Annotations: 8S1R

Crystal structure of SHANK1 PDZ in complex with a SLiM internal ligand

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth DDD]	WD40	e8s1rDDD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
C [auth CCC]	WD40	e8s1rCCC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
B [auth BBB]	WD40	e8s1rBBB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
A [auth AAA]	WD40	e8s1rAAA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD]	PF17820	PDZ domain (PDZ_6)	PDZ domain	This entry represents the PDZ domain from a wide variety of proteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth EaE], F [auth FaF], G [auth GaG], H [auth HaH]	F-box only protein 41	-	developmental process multicellular organismal process neuron migration cellular developmental process nervous system development generation of neurons neurogenesis multicellular organism development cell differentiation anatomical structure development cellular process cell migration cell motility system development developmental process multicellular organismal process neuron migration cellular developmental process nervous system development generation of neurons neurogenesis multicellular organism development cell differentiation anatomical structure development cellular process cell migration cell motility system development biosynthetic process metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process trans-synaptic signaling synaptic signaling regulation of biological process signaling anterograde trans-synaptic signaling biological regulation cell-cell signaling chemical synaptic transmission cell communication head development forebrain development animal organ development brain development dentate gyrus development pallium development central nervous system development telencephalon development hippocampus development limbic system development cell development developmental maturation neuron differentiation anatomical structure maturation neuron development neuron maturation cell maturation	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol synapse cell junction
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD]	SH3 and multiple ankyrin repeat domains protein 1	structural constituent of postsynapse structural molecule activity structural constituent of postsynaptic density structural constituent of synapse structural constituent of postsynaptic specialization somatostatin receptor binding protein binding binding signaling receptor binding G protein-coupled receptor binding neuropeptide receptor binding SH3 domain binding protein domain specific binding signaling receptor complex adaptor activity structural constituent of postsynapse structural molecule activity structural constituent of postsynaptic density structural constituent of synapse structural constituent of postsynaptic specialization somatostatin receptor binding protein binding binding signaling receptor binding G protein-coupled receptor binding neuropeptide receptor binding SH3 domain binding protein domain specific binding signaling receptor complex adaptor activity protein-macromolecule adaptor activity synaptic receptor adaptor activity molecular adaptor activity signaling adaptor activity protein-containing complex binding identical protein binding ankyrin repeat binding scaffold protein binding ionotropic glutamate receptor binding glutamate receptor binding	cellular response to stimulus positive regulation of cell communication multicellular organismal process regulation of postsynaptic membrane potential system process regulation of cellular process positive regulation of signal transduction response to stimulus signaling modulation of chemical synaptic transmission regulation of system process positive regulation of excitatory postsynaptic potential positive regulation of biological process regulation of signal transduction chemical synaptic transmission, postsynaptic cellular response to stimulus positive regulation of cell communication multicellular organismal process regulation of postsynaptic membrane potential system process regulation of cellular process positive regulation of signal transduction response to stimulus signaling modulation of chemical synaptic transmission regulation of system process positive regulation of excitatory postsynaptic potential positive regulation of biological process regulation of signal transduction chemical synaptic transmission, postsynaptic cell communication positive regulation of response to stimulus synaptic signaling modulation of excitatory postsynaptic potential regulation of multicellular organismal process signal transduction regulation of biological quality positive regulation of cellular process trans-synaptic signaling regulation of biological process regulation of signaling cell surface receptor signaling pathway nervous system process biological regulation cell-cell signaling chemical synaptic transmission regulation of nervous system process regulation of trans-synaptic signaling regulation of response to stimulus anterograde trans-synaptic signaling regulation of cell communication cellular process excitatory postsynaptic potential regulation of membrane potential positive regulation of signaling regulation of cytoskeleton organization regulation of cellular component organization regulation of actin filament-based process negative regulation of biological process regulation of actin filament bundle assembly cellular component organization cellular component biogenesis cellular component assembly actin filament bundle organization negative regulation of cellular process actin filament-based process negative regulation of supramolecular fiber organization cellular component organization or biogenesis regulation of actin filament organization negative regulation of cellular component organization actin cytoskeleton organization negative regulation of cytoskeleton organization actin filament organization negative regulation of actin filament bundle assembly regulation of cellular component biogenesis regulation of organelle organization organelle organization negative regulation of organelle organization regulation of actin cytoskeleton organization actin filament bundle assembly regulation of supramolecular fiber organization supramolecular fiber organization cytoskeleton organization sensory perception sensory processing determination of affect cognition behavior learning learning or memory nonassociative learning habituation regulation of developmental process cellular developmental process cell projection organization positive regulation of dendritic spine development cell development regulation of dendritic spine development neuron projection development positive regulation of developmental process neurogenesis multicellular organism development neuron differentiation dendrite development cell differentiation anatomical structure development system development developmental process dendritic spine development plasma membrane bounded cell projection organization nervous system development generation of neurons neuron development plasma membrane bounded cell projection morphogenesis cell morphogenesis cell projection morphogenesis neuron projection morphogenesis dendritic spine morphogenesis synapse organization dendritic spine organization postsynapse organization dendrite morphogenesis cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis cell junction organization neuron projection organization developmental maturation synapse maturation olfactory behavior response to chemical chemosensory behavior protein-containing complex organization protein-containing complex assembly reflex response to external stimulus righting reflex adult behavior localization protein localization to synapse macromolecule localization intracellular protein localization protein localization to cell junction neuromuscular process neuromuscular process controlling balance long-term memory memory biological process involved in intraspecies interaction between organisms social behavior ligand-gated ion channel signaling pathway ionotropic glutamate receptor signaling pathway glutamate receptor signaling pathway AMPA selective glutamate receptor signaling pathway associative learning vocalization behavior	cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane intracellular anatomical structure cytoplasm cytosol somatodendritic compartment cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane intracellular anatomical structure cytoplasm cytosol somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection glutamatergic synapse neuron spine dendritic spine excitatory synapse postsynaptic density neuron to neuron synapse postsynaptic specialization organelle asymmetric synapse Schaffer collateral - CA1 synapse

