Symmetric structure of Satellite Tobacco Necrosis Virus-Like Particle with PS1-5 gRNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| A | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| AA [auth a] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| BA [auth b] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| BB [auth 1] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| CA [auth c] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| DA [auth d] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| DB [auth 3] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| FA [auth f] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| GA [auth g] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| IA [auth i] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| KA [auth k] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| LA [auth l] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| O | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| OA [auth o] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| Q | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| QA [auth q] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| SA [auth s] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| V | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| VA [auth v] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| W | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| WA [auth w] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| ZA [auth z] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| Z | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| YA [auth y] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| Y | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| XA [auth x] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| X | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| UA [auth u] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| U | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| TA [auth t] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| T | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| S | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| RA [auth r] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| R | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| PA [auth p] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| P | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| NA [auth n] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| N | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| MA [auth m] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| JA [auth j] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| HB [auth 7] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| HA [auth h] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| GB [auth 6] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| FB [auth 5] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| EB [auth 4] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| EA [auth e] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| CB [auth 2] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
| AB [auth 0] | SCOP2B Superfamily | Satellite viruses | 8038652 | 3000942 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | PAS_3 | e8qkmA01 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: PAS_3 | ECOD (v294.2) |
| AA [auth a] | DNA_topoisoIV | e8qkma1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| BA [auth b] | DNA_topoisoIV | e8qkmb1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| BB [auth 1] | DNA_topoisoIV | e8qkm11 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| CA [auth c] | DNA_topoisoIV | e8qkmc1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| DA [auth d] | DNA_topoisoIV | e8qkmd1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| DB [auth 3] | DNA_topoisoIV | e8qkm31 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| E | DNA_topoisoIV | e8qkmE1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| FA [auth f] | DNA_topoisoIV | e8qkmf1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| GA [auth g] | DNA_topoisoIV | e8qkmg1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| IA [auth i] | DNA_topoisoIV | e8qkmi1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| J | DNA_topoisoIV | e8qkmJ1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| K | DNA_topoisoIV | e8qkmK1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| KA [auth k] | DNA_topoisoIV | e8qkmk1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| LA [auth l] | DNA_topoisoIV | e8qkml1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| O | DNA_topoisoIV | e8qkmO1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| OA [auth o] | DNA_topoisoIV | e8qkmo1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| Q | DNA_topoisoIV | e8qkmQ1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| QA [auth q] | DNA_topoisoIV | e8qkmq1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| SA [auth s] | DNA_topoisoIV | e8qkms1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| V | DNA_topoisoIV | e8qkmV1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| VA [auth v] | DNA_topoisoIV | e8qkmv1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| W | DNA_topoisoIV | e8qkmW1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| WA [auth w] | DNA_topoisoIV | e8qkmw1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| ZA [auth z] | DNA_topoisoIV | e8qkmz1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| Z | DNA_topoisoIV | e8qkmZ1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| YA [auth y] | DNA_topoisoIV | e8qkmy1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| Y | DNA_topoisoIV | e8qkmY1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| XA [auth x] | DNA_topoisoIV | e8qkmx1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| X | DNA_topoisoIV | e8qkmX1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| UA [auth u] | DNA_topoisoIV | e8qkmu1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| U | DNA_topoisoIV | e8qkmU1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| TA [auth t] | DNA_topoisoIV | e8qkmt1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| T | DNA_topoisoIV | e8qkmT1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| S | DNA_topoisoIV | e8qkmS1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| RA [auth r] | DNA_topoisoIV | e8qkmr1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| R | DNA_topoisoIV | e8qkmR1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| PA [auth p] | DNA_topoisoIV | e8qkmp1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| P | DNA_topoisoIV | e8qkmP1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| NA [auth n] | DNA_topoisoIV | e8qkmn1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| N | DNA_topoisoIV | e8qkmN1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| MA [auth m] | DNA_topoisoIV | e8qkmm1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| M | DNA_topoisoIV | e8qkmM1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| L | DNA_topoisoIV | e8qkmL1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| JA [auth j] | DNA_topoisoIV | e8qkmj1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| I | DNA_topoisoIV | e8qkmI1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| HB [auth 7] | DNA_topoisoIV | e8qkm71 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| HA [auth h] | DNA_topoisoIV | e8qkmh1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| H | DNA_topoisoIV | e8qkmH1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| GB [auth 6] | DNA_topoisoIV | e8qkm61 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| G | DNA_topoisoIV | e8qkmG1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| FB [auth 5] | DNA_topoisoIV | e8qkm51 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| F | DNA_topoisoIV | e8qkmF1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| EB [auth 4] | DNA_topoisoIV | e8qkm41 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| EA [auth e] | DNA_topoisoIV | e8qkme1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| D | DNA_topoisoIV | e8qkmD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| CB [auth 2] | DNA_topoisoIV | e8qkm21 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| C | DNA_topoisoIV | e8qkmC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| B | DNA_topoisoIV | e8qkmB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| AB [auth 0] | DNA_topoisoIV | e8qkm01 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF03898 | Satellite tobacco necrosis virus coat protein (TNV_CP) | Satellite tobacco necrosis virus coat protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Capsid protein | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR005597 | Satellite tobacco necrosis virus coat protein-like | Family | |
| IPR037164 | Satellite virus coat domain superfamily | Homologous Superfamily | |
| IPR010392 | Satellite virus coat | Family | |
| IPR029053 | Viral coat protein subunit | Homologous Superfamily |














