrQ	e8opjAo1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
NA [auth Bn]	UcrQ	e8opjBn1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
N [auth An]	UcrQ	e8opjAn1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
MA [auth Bm]	UcrQ	e8opjBm1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
M [auth Am]	UcrQ	e8opjAm1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
LA [auth Bl]	UcrQ	e8opjBl1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
L [auth Al]	UcrQ	e8opjAl1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
KA [auth Bk]	UcrQ	e8opjBk1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
K [auth Ak]	UcrQ	e8opjAk1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
JA [auth Bj]	UcrQ	e8opjBj1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
J [auth Aj]	UcrQ	e8opjAj1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
IA [auth Bi]	UcrQ	e8opjBi1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
I [auth Ai]	UcrQ	e8opjAi1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
HA [auth Bh]	UcrQ	e8opjBh1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
H [auth Ah]	UcrQ	e8opjAh1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
GA [auth Bg]	UcrQ	e8opjBg1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
G [auth Ag]	UcrQ	e8opjAg1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
FA [auth Bf]	UcrQ	e8opjBf1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
F [auth Af]	UcrQ	e8opjAf1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
EA [auth Be]	UcrQ	e8opjBe1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
E [auth Ae]	UcrQ	e8opjAe1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
DA [auth Bd]	UcrQ	e8opjBd1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
D [auth Ad]	UcrQ	e8opjAd1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
CA [auth Bc]	UcrQ	e8opjBc1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
C [auth Ac]	UcrQ	e8opjAc1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
BA [auth Bb]	UcrQ	e8opjBb1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
B [auth Ab]	UcrQ	e8opjAb1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
AA [auth Ba]	UcrQ	e8opjBa1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
A [auth Aa]	Lin-28A-like_zf-CCHC_2	e8opjAa01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Lin-28A-like_zf-CCHC_2	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], CA [auth Bc], D [auth Ad], DA [auth Bd], E [auth Ae], EA [auth Be], F [auth Af], FA [auth Bf], G [auth Ag], GA [auth Bg], H [auth Ah], HA [auth Bh], I [auth Ai], IA [auth Bi], J [auth Aj], JA [auth Bj], K [auth Ak], KA [auth Bk], L [auth Al], LA [auth Bl], M [auth Am], MA [auth Bm], N [auth An], NA [auth Bn], O [auth Ao], OA [auth Bo], P [auth Ap], PA [auth Bp], Q [auth Aq], QA [auth Bq], R [auth Ar], RA [auth Br], S [auth As], SA [auth Bs], T [auth At], TA [auth Bt], U [auth Au], UA [auth Bu], V [auth Av], VA [auth Bv], W [auth Aw], X [auth Ax], Y [auth Ay], Z [auth Az]	Genome polyprotein (Fragment)	nucleic acid conformation isomerase activity isomerase activity catalytic activity, acting on a nucleic acid helicase activity macromolecular conformation isomerase activity catalytic activity ATP-dependent activity cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein cysteine-type endopeptidase activity hydrolase activity endopeptidase activity RNA-directed RNA polymerase activity nucleic acid conformation isomerase activity isomerase activity