Annotations: 8PR2

Cytoplasmic dynein-1 heavy chain bound to JIP3-LZI

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E [auth j]	DNA_topoisoIV	e8pr2j1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
D [auth h]	DNA_topoisoIV	e8pr2h1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
F [auth m]	DNA_topoisoIV	e8pr2m1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
C [auth f]	DNA_topoisoIV	e8pr2f1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth j]	Cytoplasmic dynein 1 light intermediate chain 2	protein binding binding dynein heavy chain binding identical protein binding	microtubule-based movement microtubule-based process cellular process regulation of localization regulation of biological process cellular localization regulation of cellular process transport regulation of transport biological regulation positive regulation of biological process intracellular transport establishment of localization localization microtubule-based movement microtubule-based process cellular process regulation of localization regulation of biological process cellular localization regulation of cellular process transport regulation of transport biological regulation positive regulation of biological process intracellular transport establishment of localization localization positive regulation of transport regulation of cellular localization establishment of localization in cell positive regulation of intracellular transport positive regulation of cellular process regulation of intracellular transport cellular component organization organelle organization microtubule cytoskeleton organization cellular component organization or biogenesis cytoskeleton organization cellular response to endogenous stimulus cellular response to growth factor stimulus response to stimulus response to endogenous stimulus cellular response to nerve growth factor stimulus response to nerve growth factor response to growth factor	cellular anatomical structure membrane intracellular anatomical structure intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle organelle membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome cellular anatomical structure membrane intracellular anatomical structure intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle organelle membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome centrosome microtubule organizing center cytoskeleton microtubule cytoskeleton cytoplasm cytosol membrane-bounded organelle endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system cytoplasmic vesicle late endosome vesicle male germ cell nucleus nucleus germ cell nucleus protein-containing complex cytoplasmic dynein complex catalytic complex dynein complex microtubule associated complex
D [auth h]	Cytoplasmic dynein 1 intermediate chain 2	protein binding binding dynein heavy chain binding dynein light chain binding microtubule motor activity polypeptide conformation or assembly isomerase activity isomerase activity cytoskeletal motor activity macromolecular conformation isomerase activity catalytic activity ATP-dependent activity	microtubule-based movement microtubule-based process cellular process regulation of localization regulation of biological process cellular localization regulation of cellular process transport regulation of transport biological regulation positive regulation of biological process intracellular transport establishment of localization localization microtubule-based movement microtubule-based process cellular process regulation of localization regulation of biological process cellular localization regulation of cellular process transport regulation of transport biological regulation positive regulation of biological process intracellular transport establishment of localization localization positive regulation of transport regulation of cellular localization establishment of localization in cell positive regulation of intracellular transport positive regulation of cellular process regulation of intracellular transport cellular response to stimulus positive regulation of cell communication regulation of cell cycle phase transition positive regulation of signal transduction response to stimulus positive regulation of cell cycle checkpoint negative regulation of biological process spindle checkpoint signaling negative regulation of cell cycle regulation of signal transduction regulation of mitotic nuclear division intracellular signal transduction negative regulation of mitotic cell cycle cell communication regulation of cell cycle checkpoint negative regulation of mitotic sister chromatid segregation negative regulation of chromosome organization negative regulation of cell cycle phase transition mitotic spindle checkpoint signaling signal transduction cell cycle mitotic sister chromatid separation chromosome segregation negative regulation of sister chromatid segregation mitotic spindle assembly checkpoint signaling negative regulation of cellular component organization regulation of cell cycle process regulation of spindle checkpoint sister chromatid segregation positive regulation of intracellular signal transduction regulation of