8PV4

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
M [auth CN]SCOP2B SuperfamilyPentein 8084662 3000640 SCOP2B (2022-06-29)
CA [auth LB]SCOP2B SuperfamilyTranslational proteins 8106162 3000811 SCOP2B (2022-06-29)
NA [auth LN]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8106168 3000210 SCOP2B (2022-06-29)
RA [auth LR]SCOP2B SuperfamilyRibosomal protein L19 (L19e) 8106186 3000890 SCOP2B (2022-06-29)
UA [auth LU]SCOP2B Superfamily60S Ribosomal protein L22e 8106192 3002158 SCOP2B (2022-06-29)
XA [auth LY]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8106166 3000334 SCOP2B (2022-06-29)
AB [auth Lc]SCOP2B SuperfamilyL30e-like 8106196 3001739 SCOP2B (2022-06-29)
CB [auth Le]SCOP2B SuperfamilyRibosomal protein L32e 8106182 3000982 SCOP2B (2022-06-29)
DB [auth Lf]SCOP2B SuperfamilyTranslational proteins 8106190 3000811 SCOP2B (2022-06-29)
EB [auth Lg]SCOP2B SuperfamilyRibosomal protein L34e-like 8106200 3002203 SCOP2B (2022-06-29)
KB [auth Lp]SCOP2B SuperfamilyZn-binding ribosomal proteins 8106178 3001320 SCOP2B (2022-06-29)
J [auth CK]SCOP2B Superfamily50S Ribosomal protein L14-like 8053081 3000433 SCOP2B (2022-06-29)
DA [auth LC]SCOP2B SuperfamilyRibosomal protein L4 8077111 3001146 SCOP2B (2022-06-29)
EA [auth LD]SCOP2B SuperfamilyTranslational machinery components 8106194 3000571 SCOP2B (2022-06-29)
JA [auth LJ]SCOP2B SuperfamilyRL5-like 8077505 3001709 SCOP2B (2022-06-29)
VA [auth LV]SCOP2B Superfamily50S Ribosomal protein L14-like 8106208 3000433 SCOP2B (2022-06-29)
IB [auth Lk]SCOP2B SuperfamilyRibosomal L38e protein-like 8106202 3002206 SCOP2B (2022-06-29)
JB [auth Ll]SCOP2B SuperfamilyRibosomal protein L39e 8106282 3001756 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
E [auth CB]PF12171Zinc-finger double-stranded RNA-binding (zf-C2H2_jaz)Zinc-finger double-stranded RNA-binding- Family
E [auth CB]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
F [auth CF]PF17777Insertion domain in 60S ribosomal protein L10P (RL10P_insert)Insertion domain in 60S ribosomal protein L10PThis domain is found in prokaryotic and archaeal ribosomal L10 protein [1].Domain
F [auth CF]PF04427Brix domain (Brix)Brix domain- Domain
F [auth CF]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
H [auth CI]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
GA [auth LF],
L [auth CM]
PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
GA [auth LF],
L [auth CM]
PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
GA [auth LF],
L [auth CM]
PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
M [auth CN]PF01912eIF-6 family (eIF-6)eIF-6 family- Family
O [auth CQ]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
BA [auth LA]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
FA [auth LE]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
FA [auth LE]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
KA [auth LK]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
KA [auth LK]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
KA [auth LK]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
MA [auth LM]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
NA [auth LN]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
QA [auth LQ]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
QA [auth LQ]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
RA [auth LR]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
RA [auth LR]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
UA [auth LU]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
WA [auth LX]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
WA [auth LX]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
XA [auth LY]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
XA [auth LY]PF00467KOW motif (KOW)KOW motif- Family
YA [auth LZ]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
NB [auth CR]PF08158SDA1, HEAT repeat (SDA1_HEAT)SDA1, HEAT repeat- Repeat
J [auth CK]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
K [auth CL]PF08701GNL3L/Grn1 putative GTPase (GN3L_Grn1)GNL3L/Grn1 putative GTPase- Family
P [auth CS]PF12333Rix1 complex component involved in 60S ribosome maturation (Ipi1_N)Rix1 complex component involved in 60S ribosome maturation- Family
Q [auth CT],
R [auth CU]
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
S [auth CV],
T [auth CW]
PF08167rRNA processing/ribosome biogenesis (RIX1)rRNA processing/ribosome biogenesis- Repeat
DA [auth LC]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
DA [auth LC]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
EA [auth LD]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
EA [auth LD]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