catalytic activity, acting on a nucleic acid helicase activity macromolecular conformation isomerase activity catalytic activity ATP-dependent activity cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein cysteine-type endopeptidase activity hydrolase activity endopeptidase activity RNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA RNA polymerase activity transferase activity nucleotidyltransferase activity transferase activity, transferring phosphorus-containing groups serine hydrolase activity serine-type peptidase activity RNA binding binding nucleic acid binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity, acting on acid anhydrides structural molecule activity	RNA metabolic process viral life cycle primary metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process viral genome replication biosynthetic process viral RNA genome replication viral process metabolic process RNA metabolic process viral life cycle primary metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process viral genome replication biosynthetic process viral RNA genome replication viral process metabolic process cellular process macromolecule metabolic process gene expression DNA-templated transcription proteolysis protein metabolic process symbiont-mediated perturbation of host defense response symbiont-mediated suppression of host immune response biological process involved in interspecies interaction between organisms symbiont-mediated suppression of host innate immune response symbiont-mediated perturbation of host process symbiont-mediated perturbation of host immune response symbiont-mediated perturbation of host innate immune response modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle viral capsid virion component helical viral capsid host cell cytoplasm part host cell cytoplasmic vesicle host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle viral capsid virion component helical viral capsid host cell cytoplasm part host cell cytoplasmic vesicle host cell cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], CA [auth Bc], D [auth Ad], DA [auth Bd], E [auth Ae], EA [auth Be], F [auth Af], FA [auth Bf], G [auth Ag], GA [auth Bg], H [auth Ah], HA [auth Bh], I [auth Ai], IA [auth Bi], J [auth Aj], JA [auth Bj], K [auth Ak], KA [auth Bk], L [auth Al], LA [auth Bl], M [auth Am], MA [auth Bm], N [auth An], NA [auth Bn], O [auth Ao], OA [auth Bo], P [auth Ap], PA [auth Bp], Q [auth Aq], QA [auth Bq], R [auth Ar], RA [auth Br], S [auth As], SA [auth Bs], T [auth At], TA [auth Bt], U [auth Au], UA [auth Bu], V [auth Av], VA [auth Bv], W [auth Aw], X [auth Ax], Y [auth Ay], Z [auth Az]	IPR001205	RNA-directed RNA polymerase, C-terminal domain	Domain
A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], CA [auth Bc], D [auth Ad], DA [auth Bd], E [auth Ae], EA [auth Be], F [auth Af], FA [auth Bf], G [auth Ag], GA [auth Bg], H [auth Ah], HA [auth Bh], I [auth Ai], IA [auth Bi], J [auth Aj], JA [auth Bj], K [auth Ak], KA [auth Bk], L [auth Al], LA [auth Bl], M [auth Am], MA [auth Bm], N [auth An], NA [auth Bn], O [auth Ao], OA [auth Bo], P [auth Ap], PA [auth Bp], Q [auth Aq], QA [auth Bq], R [auth Ar], RA [auth Br], S [auth As], SA [auth Bs], T [auth At], TA [auth Bt], U [auth Au], UA [auth Bu], V [auth Av], VA [auth Bv], W [auth Aw], X [auth Ax], Y [auth Ay], Z [auth Az]	IPR001456	Helper component proteinase	Family
