Annotations: 8RT5

I-layer structure (TrwF/VirB9CTD, TrwE/VirB10CTD) of the outer membrane core complex from the fully-assembled R388 type IV secretion system determined by cryo-EM.

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	CoV_Methyltr_2	e8rt5B1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
BA [auth l]	CoV_Methyltr_2	e8rt5l1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
D [auth E]	CoV_Methyltr_2	e8rt5E1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
F [auth H]	CoV_Methyltr_2	e8rt5H1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
FA [auth z]	CoV_Methyltr_2	e8rt5z1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
H [auth K]	CoV_Methyltr_2	e8rt5K1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
J [auth N]	CoV_Methyltr_2	e8rt5N1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
L [auth Q]	CoV_Methyltr_2	e8rt5Q1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
N [auth T]	CoV_Methyltr_2	e8rt5T1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
P [auth v]	CoV_Methyltr_2	e8rt5v1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
T [auth Z]	CoV_Methyltr_2	e8rt5Z1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
V [auth c]	CoV_Methyltr_2	e8rt5c1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
X [auth f]	CoV_Methyltr_2	e8rt5f1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
Z [auth i]	CoV_Methyltr_2	e8rt5i1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
R [auth W]	CoV_Methyltr_2	e8rt5W1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
DA [auth o]	CoV_Methyltr_2	e8rt5o1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
A	CoV_Methyltr_2	e8rt5A1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
AA [auth k]	CoV_Methyltr_2	e8rt5k1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
C [auth D]	CoV_Methyltr_2	e8rt5D1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
CA [auth n]	CoV_Methyltr_2	e8rt5n1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
EA [auth y]	CoV_Methyltr_2	e8rt5y1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
I [auth M]	CoV_Methyltr_2	e8rt5M1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
M [auth S]	CoV_Methyltr_2	e8rt5S1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
O [auth u]	CoV_Methyltr_2	e8rt5u1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
Q [auth V]	CoV_Methyltr_2	e8rt5V1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
S [auth Y]	CoV_Methyltr_2	e8rt5Y1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
W [auth e]	CoV_Methyltr_2	e8rt5e1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
Y [auth h]	CoV_Methyltr_2	e8rt5h1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
U [auth b]	CoV_Methyltr_2	e8rt5b1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
K [auth P]	CoV_Methyltr_2	e8rt5P1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
G [auth J]	CoV_Methyltr_2	e8rt5J1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
E [auth G]	CoV_Methyltr_2	e8rt5G1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, BA [auth l], D [auth E], DA [auth o], F [auth H], B, BA [auth l], D [auth E], DA [auth o], F [auth H], FA [auth z], H [auth K], J [auth N], L [auth Q], N [auth T], P [auth v], R [auth W], T [auth Z], V [auth c], X [auth f], Z [auth i]	TrwF protein	-	-	cell outer membrane cellular anatomical structure external encapsulating structure extracellular region membrane cell envelope outer membrane
A, AA [auth k], C [auth D], CA [auth n], E [auth G], A, AA [auth k], C [auth D], CA [auth n], E [auth G], EA [auth y], G [auth J], I [auth M], K [auth P], M [auth S], O [auth u], Q [auth V], S [auth Y], U [auth b], W [auth e], Y [auth h]	TrwE protein	-	-	cell periphery cellular anatomical structure plasma membrane membrane cell outer membrane external encapsulating structure extracellular region cell envelope outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, BA [auth l], D [auth E], DA [auth o], F [auth H], B, BA [auth l], D [auth E], DA [auth o], F [auth H], FA [auth z], H [auth K], J [auth N], L [auth Q], N [auth T], P [auth v], R [auth W], T [auth Z], V [auth c], X [auth f], Z [auth i]	IPR033645	VirB9/CagX/TrbG, C-terminal	Domain
B, BA [auth l], D [auth E], DA [auth o], F [auth H], B, BA [auth l], D [auth E], DA [auth o], F [auth H], FA [auth z], H [auth K], J [auth N], L [auth Q], N [auth T], P [auth v], R [auth W], T [auth Z], V [auth c], X [auth f], Z [auth i]	IPR038161	VirB9/CagX/TrbG, C-terminal domain superfamily	Homologous Superfamily
B, BA [auth l], D [auth E], DA [auth o], F [auth H], B, BA [auth l], D [auth E], DA [auth o], F [auth H], FA [auth z], H [auth K], J [auth N], L [auth Q], N [auth T], P [auth v], R [auth W], T [auth Z], V [auth c], X [auth f], Z [auth i]	IPR010258	Conjugal transfer TrbG/VirB9/CagX	Family
A, AA [auth k], C [auth D], CA [auth n], E [auth G], A, AA [auth k], C [auth D], CA [auth n], E [auth G], EA [auth y], G [auth J], I [auth M], K [auth P], M [auth S], O [auth u], Q [auth V], S [auth Y], U [auth b], W [auth e], Y [auth h]	IPR047695	Type IV secretion system, VirB10/PtlG	Family
A, AA [auth k], C [auth D], CA [auth n], E [auth G], A, AA [auth k], C [auth D], CA [auth n], E [auth G], EA [auth y], G [auth J], I [auth M], K [auth P], M [auth S], O [auth u], Q [auth V], S [auth Y], U [auth b], W [auth e], Y [auth h]	IPR042217	Type IV secretion system, VirB10/TrbI	Homologous Superfamily
A, AA [auth k], C [auth D], CA [auth n], E [auth G], A, AA [auth k], C [auth D], CA [auth n], E [auth G], EA [auth y], G [auth J], I [auth M], K [auth P], M [auth S], O [auth u], Q [auth V], S [auth Y], U [auth b], W [auth e], Y [auth h]	IPR005498	Type IV secretion system, VirB10/TraB/TrbI	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8RT5 | pdb_00008rt5

I-layer structure (TrwF/VirB9CTD, TrwE/VirB10CTD) of the outer membrane core complex from the fully-assembled R388 type IV secretion system determined by cryo-EM.

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage