Arches-protomer complex full-length structure (TrwJ/VirB8) from the fully-assembled R388 type IV secretion system determined by cryo-EM.
External Resource: Annotation
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| F [auth I] | WD40 | e8rtaI1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| E [auth H] | WD40 | e8rtaH1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| D [auth G] | WD40 | e8rtaG1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| C [auth F] | WD40 | e8rtaF1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| B [auth E] | WD40 | e8rtaE1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| A [auth D] | WD40 | e8rtaD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| E [auth H], F [auth I] | IPR047695 | Type IV secretion system, VirB10/PtlG | Family |
| E [auth H], F [auth I] | IPR042217 | Type IV secretion system, VirB10/TrbI | Homologous Superfamily |
| E [auth H], F [auth I] | IPR005498 | Type IV secretion system, VirB10/TraB/TrbI | Family |
| A [auth D], B [auth E], C [auth F], D [auth G] | IPR032710 | NTF2-like domain superfamily | Homologous Superfamily |
| A [auth D], B [auth E], C [auth F], D [auth G] | IPR007430 | Bacterial virulence protein VirB8-like | Domain |
| A [auth D], B [auth E], C [auth F], D [auth G] | IPR026264 | VirB8/PtlE | Unknown |