A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], CA [auth Bc], D [auth Ad], DA [auth Bd], E [auth Ae], EA [auth Be], F [auth Af], FA [auth Bf], G [auth Ag], GA [auth Bg], H [auth Ah], HA [auth Bh], I [auth Ai], IA [auth Bi], J [auth Aj], JA [auth Bj], K [auth Ak], KA [auth Bk], L [auth Al], LA [auth Bl], M [auth Am], MA [auth Bm], N [auth An], NA [auth Bn], O [auth Ao], OA [auth Bo], P [auth Ap], PA [auth Bp], Q [auth Aq], QA [auth Bq], R [auth Ar], RA [auth Br], S [auth As], SA [auth Bs], T [auth At], TA [auth Bt], U [auth Au], UA [auth Bu], V [auth Av], VA [auth Bv], W [auth Aw], X [auth Ax], Y [auth Ay], Z [auth Az]	IPR043128	Reverse transcriptase/Diguanylate cyclase domain	Homologous Superfamily
A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], CA [auth Bc], D [auth Ad], DA [auth Bd], E [auth Ae], EA [auth Be], F [auth Af], FA [auth Bf], G [auth Ag], GA [auth Bg], H [auth Ah], HA [auth Bh], I [auth Ai], IA [auth Bi], J [auth Aj], JA [auth Bj], K [auth Ak], KA [auth Bk], L [auth Al], LA [auth Bl], M [auth Am], MA [auth Bm], N [auth An], NA [auth Bn], O [auth Ao], OA [auth Bo], P [auth Ap], PA [auth Bp], Q [auth Aq], QA [auth Bq], R [auth Ar], RA [auth Br], S [auth As], SA [auth Bs], T [auth At], TA [auth Bt], U [auth Au], UA [auth Bu], V [auth Av], VA [auth Bv], W [auth Aw], X [auth Ax], Y [auth Ay], Z [auth Az]	IPR002540	Peptidase S30, polyprotein P1, potyvirus	Domain
A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], CA [auth Bc], D [auth Ad], DA [auth Bd], E [auth Ae], EA [auth Be], F [auth Af], FA [auth Bf], G [auth Ag], GA [auth Bg], H [auth Ah], HA [auth Bh], I [auth Ai], IA [auth Bi], J [auth Aj], JA [auth Bj], K [auth Ak], KA [auth Bk], L [auth Al], LA [auth Bl], M [auth Am], MA [auth Bm], N [auth An], NA [auth Bn], O [auth Ao], OA [auth Bo], P [auth Ap], PA [auth Bp], Q [auth Aq], QA [auth Bq], R [auth Ar], RA [auth Br], S [auth As], SA [auth Bs], T [auth At], TA [auth Bt], U [auth Au], UA [auth Bu], V [auth Av], VA [auth Bv], W [auth Aw], X [auth Ax], Y [auth Ay], Z [auth Az]	IPR013648	Polyprotein, Potyviridae	Domain
A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], CA [auth Bc], D [auth Ad], DA [auth Bd], E [auth Ae], EA [auth Be], F [auth Af], FA [auth Bf], G [auth Ag], GA [auth Bg], H [auth Ah], HA [auth Bh], I [auth Ai], IA [auth Bi], J [auth Aj], JA [auth Bj], K [auth Ak], KA [auth Bk], L [auth Al], LA [auth Bl], M [auth Am], MA [auth Bm], N [auth An], NA [auth Bn], O [auth Ao], OA [auth Bo], P [auth Ap], PA [auth Bp], Q [auth Aq], QA [auth Bq], R [auth Ar], RA [auth Br], S [auth As], SA [auth Bs], T [auth At], TA [auth Bt], U [auth Au], UA [auth Bu], V [auth Av], VA [auth Bv], W [auth Aw], X [auth Ax], Y [auth Ay], Z [auth Az]	IPR001730	Potyvirus NIa protease (NIa-pro) domain	Domain
A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], CA [auth Bc], D [auth Ad], DA [auth Bd], E [auth Ae], EA [auth Be], F [auth Af], FA [auth Bf], G [auth Ag], GA [auth Bg], H [auth Ah], HA [auth Bh], I [auth Ai], IA [auth Bi], J [auth Aj], JA [auth Bj], K [auth Ak], KA [auth Bk], L [auth Al], LA [auth Bl], M [auth Am], MA [auth Bm], N [auth An], NA [auth Bn], O [auth Ao], OA [auth Bo], P [auth Ap], PA [auth Bp], Q [auth Aq], QA [auth Bq], R [auth Ar], RA [auth Br], S [auth As], SA [auth Bs], T [auth At], TA [auth Bt], U [auth Au], UA [auth Bu], V [auth Av], VA [auth Bv], W [auth Aw], X [auth Ax], Y [auth Ay], Z [auth Az]	IPR011545	DEAD/DEAH-box helicase domain	Domain
