8RXC | pdb_00008rxc

RadA helicase from Streptococcus pneumoniae coordinating dsDNA

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth E]	WD40	e8rxcE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
E [auth F]	WD40	e8rxcF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
D [auth A]	WD40	e8rxcA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
C [auth B]	WD40	e8rxcB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
B [auth C]	WD40	e8rxcC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
A [auth D]	AAA_25	e8rxcD01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: AAA_25	ECOD (v294.2)
A [auth D]	Mg_chelatase	e8rxcD02	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Mg_chelatase	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
H	Poly-dA (30 bp) Poly-dC (60 bp) Poly-dA (30 bp)	-	-	-
G	Poly-dT 30 bp	-	-	-
A [auth D], B [auth C], C [auth B], D [auth A], E [auth F], A [auth D], B [auth C], C [auth B], D [auth A], E [auth F], F [auth E]	DNA repair protein RadA	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding hydrolase activity catalytic activity cation binding transition metal ion binding zinc ion binding metal ion binding DNA binding damaged DNA binding nucleic acid binding ATP-dependent activity, acting on DNA DNA damage sensor activity molecular sensor activity catalytic activity, acting on DNA ATP-dependent DNA damage sensor activity catalytic activity, acting on a nucleic acid molecular function regulator activity ATP-dependent activity	cellular response to stimulus response to stimulus DNA recombination primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress recombinational repair metabolic process cellular process macromolecule metabolic process cellular response to stimulus response to stimulus DNA recombination primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress recombinational repair metabolic process cellular process macromolecule metabolic process DNA repair	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth D], B [auth C], C [auth B], D [auth A], E [auth F], A [auth D], B [auth C], C [auth B], D [auth A], E [auth F], F [auth E]	IPR004504	DNA repair protein RadA	Family
A [auth D], B [auth C], C [auth B], D [auth A], E [auth F], A [auth D], B [auth C], C [auth B], D [auth A], E [auth F], F [auth E]	IPR020588	DNA recombination and repair protein RecA-like, ATP-binding domain	Domain
A [auth D], B [auth C], C [auth B], D [auth A], E [auth F], A [auth D], B [auth C], C [auth B], D [auth A], E [auth F], F [auth E]	IPR003593	AAA+ ATPase domain	Domain
A [auth D], B [auth C], C [auth B], D [auth A], E [auth F], A [auth D], B [auth C], C [auth B], D [auth A], E [auth F], F [auth E]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
A [auth D], B [auth C], C [auth B], D [auth A], E [auth F], A [auth D], B [auth C], C [auth B], D [auth A], E [auth F], F [auth E]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A [auth D], B [auth C], C [auth B], D [auth A], E [auth F], A [auth D], B [auth C], C [auth B], D [auth A], E [auth F], F [auth E]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
A [auth D], B [auth C], C [auth B], D [auth A], E [auth F], A [auth D], B [auth C], C [auth B], D [auth A], E [auth F], F [auth E]	IPR041166	LapB, rubredoxin metal binding domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.