chromosome organization regulation of organelle organization regulation of mitotic cell cycle phase transition regulation of mitotic sister chromatid segregation mitotic cell cycle process regulation of response to stimulus positive regulation of mitotic cell cycle spindle assembly checkpoint regulation of chromosome separation negative regulation of mitotic nuclear division regulation of chromosome segregation regulation of cellular component organization regulation of mitotic sister chromatid separation regulation of metaphase/anaphase transition of cell cycle regulation of mitotic spindle checkpoint signaling regulation of mitotic cell cycle spindle assembly checkpoint spindle assembly checkpoint signaling cell cycle phase transition regulation of mitotic metaphase/anaphase transition mitotic cell cycle cellular component organization positive regulation of response to stimulus regulation of mitotic cell cycle regulation of intracellular signal transduction negative regulation of cellular process mitotic sister chromatid segregation positive regulation of cell cycle process negative regulation of mitotic metaphase/anaphase transition cellular component organization or biogenesis regulation of cell cycle negative regulation of chromosome separation cell cycle process positive regulation of spindle checkpoint mitotic nuclear division regulation of signaling negative regulation of mitotic cell cycle phase transition organelle fission chromosome organization negative regulation of cell cycle process positive regulation of cell cycle cell cycle checkpoint signaling mitotic cell cycle checkpoint signaling organelle organization nuclear division negative regulation of chromosome segregation negative regulation of nuclear division negative regulation of organelle organization chromosome separation regulation of sister chromatid segregation negative regulation of mitotic sister chromatid separation regulation of nuclear division negative regulation of metaphase/anaphase transition of cell cycle nuclear chromosome segregation metaphase/anaphase transition of mitotic cell cycle regulation of cell communication metaphase/anaphase transition of cell cycle mitotic cell cycle phase transition positive regulation of signaling microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport	membrane-bounded organelle cellular anatomical structure organelle vesicle intracellular organelle centrosome microtubule organizing center intracellular anatomical structure cytoskeleton membraneless organelle intracellular membraneless organelle microtubule cytoskeleton cytoplasm cytosol membrane-bounded organelle cellular anatomical structure organelle vesicle intracellular organelle centrosome microtubule organizing center intracellular anatomical structure cytoskeleton membraneless organelle intracellular membraneless organelle microtubule cytoskeleton cytoplasm cytosol protein-containing complex outer dynein arm catalytic complex axoneme ciliary plasm axonemal dynein complex dynein complex cilium plasma membrane bounded cell projection cell projection microtubule associated complex male germ cell nucleus nucleus germ cell nucleus intracellular membrane-bounded organelle cytoplasmic dynein complex polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex
C [auth f], F [auth m]	Cytoplasmic dynein 1 heavy chain 1	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding dynein light intermediate chain binding protein binding microtubule motor activity polypeptide conformation or assembly isomerase activity isomerase activity cytoskeletal motor activity minus-end-directed microtubule motor activity macromolecular conformation isomerase activity catalytic activity ATP-dependent activity dynein intermediate chain binding identical protein binding RNA binding nucleic acid binding	cellular response to stimulus positive regulation of cell communication regulation of cellular process regulation of cell cycle phase transition positive regulation of signal transduction response to stimulus positive regulation of cell cycle checkpoint negative regulation of biological process spindle checkpoint signaling negative regulation of cell cycle regulation of signal transduction regulation of mitotic nuclear division intracellular signal transduction negative regulation of mitotic cell cycle cell communication cellular response to stimulus positive regulation of cell communication regulation of cellular process regulation of cell cycle phase transition positive regulation of signal transduction response to stimulus positive regulation of cell cycle checkpoint negative regulation of biological process spindle checkpoint signaling negative regulation of cell cycle regulation of signal transduction regulation of mitotic nuclear division intracellular signal transduction negative regulation of mitotic cell cycle cell communication regulation of cell cycle checkpoint negative regulation of mitotic sister chromatid segregation negative regulation of chromosome organization negative regulation of cell cycle phase transition mitotic spindle checkpoint signaling signal transduction cell cycle mitotic sister chromatid