EA [auth LD]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
HA [auth LG]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
IA [auth LH]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
JA [auth LJ]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
JA [auth LJ]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
JA [auth LJ]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
LA [auth LL]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
OA [auth LO]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
PA [auth LP]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
PA [auth LP]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
SA [auth LS]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
VA [auth LV]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
G [auth CH]PF08155NOGCT (NUC087) domain (NOGCT)NOGCT (NUC087) domainThis C terminal domain is found in the NOG subfamily of nucleolar GTP-binding proteins [1].Domain
G [auth CH]PF06858Nucleolar GTP-binding protein 1 (NOG1) (NOG1)Nucleolar GTP-binding protein 1 (NOG1)- Family
G [auth CH]PF17835NOG1 N-terminal helical domain (NOG1_N)NOG1 N-terminal helical domainThis domain is found at the N-terminus of NOG1 GTPase proteins.Domain
G [auth CH]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
I [auth CJ]PF06732Pescadillo N-terminus (Pescadillo_N)Pescadillo N-terminus- Family
I [auth CJ]PF00533BRCA1 C Terminus (BRCT) domain (BRCT)BRCA1 C Terminus (BRCT) domain- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth C1]26S rRNA---
D [auth C4]5S rRNA---
E [auth CB]Utp30
F [auth CF]Large ribosomal subunit protein uL10
H [auth CI]Putative RNA-binding protein
GA [auth LF],
L [auth CM]
60S ribosomal protein l7-like protein
M [auth CN]Eukaryotic translation initiation factor 6
N [auth CO]DUF2423 domain-containing protein- -
O [auth CQ]Ribosome biogenesis protein RLP24-
V [auth Cd]Nucleolar GTP-binding protein 2 -
W [auth Ce]Ribosome biogenesis protein NOP53
X [auth Cf]Ribosome production factor 2 homolog
Y [auth Cg]Ribosome biogenesis regulatory protein-
Z [auth Ch]Ribosome assembly protein 4-
BA [auth LA]60S ribosomal protein L2-like protein
CA [auth LB]60S ribosomal protein L3-like protein
FA [auth LE]60S ribosomal protein L6
KA [auth LK]60S ribosomal protein L12-like protein
MA [auth LM]60S ribosomal protein L14-like protein
NA [auth LN]Ribosomal protein L15
QA [auth LQ]Ribosomal protein L18-like protein
RA [auth LR]Ribosomal protein L19
TA [auth LT]60S ribosomal protein l21-like protein
UA [auth LU]60S ribosomal protein L22-like protein
WA [auth LX]60S ribosomal protein L25-like protein
XA [auth LY]60S ribosomal protein L26-like protein
YA [auth LZ]60S ribosomal protein L27
ZA [auth La]60S ribosomal protein L28-like protein---
AB [auth Lc]60S ribosomal protein l30-like protein -
BB [auth Ld]Putative 60S ribosomal protein
CB [auth Le]60S ribosomal protein L32-like protein
DB [auth Lf]60S ribosomal protein l33-like protein
EB [auth Lg]Ribosomal protein l34-like protein
FB [auth Lh]dolichyl-diphosphooligosaccharide--protein glycotransferase
GB [auth Li]60S ribosomal protein L36
HB [auth Lj]Ribosomal protein L37
KB [auth Lp]60S ribosomal protein L43-like protein
LB [auth Lq]Putative 60S ribosomal protein
MB [auth Lr]Ribosomal protein
NB [auth CR]Protein SDA1-
J [auth CK]Ribosome biogenesis protein NSA2 homolog-
K [auth CL]Putative GTP binding protein -
P [auth CS]Pre-rRNA-processing protein IPI1-
Q [auth CT],
R [auth CU]
Pre-rRNA-processing protein IPI3-
S [auth CV],
T [auth CW]
Pre-rRNA-processing protein RIX1-
U [auth Cb]Zinc finger domain-containing protein
B [auth C2]5.8S rRNA---
AA [auth Cz]rRNA-processing protein-
DA [auth LC]60S ribosomal protein L4-like protein
EA [auth LD]60S ribosomal protein l5-like protein
C [auth C3]ITS2---
HA [auth LG]60S ribosomal protein L8
IA [auth LH]60S ribosomal protein l9-like protein---
JA [auth LJ]Putative ribosomal protein
LA [auth LL]60S ribosomal protein L13
OA [auth LO]60S ribosomal protein L16-like protein
PA [auth LP]60S ribosomal protein l17-like protein
SA [auth LS]60S ribosomal protein L20
VA [auth LV]60S ribosomal protein l23-like protein
IB [auth Lk]60S ribosomal protein L38-like protein
JB [auth Ll]Ribosomal protein eL39
G [auth CH]Nucleolar GTP-binding protein 1
I [auth CJ]Pescadillo homolog

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
E [auth CB]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
E [auth CB]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
E [auth CB]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
E [auth CB]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
F [auth CF]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