A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], CA [auth Bc], D [auth Ad], DA [auth Bd], E [auth Ae], EA [auth Be], F [auth Af], FA [auth Bf], G [auth Ag], GA [auth Bg], H [auth Ah], HA [auth Bh], I [auth Ai], IA [auth Bi], J [auth Aj], JA [auth Bj], K [auth Ak], KA [auth Bk], L [auth Al], LA [auth Bl], M [auth Am], MA [auth Bm], N [auth An], NA [auth Bn], O [auth Ao], OA [auth Bo], P [auth Ap], PA [auth Bp], Q [auth Aq], QA [auth Bq], R [auth Ar], RA [auth Br], S [auth As], SA [auth Bs], T [auth At], TA [auth Bt], U [auth Au], UA [auth Bu], V [auth Av], VA [auth Bv], W [auth Aw], X [auth Ax], Y [auth Ay], Z [auth Az]	IPR031159	Helper-component proteinase (HC-Pro) cysteine protease (CPD) domain	Domain
A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], CA [auth Bc], D [auth Ad], DA [auth Bd], E [auth Ae], EA [auth Be], F [auth Af], FA [auth Bf], G [auth Ag], GA [auth Bg], H [auth Ah], HA [auth Bh], I [auth Ai], IA [auth Bi], J [auth Aj], JA [auth Bj], K [auth Ak], KA [auth Bk], L [auth Al], LA [auth Bl], M [auth Am], MA [auth Bm], N [auth An], NA [auth Bn], O [auth Ao], OA [auth Bo], P [auth Ap], PA [auth Bp], Q [auth Aq], QA [auth Bq], R [auth Ar], RA [auth Br], S [auth As], SA [auth Bs], T [auth At], TA [auth Bt], U [auth Au], UA [auth Bu], V [auth Av], VA [auth Bv], W [auth Aw], X [auth Ax], Y [auth Ay], Z [auth Az]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], CA [auth Bc], D [auth Ad], DA [auth Bd], E [auth Ae], EA [auth Be], F [auth Af], FA [auth Bf], G [auth Ag], GA [auth Bg], H [auth Ah], HA [auth Bh], I [auth Ai], IA [auth Bi], J [auth Aj], JA [auth Bj], K [auth Ak], KA [auth Bk], L [auth Al], LA [auth Bl], M [auth Am], MA [auth Bm], N [auth An], NA [auth Bn], O [auth Ao], OA [auth Bo], P [auth Ap], PA [auth Bp], Q [auth Aq], QA [auth Bq], R [auth Ar], RA [auth Br], S [auth As], SA [auth Bs], T [auth At], TA [auth Bt], U [auth Au], UA [auth Bu], V [auth Av], VA [auth Bv], W [auth Aw], X [auth Ax], Y [auth Ay], Z [auth Az]	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], CA [auth Bc], D [auth Ad], DA [auth Bd], E [auth Ae], EA [auth Be], F [auth Af], FA [auth Bf], G [auth Ag], GA [auth Bg], H [auth Ah], HA [auth Bh], I [auth Ai], IA [auth Bi], J [auth Aj], JA [auth Bj], K [auth Ak], KA [auth Bk], L [auth Al], LA [auth Bl], M [auth Am], MA [auth Bm], N [auth An], NA [auth Bn], O [auth Ao], OA [auth Bo], P [auth Ap], PA [auth Bp], Q [auth Aq], QA [auth Bq], R [auth Ar], RA [auth Br], S [auth As], SA [auth Bs], T [auth At], TA [auth Bt], U [auth Au], UA [auth Bu], V [auth Av], VA [auth Bv], W [auth Aw], X [auth Ax], Y [auth Ay], Z [auth Az]	IPR001650	Helicase, C-terminal domain-like	Domain
A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], CA [auth Bc], D [auth Ad], DA [auth Bd], E [auth Ae], EA [auth Be], F [auth Af], FA [auth Bf], G [auth Ag], GA [auth Bg], H [auth Ah], HA [auth Bh], I [auth Ai], IA [auth Bi], J [auth Aj], JA [auth Bj], K [auth Ak], KA [auth Bk], L [auth Al], LA [auth Bl], M [auth Am], MA [auth Bm], N [auth An], NA [auth Bn], O [auth Ao], OA [auth Bo], P [auth Ap], PA [auth Bp], Q [auth Aq], QA [auth Bq], R [auth Ar], RA [auth Br], S [auth As], SA [auth Bs], T [auth At], TA [auth Bt], U [auth Au], UA [auth Bu], V [auth Av], VA [auth Bv], W [auth Aw], X [auth Ax], Y [auth Ay], Z [auth Az]	IPR043502	DNA/RNA polymerase superfamily	Homologous Superfamily