separation chromosome segregation negative regulation of sister chromatid segregation mitotic spindle assembly checkpoint signaling regulation of biological process negative regulation of cellular component organization regulation of cell cycle process regulation of spindle checkpoint sister chromatid segregation positive regulation of intracellular signal transduction regulation of chromosome organization regulation of organelle organization regulation of mitotic cell cycle phase transition regulation of mitotic sister chromatid segregation mitotic cell cycle process regulation of response to stimulus positive regulation of mitotic cell cycle spindle assembly checkpoint regulation of chromosome separation negative regulation of mitotic nuclear division regulation of chromosome segregation regulation of cellular component organization regulation of mitotic sister chromatid separation regulation of metaphase/anaphase transition of cell cycle regulation of mitotic spindle checkpoint signaling regulation of mitotic cell cycle spindle assembly checkpoint spindle assembly checkpoint signaling positive regulation of biological process cell cycle phase transition regulation of mitotic metaphase/anaphase transition mitotic cell cycle cellular component organization positive regulation of response to stimulus regulation of mitotic cell cycle regulation of intracellular signal transduction negative regulation of cellular process mitotic sister chromatid segregation positive regulation of cell cycle process negative regulation of mitotic metaphase/anaphase transition cellular component organization or biogenesis regulation of cell cycle negative regulation of chromosome separation positive regulation of cellular process cell cycle process positive regulation of spindle checkpoint mitotic nuclear division regulation of signaling negative regulation of mitotic cell cycle phase transition organelle fission biological regulation chromosome organization negative regulation of cell cycle process positive regulation of cell cycle cell cycle checkpoint signaling mitotic cell cycle checkpoint signaling organelle organization nuclear division negative regulation of chromosome segregation negative regulation of nuclear division negative regulation of organelle organization chromosome separation regulation of sister chromatid segregation negative regulation of mitotic sister chromatid separation regulation of nuclear division negative regulation of metaphase/anaphase transition of cell cycle nuclear chromosome segregation metaphase/anaphase transition of mitotic cell cycle regulation of cell communication cellular process metaphase/anaphase transition of cell cycle mitotic cell cycle phase transition positive regulation of signaling establishment of organelle localization cellular localization transport nucleus localization intracellular transport establishment of localization localization organelle localization establishment of localization in cell nuclear migration cellular component biogenesis cellular component assembly organelle assembly P-body assembly membraneless organelle assembly cytoplasmic stress granule assembly microtubule cytoskeleton organization spindle localization establishment of spindle localization microtubule-based process cytoskeleton organization regulation of localization metaphase chromosome alignment chromosome localization regulation of metaphase plate congression positive regulation of organelle organization regulation of cytoskeleton organization positive regulation of cellular component organization positive regulation of spindle assembly spindle organization positive regulation of cellular component biogenesis positive regulation of cytoskeleton organization regulation of microtubule-based process regulation of spindle organization regulation of cellular component biogenesis spindle assembly regulation of spindle assembly regulation of organelle assembly regulation of microtubule cytoskeleton organization positive regulation of organelle assembly regulation of mitotic spindle organization microtubule cytoskeleton organization involved in mitosis mitotic spindle organization cytoplasmic microtubule organization supramolecular fiber organization multicellular organismal process homeostatic process adaptive thermogenesis multicellular organismal-level homeostasis regulation of cold-induced thermogenesis cold-induced thermogenesis temperature homeostasis positive regulation of cold-induced thermogenesis positive regulation of multicellular organismal process regulation of multicellular organismal process regulation of transport positive regulation of transport regulation of cellular localization positive regulation of intracellular transport regulation of intracellular transport retrograde axonal transport axonal transport axo-dendritic transport microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport microtubule-based movement	cellular anatomical structure membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol intracellular organelle cellular anatomical structure membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol intracellular organelle male