F [auth CF]IPR001790Large ribosomal subunit protein uL10Family
F [auth CF]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
F [auth CF]IPR051742Ribosomal Assembly Factor uL10Family
F [auth CF]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
F [auth CF]IPR033867Ribosome assembly factor Mrt4Family
H [auth CI]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
H [auth CI]IPR000504RNA recognition motif domainDomain
H [auth CI]IPR035979RNA-binding domain superfamilyHomologous Superfamily
GA [auth LF],
L [auth CM]
IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
GA [auth LF],
L [auth CM]
IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
GA [auth LF],
L [auth CM]
IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
GA [auth LF],
L [auth CM]
IPR039699Large ribosomal subunit protein uL30Family
GA [auth LF],
L [auth CM]
IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
GA [auth LF],
L [auth CM]
IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
M [auth CN]IPR002769Translation initiation factor IF6Family
N [auth CO]IPR019434Domain of unknown function DUF2423Domain
O [auth CQ]IPR011017TRASH domainDomain
O [auth CQ]IPR000988Large ribosomal subunit protein eL24-related, N-terminalDomain
O [auth CQ]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
V [auth Cd]IPR050755TRAFAC YlqF/YawG GTPases, Ribosome MaturationFamily
V [auth Cd]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
V [auth Cd]IPR024929Nucleolar GTP-binding protein 2, circularly permuted GTPase motifDomain
V [auth Cd]IPR006073GTP binding domainDomain
V [auth Cd]IPR012971Nucleolar GTP-binding protein 2, N-terminal domainDomain
V [auth Cd]IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
V [auth Cd]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
W [auth Ce]IPR011687Ribosome biogenesis protein Nop53/GLTSCR2Family
X [auth Cf]IPR039770Ribosome biogenesis protein Rpf2Family
X [auth Cf]IPR007109Brix domainDomain
Y [auth Cg]IPR007023Ribosomal biogenesis regulatory proteinFamily
Z [auth Ch]IPR001680WD40 repeatRepeat
Z [auth Ch]IPR019775WD40 repeat, conserved siteConserved Site
Z [auth Ch]IPR020472G-protein beta WD-40 repeatRepeat
Z [auth Ch]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
Z [auth Ch]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
BA [auth LA]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
BA [auth LA]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
BA [auth LA]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
BA [auth LA]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
BA [auth LA]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
BA [auth LA]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
BA [auth LA]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
BA [auth LA]IPR002171Large ribosomal subunit protein uL2Family
CA [auth LB]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
CA [auth LB]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
CA [auth LB]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
CA [auth LB]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
CA [auth LB]IPR000597Large ribosomal subunit protein uL3Family
FA [auth LE]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
FA [auth LE]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
FA [auth LE]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
FA [auth LE]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
FA [auth LE]IPR000915Large ribosomal subunit protein eL6Family
KA [auth LK]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
KA [auth LK]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
KA [auth LK]IPR000911Ribosomal protein uL11Family
KA [auth LK]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
KA [auth LK]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
KA [auth LK]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
MA [auth LM]IPR039660Large ribosomal subunit protein eL14Family
MA [auth LM]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
MA [auth LM]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
MA [auth LM]IPR002784Large ribosomal subunit protein eL14 domainDomain
MA [auth LM]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
NA [auth LN]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
NA [auth LN]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
NA [auth LN]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
NA [auth LN]IPR000439Large ribosomal subunit protein eL15Family
QA [auth LQ]IPR021131Large ribosomal subunit protein uL15/eL18Domain
QA [auth LQ]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
QA [auth LQ]IPR000039Large ribosomal subunit protein eL18Family
