8QKM | pdb_00008qkm

Symmetric structure of Satellite Tobacco Necrosis Virus-Like Particle with PS1-5 gRNA


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
AA [auth a]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
BA [auth b]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
BB [auth 1]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
CA [auth c]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
DA [auth d]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
DB [auth 3]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
ESCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
FA [auth f]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
GA [auth g]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
IA [auth i]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
JSCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
KSCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
KA [auth k]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
LA [auth l]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
OSCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
OA [auth o]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
QSCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
QA [auth q]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
SA [auth s]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
VSCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
VA [auth v]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
WSCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
WA [auth w]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
ZA [auth z]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
YA [auth y]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
YSCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
XA [auth x]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
XSCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
UA [auth u]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
USCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
TA [auth t]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
TSCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
SSCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
RA [auth r]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
RSCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
PA [auth p]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
PSCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
NA [auth n]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
NSCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
MA [auth m]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
MSCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
LSCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
JA [auth j]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
ISCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
HB [auth 7]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
HA [auth h]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
HSCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
GB [auth 6]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
GSCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
FB [auth 5]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
FSCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
EB [auth 4]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
EA [auth e]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
DSCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
CB [auth 2]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
CSCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
BSCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)
AB [auth 0]SCOP2B SuperfamilySatellite viruses 8038652 3000942 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APAS_3e8qkmA01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: PAS_3ECOD (v294.2)
AA [auth a]DNA_topoisoIVe8qkma1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
BA [auth b]DNA_topoisoIVe8qkmb1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
BB [auth 1]DNA_topoisoIVe8qkm11 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
CA [auth c]DNA_topoisoIVe8qkmc1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
DA [auth d]DNA_topoisoIVe8qkmd1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
DB [auth 3]DNA_topoisoIVe8qkm31 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
EDNA_topoisoIVe8qkmE1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
FA [auth f]DNA_topoisoIVe8qkmf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
GA [auth g]DNA_topoisoIVe8qkmg1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
IA [auth i]DNA_topoisoIVe8qkmi1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
JDNA_topoisoIVe8qkmJ1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
KDNA_topoisoIVe8qkmK1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
KA [auth k]DNA_topoisoIVe8qkmk1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
LA [auth l]DNA_topoisoIVe8qkml1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
ODNA_topoisoIVe8qkmO1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
OA [auth o]DNA_topoisoIVe8qkmo1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
QDNA_topoisoIVe8qkmQ1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
QA [auth q]DNA_topoisoIVe8qkmq1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
SA [auth s]DNA_topoisoIVe8qkms1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
VDNA_topoisoIVe8qkmV1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
VA [auth v]DNA_topoisoIVe8qkmv1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
WDNA_topoisoIVe8qkmW1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
WA [auth w]DNA_topoisoIVe8qkmw1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
ZA [auth z]DNA_topoisoIVe8qkmz1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
ZDNA_topoisoIVe8qkmZ1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
YA [auth y]DNA_topoisoIVe8qkmy1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
YDNA_topoisoIVe8qkmY1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
XA [auth x]DNA_topoisoIVe8qkmx1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
XDNA_topoisoIVe8qkmX1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
UA [auth u]DNA_topoisoIVe8qkmu1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
UDNA_topoisoIVe8qkmU1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
TA [auth t]DNA_topoisoIVe8qkmt1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
TDNA_topoisoIVe8qkmT1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
SDNA_topoisoIVe8qkmS1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
RA [auth r]DNA_topoisoIVe8qkmr1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
RDNA_topoisoIVe8qkmR1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
PA [auth p]DNA_topoisoIVe8qkmp1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
PDNA_topoisoIVe8qkmP1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
NA [auth n]DNA_topoisoIVe8qkmn1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
NDNA_topoisoIVe8qkmN1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
MA [auth m]DNA_topoisoIVe8qkmm1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
MDNA_topoisoIVe8qkmM1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
LDNA_topoisoIVe8qkmL1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
JA [auth j]DNA_topoisoIVe8qkmj1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
IDNA_topoisoIVe8qkmI1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
HB [auth 7]DNA_topoisoIVe8qkm71 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
HA [auth h]DNA_topoisoIVe8qkmh1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
HDNA_topoisoIVe8qkmH1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
GB [auth 6]DNA_topoisoIVe8qkm61 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
GDNA_topoisoIVe8qkmG1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
FB [auth 5]DNA_topoisoIVe8qkm51 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
FDNA_topoisoIVe8qkmF1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
EB [auth 4]DNA_topoisoIVe8qkm41 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
EA [auth e]DNA_topoisoIVe8qkme1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
DDNA_topoisoIVe8qkmD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
CB [auth 2]DNA_topoisoIVe8qkm21 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
CDNA_topoisoIVe8qkmC1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
BDNA_topoisoIVe8qkmB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
AB [auth 0]DNA_topoisoIVe8qkm01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR005597Satellite tobacco necrosis virus coat protein-likeFamily
IPR037164Satellite virus coat domain superfamilyHomologous Superfamily
IPR010392Satellite virus coatFamily
IPR029053Viral coat protein subunitHomologous Superfamily