germ cell nucleus nucleus germ cell nucleus intracellular membrane-bounded organelle protein-containing complex cytoplasmic dynein complex catalytic complex dynein complex intracellular membraneless organelle cytoskeleton membraneless organelle microtubule associated complex microtubule cytoskeleton actin cytoskeleton plasma membrane bounded cell projection cell projection actin-based cell projection filopodium polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex neuron projection cytoplasm axon axon cytoplasm neuron projection cell periphery cell cortex centrosome microtubule organizing center lytic vacuole intracellular vesicle membrane-enclosed lumen cytoplasmic vesicle lumen vacuolar lumen endomembrane system intracellular organelle lumen cytoplasmic vesicle lysosome vesicle lumen azurophil granule vacuole secretory granule lumen azurophil granule lumen organelle lumen secretory granule primary lysosome secretory vesicle cytoplasmic microtubule
A [auth B], B [auth C]	C-Jun-amino-terminal kinase-interacting protein 3	JUN kinase binding protein binding binding kinase binding enzyme binding protein kinase binding cytoskeletal protein binding kinesin binding protein complex scaffold activity structural molecule activity protein-macromolecule adaptor activity MAP kinase scaffold activity molecular adaptor activity signaling adaptor activity JUN kinase binding protein binding binding kinase binding enzyme binding protein kinase binding cytoskeletal protein binding kinesin binding protein complex scaffold activity structural molecule activity protein-macromolecule adaptor activity MAP kinase scaffold activity molecular adaptor activity signaling adaptor activity signaling receptor complex adaptor activity	establishment of protein localization cellular localization protein localization to synapse transport protein transport along microtubule microtubule-based protein transport localization establishment of localization in cell transport along microtubule intracellular protein localization anterograde axonal transport axo-dendritic protein transport anterograde axonal protein transport intracellular transport establishment of protein localization cellular localization protein localization to synapse transport protein transport along microtubule microtubule-based protein transport localization establishment of localization in cell transport along microtubule intracellular protein localization anterograde axonal transport axo-dendritic protein transport anterograde axonal protein transport intracellular transport axonal transport establishment of localization protein localization to presynapse axo-dendritic transport protein transport macromolecule localization microtubule-based transport cellular process cytoskeleton-dependent intracellular transport microtubule-based movement microtubule-based process protein localization to cell junction intracellular protein transport regulation of protein stability biological regulation regulation of biological quality protein stabilization cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process response to stimulus signaling regulation of JNK cascade regulation of signal transduction regulation of MAPK cascade intracellular signal transduction cell communication regulation of intracellular signal transduction regulation of response to stimulus JNK cascade intracellular signaling cassette MAPK cascade regulation of cell communication signal transduction negative regulation of programmed cell death regulation of apoptotic process negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death developmental process multicellular organismal process plasma membrane bounded cell projection organization cellular developmental process cell projection organization cell development neuron projection development nervous system development axon development cellular component organization generation of neurons neurogenesis multicellular organism development neuron differentiation cell differentiation neuron development anatomical structure development cellular component organization or biogenesis animal gross anatomical part developmental process system development positive regulation of cell communication positive regulation of signal transduction positive regulation of biological process positive regulation of response to stimulus positive regulation of JNK cascade positive regulation of cellular process positive regulation of MAPK cascade positive regulation of intracellular signal transduction positive regulation of signaling regeneration response to axon injury neuron projection regeneration axon regeneration cellular response to stress response to stress response to wounding vesicle-mediated transport	somatodendritic compartment cell projection cellular anatomical structure dendrite dendritic tree neuron projection plasma membrane bounded cell projection intracellular anatomical structure cytoplasm growth cone axon distal axon site of polarized growth membrane-bounded organelle somatodendritic compartment cell projection cellular anatomical structure dendrite dendritic tree neuron projection plasma membrane bounded cell projection intracellular anatomical structure cytoplasm growth cone axon distal axon site of polarized growth membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle intracellular vesicle intracellular membrane-bounded organelle vesicle Golgi apparatus endomembrane system Golgi membrane membrane bounding membrane of organelle organelle membrane perinuclear region of cytoplasm cell body neuron projection cytoplasm axon cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth j]	IPR022780	Dynein family light intermediate chain	Family