QA [auth LQ]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
RA [auth LR]IPR016024Armadillo-type foldHomologous Superfamily
RA [auth LR]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
RA [auth LR]IPR004155PBS lyase HEAT-like repeatRepeat
RA [auth LR]IPR034085TOG domainDomain
RA [auth LR]IPR019399Parkin co-regulated proteinFamily
RA [auth LR]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
RA [auth LR]IPR021133HEAT, type 2Repeat
RA [auth LR]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
RA [auth LR]IPR011989Armadillo-like helicalHomologous Superfamily
RA [auth LR]IPR022716Gcn1, N-terminalDomain
RA [auth LR]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
RA [auth LR]IPR000196Large ribosomal subunit protein eL19 domainDomain
TA [auth LT]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
TA [auth LT]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
TA [auth LT]IPR001147Large ribosomal subunit protein eL21Family
TA [auth LT]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
UA [auth LU]IPR002671Large ribosomal subunit protein eL22Family
UA [auth LU]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
WA [auth LX]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
WA [auth LX]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
WA [auth LX]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
WA [auth LX]IPR013025Large ribosomal subunit protein uL23-likeFamily
XA [auth LY]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
XA [auth LY]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
XA [auth LY]IPR005824KOWDomain
XA [auth LY]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
XA [auth LY]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
YA [auth LZ]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
YA [auth LZ]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
YA [auth LZ]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
YA [auth LZ]IPR001141Large ribosomal subunit protein eL27Family
YA [auth LZ]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
AB [auth Lc]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
AB [auth Lc]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
AB [auth Lc]IPR000231Large ribosomal subunit protein eL30Family
AB [auth Lc]IPR039109Large ribosomal subunit protein eL30-likeFamily
AB [auth Lc]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
BB [auth Ld]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
BB [auth Ld]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
BB [auth Ld]IPR000054Large ribosomal subunit protein eL31Family
CB [auth Le]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
CB [auth Le]IPR001515Large ribosomal subunit protein eL32Family
DB [auth Lf]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
DB [auth Lf]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
DB [auth Lf]IPR001780Large ribosomal subunit protein eL33Family
DB [auth Lf]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
EB [auth Lg]IPR008195Large ribosomal subunit protein eL34Family
EB [auth Lg]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
FB [auth Lh]IPR003674Oligosaccharyl transferase, STT3 subunitFamily
FB [auth Lh]IPR048307Oligosaccharyl transferase STT3, N-terminal domainDomain
FB [auth Lh]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
FB [auth Lh]IPR001854Large ribosomal subunit protein uL29Family
FB [auth Lh]IPR048999STT3/PglB/AglB, core domainDomain
GB [auth Li]IPR000509Large ribosomal subunit protein eL36Family
GB [auth Li]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
HB [auth Lj]IPR001569Large ribosomal subunit protein eL37Family
HB [auth Lj]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
HB [auth Lj]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
HB [auth Lj]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
KB [auth Lp]IPR002674Large ribosomal subunit protein eL43Family
KB [auth Lp]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
KB [auth Lp]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
KB [auth Lp]IPR050522Eukaryotic ribosomal protein eL43Family
LB [auth Lq]IPR029004Ribosomal eL28/Mak16Domain
LB [auth Lq]IPR002672Large ribosomal subunit protein eL28Family
MB [auth Lr]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
MB [auth Lr]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
MB [auth Lr]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
MB [auth Lr]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
MB [auth Lr]IPR002143Large ribosomal subunit protein uL1Family
MB [auth Lr]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
NB [auth CR]IPR048292SDA1, C-terminal domainDomain
NB [auth CR]IPR016024Armadillo-type foldHomologous Superfamily