A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], CA [auth Bc], D [auth Ad], DA [auth Bd], E [auth Ae], EA [auth Be], F [auth Af], FA [auth Bf], G [auth Ag], GA [auth Bg], H [auth Ah], HA [auth Bh], I [auth Ai], IA [auth Bi], J [auth Aj], JA [auth Bj], K [auth Ak], KA [auth Bk], L [auth Al], LA [auth Bl], M [auth Am], MA [auth Bm], N [auth An], NA [auth Bn], O [auth Ao], OA [auth Bo], P [auth Ap], PA [auth Bp], Q [auth Aq], QA [auth Bq], R [auth Ar], RA [auth Br], S [auth As], SA [auth Bs], T [auth At], TA [auth Bt], U [auth Au], UA [auth Bu], V [auth Av], VA [auth Bv], W [auth Aw], X [auth Ax], Y [auth Ay], Z [auth Az]	IPR014001	Helicase superfamily 1/2, ATP-binding domain	Domain
A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], CA [auth Bc], D [auth Ad], DA [auth Bd], E [auth Ae], EA [auth Be], F [auth Af], FA [auth Bf], G [auth Ag], GA [auth Bg], H [auth Ah], HA [auth Bh], I [auth Ai], IA [auth Bi], J [auth Aj], JA [auth Bj], K [auth Ak], KA [auth Bk], L [auth Al], LA [auth Bl], M [auth Am], MA [auth Bm], N [auth An], NA [auth Bn], O [auth Ao], OA [auth Bo], P [auth Ap], PA [auth Bp], Q [auth Aq], QA [auth Bq], R [auth Ar], RA [auth Br], S [auth As], SA [auth Bs], T [auth At], TA [auth Bt], U [auth Au], UA [auth Bu], V [auth Av], VA [auth Bv], W [auth Aw], X [auth Ax], Y [auth Ay], Z [auth Az]	IPR001592	Potyvirus coat protein	Family
A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], CA [auth Bc], D [auth Ad], DA [auth Bd], E [auth Ae], EA [auth Be], F [auth Af], FA [auth Bf], G [auth Ag], GA [auth Bg], H [auth Ah], HA [auth Bh], I [auth Ai], IA [auth Bi], J [auth Aj], JA [auth Bj], K [auth Ak], KA [auth Bk], L [auth Al], LA [auth Bl], M [auth Am], MA [auth Bm], N [auth An], NA [auth Bn], O [auth Ao], OA [auth Bo], P [auth Ap], PA [auth Bp], Q [auth Aq], QA [auth Bq], R [auth Ar], RA [auth Br], S [auth As], SA [auth Bs], T [auth At], TA [auth Bt], U [auth Au], UA [auth Bu], V [auth Av], VA [auth Bv], W [auth Aw], X [auth Ax], Y [auth Ay], Z [auth Az]	IPR039560	Potyviral polyprotein protein 3	Domain
A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], CA [auth Bc], D [auth Ad], DA [auth Bd], E [auth Ae], EA [auth Be], F [auth Af], FA [auth Bf], G [auth Ag], GA [auth Bg], H [auth Ah], HA [auth Bh], I [auth Ai], IA [auth Bi], J [auth Aj], JA [auth Bj], K [auth Ak], KA [auth Bk], L [auth Al], LA [auth Bl], M [auth Am], MA [auth Bm], N [auth An], NA [auth Bn], O [auth Ao], OA [auth Bo], P [auth Ap], PA [auth Bp], Q [auth Aq], QA [auth Bq], R [auth Ar], RA [auth Br], S [auth As], SA [auth Bs], T [auth At], TA [auth Bt], U [auth Au], UA [auth Bu], V [auth Av], VA [auth Bv], W [auth Aw], X [auth Ax], Y [auth Ay], Z [auth Az]	IPR007094	RNA-directed RNA polymerase, catalytic domain	Domain
A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], A [auth Aa], AA [auth Ba], B [auth Ab], BA [auth Bb], C [auth Ac], CA [auth Bc], D [auth Ad], DA [auth Bd], E [auth Ae], EA [auth Be], F [auth Af], FA [auth Bf], G [auth Ag], GA [auth Bg], H [auth Ah], HA [auth Bh], I [auth Ai], IA [auth Bi], J [auth Aj], JA [auth Bj], K [auth Ak], KA [auth Bk], L [auth Al], LA [auth Bl], M [auth Am], MA [auth Bm], N [auth An], NA [auth Bn], O [auth Ao], OA [auth Bo], P [auth Ap], PA [auth Bp], Q [auth Aq], QA [auth Bq], R [auth Ar], RA [auth Br], S [auth As], SA [auth Bs], T [auth At], TA [auth Bt], U [auth Au], UA [auth Bu], V [auth Av], VA [auth Bv], W [auth Aw], X [auth Ax], Y [auth Ay], Z [auth Az]	IPR042308	Helper-component proteinase (HC-Pro) cysteine protease (CPD) domain superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.