E [auth j]	IPR008467	Dynein 1 light intermediate chain	Family
E [auth j]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
D [auth h]	IPR025956	Cytoplasmic dynein 1 intermediate chain 1/2	Family
D [auth h]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
D [auth h]	IPR001680	WD40 repeat	Repeat
D [auth h]	IPR050687	Dynein axonemal intermediate chain 1/2/3/4	Family
D [auth h]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
C [auth f], F [auth m]	IPR026983	Dynein heavy chain	Family
C [auth f], F [auth m]	IPR013602	Dynein heavy chain, linker	Domain
C [auth f], F [auth m]	IPR041658	Dynein heavy chain, AAA lid domain	Domain
C [auth f], F [auth m]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
C [auth f], F [auth m]	IPR042222	Dynein heavy chain, domain 2, N-terminal	Homologous Superfamily
C [auth f], F [auth m]	IPR043160	Dynein heavy chain, C-terminal domain, barrel region	Homologous Superfamily
C [auth f], F [auth m]	IPR042219	Dynein heavy chain, AAA lid domain superfamily	Homologous Superfamily
C [auth f], F [auth m]	IPR035706	Dynein heavy chain, ATP-binding dynein motor region	Domain
C [auth f], F [auth m]	IPR041228	Dynein heavy chain, C-terminal domain	Domain
C [auth f], F [auth m]	IPR054354	Dynein 2 heavy chain 1, cytoplasmic, ATPase lid domain	Domain
C [auth f], F [auth m]	IPR003593	AAA+ ATPase domain	Domain
C [auth f], F [auth m]	IPR041466	Dynein heavy chain, AAA 5 extension domain	Domain
C [auth f], F [auth m]	IPR042228	Dynein heavy chain, linker, subdomain 3	Homologous Superfamily
C [auth f], F [auth m]	IPR035699	Dynein heavy chain, hydrolytic ATP-binding dynein motor region	Domain
C [auth f], F [auth m]	IPR024743	Dynein heavy chain, coiled coil stalk	Domain
C [auth f], F [auth m]	IPR013594	Dynein heavy chain, tail	Domain
C [auth f], F [auth m]	IPR043157	Dynein heavy chain, AAA1 domain, small subdomain	Homologous Superfamily
C [auth f], F [auth m]	IPR004273	Dynein heavy chain, D6 P-loop domain	Domain
C [auth f], F [auth m]	IPR024317	Dynein heavy chain, AAA module D4	Domain
A [auth B], B [auth C]	IPR034743	RH1 domain	Domain
A [auth B], B [auth C]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
A [auth B], B [auth C]	IPR034744	RH2 domain	Domain
A [auth B], B [auth C]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A [auth B], B [auth C]	IPR039911	JNK-interacting protein 3/4	Family
A [auth B], B [auth C]	IPR032486	JNK-interacting protein, leucine zipper II	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
E [auth j]	: O43237	Weight Gain juvenile dermatomyositis medulloblastoma ovarian cancer large cell medulloblastoma myopathy pancreatic ductal adenocarcinoma malignant pancreatic neoplasm osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia
D [auth h]	: Q13409	Beckwith-Wiedemann syndrome
C [auth f], F [auth m]	: Q14204	Charcot-Marie-Tooth disease intellectual disability, autosomal dominant 13 Charcot-Marie-Tooth disease axonal type 2O intellectual disability microcephaly autosomal dominant childhood-onset proximal spinal muscular atrophy without contractures peripheral neuropathy spinal muscular atrophy, type III Mental Retardation, Psychosocial motor peripheral neuropathy neurodegenerative disease peripheral nervous system disease astrocytic tumor cerebral cortical dysplasia lung cancer Charcot-Marie-Tooth disease intellectual disability, autosomal dominant 13 Charcot-Marie-Tooth disease axonal type 2O intellectual disability microcephaly autosomal dominant childhood-onset proximal spinal muscular atrophy without contractures peripheral neuropathy spinal muscular atrophy, type III Mental Retardation, Psychosocial motor peripheral neuropathy neurodegenerative disease peripheral nervous system disease astrocytic tumor cerebral cortical dysplasia lung cancer malignant mesothelioma osteosarcoma spinal muscular atrophy, type 1 diabetes mellitus thyroid gland papillary carcinoma familial nonmedullary thyroid carcinoma microlissencephaly ovarian cancer Pick disease spinal muscular atrophy juvenile dermatomyositis malignant ependymoma
A [auth B], B [auth C]	: Q9UPT6	polycystic ovary syndrome atrial fibrillation glioblastoma malignant glioma Sjogren syndrome atypical teratoid rhabdoid tumor large cell medulloblastoma medulloblastoma primitive neuroectodermal tumor skin disease epilepsy malignant ependymoma pilocytic astrocytoma Sclerocystic Ovaries subependymal giant cell astrocytoma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8PR2 | pdb_00008pr2

Cytoplasmic dynein-1 heavy chain bound to JIP3-LZI

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Pharos: Disease Associations Pharos Homepage Annotation