NB [auth CR]IPR007949SDA1, middle domainDomain
NB [auth CR]IPR027312Sda1Family
NB [auth CR]IPR012977SDA1, N-terminalDomain
J [auth CK]IPR039411Ribosomal biogenesis NSA2 familyFamily
J [auth CK]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
K [auth CL]IPR050755TRAFAC YlqF/YawG GTPases, Ribosome MaturationFamily
K [auth CL]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
K [auth CL]IPR006073GTP binding domainDomain
K [auth CL]IPR014813Guanine nucleotide-binding protein-like 3, N-terminal domainDomain
K [auth CL]IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
K [auth CL]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
P [auth CS]IPR024679Pre-rRNA-processing protein Ipi1, N-terminalDomain
P [auth CS]IPR016024Armadillo-type foldHomologous Superfamily
Q [auth CT],
R [auth CU]
IPR001680WD40 repeatRepeat
Q [auth CT],
R [auth CU]
IPR045227WD repeat-containing protein WDR18/Ipi3/RID3Family
Q [auth CT],
R [auth CU]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
Q [auth CT],
R [auth CU]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
S [auth CV],
T [auth CW]
IPR016024Armadillo-type foldHomologous Superfamily
S [auth CV],
T [auth CW]
IPR012583Pre-rRNA-processing protein RIX1, N-terminalDomain
U [auth Cb]IPR003604Matrin/U1-C-like, C2H2-type zinc fingerDomain
U [auth Cb]IPR051879C2H2-type Zinc Finger Maturation ProteinFamily
U [auth Cb]IPR013087Zinc finger C2H2-typeDomain
U [auth Cb]IPR036236Zinc finger C2H2 superfamilyHomologous Superfamily
U [auth Cb]IPR022755Zinc finger, double-stranded RNA bindingDomain
AA [auth Cz]IPR005579Cgr1-likeFamily
DA [auth LC]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
DA [auth LC]IPR002136Large ribosomal subunit protein uL4Family
DA [auth LC]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
DA [auth LC]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
DA [auth LC]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
EA [auth LD]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
EA [auth LD]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
HA [auth LG]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
HA [auth LG]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
HA [auth LG]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
HA [auth LG]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
HA [auth LG]IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
HA [auth LG]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
JA [auth LJ]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
JA [auth LJ]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
JA [auth LJ]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
JA [auth LJ]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
JA [auth LJ]IPR002132Large ribosomal subunit protein uL5Family
LA [auth LL]IPR001380Large ribosomal subunit protein eL13Family
LA [auth LL]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
OA [auth LO]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
OA [auth LO]IPR005822Large ribosomal subunit protein uL13Family
OA [auth LO]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
OA [auth LO]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
PA [auth LP]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
PA [auth LP]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
PA [auth LP]IPR001063Large ribosomal subunit protein uL22Family
PA [auth LP]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
SA [auth LS]IPR028877Large ribosomal subunit protein eL20Family
SA [auth LS]IPR023573Large ribosomal subunit protein eL20 domainDomain
SA [auth LS]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
VA [auth LV]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
VA [auth LV]IPR000218Large ribosomal subunit protein uL14Family
VA [auth LV]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
IB [auth Lk]IPR002675Large ribosomal subunit protein eL38Family
IB [auth Lk]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
JB [auth Ll]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
JB [auth Ll]IPR000077Large ribosomal subunit protein eL39Family
G [auth CH]IPR024926Nucleolar GTP-binding protein 1Family
G [auth CH]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
G [auth CH]IPR012973NOG, C-terminalDomain
G [auth CH]IPR010674Nucleolar GTP-binding protein 1, Rossman-fold domainDomain
G [auth CH]IPR041623NOG1, N-terminal helical domainDomain
G [auth CH]IPR006073GTP binding domainDomain
G [auth CH]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
I [auth CJ]IPR001357BRCT domainDomain
I [auth CJ]IPR010613PescadilloFamily
I [auth CJ]IPR036420BRCT domain superfamilyHomologous Superfamily