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth EaE], F [auth FaF], G [auth GaG], H [auth HaH]	IPR036047	F-box-like domain superfamily	Homologous Superfamily
E [auth EaE], F [auth FaF], G [auth GaG], H [auth HaH]	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
E [auth EaE], F [auth FaF], G [auth GaG], H [auth HaH]	IPR057038	FBX41/ZN365, C2H2-type zinc finger	Domain
E [auth EaE], F [auth FaF], G [auth GaG], H [auth HaH]	IPR001810	F-box domain	Domain
E [auth EaE], F [auth FaF], G [auth GaG], H [auth HaH]	IPR052283	Genomic Stability and Neuronal Morphogenesis Regulator	Family
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD]	IPR051569	SHANK	Unknown
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD]	IPR036028	SH3-like domain superfamily	Homologous Superfamily
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD]	IPR002110	Ankyrin repeat	Repeat
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD]	IPR001452	SH3 domain	Domain
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD]	IPR001660	Sterile alpha motif domain	Domain
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD]	IPR036770	Ankyrin repeat-containing domain superfamily	Homologous Superfamily
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD]	IPR013761	Sterile alpha motif/pointed domain superfamily	Homologous Superfamily
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD]	IPR041489	PDZ domain 6	Domain
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD]	IPR036034	PDZ superfamily	Homologous Superfamily
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD]	IPR001478	PDZ domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
E [auth EaE], F [auth FaF], G [auth GaG], H [auth HaH]	: Q8TF61	astrocytic tumor large cell medulloblastoma malignant glioma oligodendroglioma primitive neuroectodermal tumor tuberculosis atypical teratoid rhabdoid tumor lung adenocarcinoma malignant mesothelioma osteosarcoma psoriasis glioblastoma malignant ependymoma medulloblastoma pilocytic astrocytoma astrocytic tumor large cell medulloblastoma malignant glioma oligodendroglioma primitive neuroectodermal tumor tuberculosis atypical teratoid rhabdoid tumor lung adenocarcinoma malignant mesothelioma osteosarcoma psoriasis glioblastoma malignant ependymoma medulloblastoma pilocytic astrocytoma subependymal giant cell astrocytoma
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD]	: Q9Y566	renal cell carcinoma papillary renal cell carcinoma collecting duct carcinoma developmental coordination disorder chromophobe renal cell carcinoma sarcomatoid renal cell carcinoma autism primitive neuroectodermal tumor renal carcinoma schizophrenia anxiety disorder Anxiety States, Neurotic large cell medulloblastoma Phelan-McDermid syndrome psoriasis renal cell carcinoma papillary renal cell carcinoma collecting duct carcinoma developmental coordination disorder chromophobe renal cell carcinoma sarcomatoid renal cell carcinoma autism primitive neuroectodermal tumor renal carcinoma schizophrenia anxiety disorder Anxiety States, Neurotic large cell medulloblastoma Phelan-McDermid syndrome psoriasis atypical teratoid rhabdoid tumor colorectal cancer glioblastoma malignant ependymoma pilocytic astrocytoma clear cell renal carcinoma intellectual disability malignant glioma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.