Annotations: 8QL1

Crystal structure of the human MDN1-MIDAS/NLE1-UBL complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	IF4E	e8ql1A01	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: IF4E	ECOD (v295)
C	DNA_topoisoIV	e8ql1C1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
E	DNA_topoisoIV	e8ql1E1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
G	DNA_topoisoIV	e8ql1G1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
B	IF4E	e8ql1B01	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: IF4E	ECOD (v295)
D	DNA_topoisoIV	e8ql1D1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
H	DNA_topoisoIV	e8ql1H1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
F	DNA_topoisoIV	e8ql1F1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D, F, H	PF08154	NLE (NUC135) domain (NLE)	NLE (NUC135) domain	This domain is located N terminal to WD40 repeats. It is found in the microtubule-associated protein Swiss:Q12024 [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C, E, G	NDE1	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity	ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component biogenesis cellular component organization ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly ribosomal large subunit assembly protein-containing complex assembly ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component biogenesis cellular component organization ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly ribosomal large subunit assembly protein-containing complex assembly cellular process cellular component organization or biogenesis ribosome assembly RNA metabolic process rRNA processing cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process RNA processing rRNA metabolic process endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) maturation of 5.8S rRNA primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biosynthetic process metabolic process macromolecule metabolic process maturation of LSU-rRNA	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane cytoplasm nucleoplasm
B, D, F, H	Notchless protein homolog 1	-	cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation regulation of signal transduction cell communication Notch signaling pathway regulation of response to stimulus regulation of Notch signaling pathway regulation of cell communication cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation regulation of signal transduction cell communication Notch signaling pathway regulation of response to stimulus regulation of Notch signaling pathway regulation of cell communication cellular process signal transduction	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C, E, G	IPR048617	Midasin, lid domain 4	Domain
A, C, E, G	IPR011704	ATPase, dynein-related, AAA domain	Domain
A, C, E, G	IPR036465	von Willebrand factor A-like domain superfamily	Homologous Superfamily
A, C, E, G	IPR040848	Midasin, AAA lid domain 7	Domain
A, C, E, G	IPR012099	Midasin	Family
A, C, E, G	IPR003593	AAA+ ATPase domain	Domain
A, C, E, G	IPR041190	Midasin AAA lid domain 5	Domain
A, C, E, G	IPR002035	von Willebrand factor, type A	Domain
A, C, E, G	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
B, D, F, H	IPR020472	PAC1/LIS1-like, WD-40 repeat	Repeat
B, D, F, H	IPR001632	G-protein beta subunit-like, WD40 repeats	Domain
B, D, F, H	IPR001680	WD40 repeat	Repeat
B, D, F, H	IPR019775	WD40 repeat, conserved site	Conserved Site
B, D, F, H	IPR012972	NLE	Domain
B, D, F, H	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
B, D, F, H	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, C, E, G	: Q9NU22	heart disease Pick disease osteosarcoma psoriasis ovarian cancer
B, D, F, H	: Q9NVX2	large cell medulloblastoma Malignant neoplasm of breast pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia malignant colon neoplasm pancreatic intraductal papillary-mucinous carcinoma malignant mesothelioma pancreatic intraductal papillary-mucinous neoplasm

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.