Annotations: 8TH6

Crystal Structure of the G3BP1 NTF2-like domain bound to USP10 peptide

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	WD40	e8th6D1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
C	WD40	e8th6C1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
B	WD40	e8th6B1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
A	WD40	e8th6A1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF02136	Nuclear transport factor 2 (NTF2) domain (NTF2)	Nuclear transport factor 2 (NTF2) domain	This family includes the NTF2-like Delta-5-3-ketosteroid isomerase proteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E, F, G, H	Ubiquitin carboxyl-terminal hydrolase 10	p53 binding protein binding binding molecular function inhibitor activity molecular function regulator activity cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein cysteine-type endopeptidase activity hydrolase activity catalytic activity endopeptidase activity RNA binding nucleic acid binding p53 binding protein binding binding molecular function inhibitor activity molecular function regulator activity cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein cysteine-type endopeptidase activity hydrolase activity catalytic activity endopeptidase activity RNA binding nucleic acid binding ubiquitin-like protein peptidase activity cysteine-type deubiquitinase activity deubiquitinase activity transmembrane transporter binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process regulation of cellular component organization regulation of cellular process stress granule assembly negative regulation of biological process membraneless organelle assembly negative regulation of organelle assembly cellular component biogenesis cellular component organization cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process regulation of cellular component organization regulation of cellular process stress granule assembly negative regulation of biological process membraneless organelle assembly negative regulation of organelle assembly cellular component biogenesis cellular component organization cellular component assembly negative regulation of cellular process cellular component organization or biogenesis regulation of biological process organelle assembly negative regulation of cellular component organization biological regulation regulation of cellular component biogenesis regulation of organelle organization organelle organization negative regulation of organelle organization negative regulation of stress granule assembly regulation of organelle assembly regulation of stress granule assembly signaling negative regulation of signaling negative regulation of intracellular signal transduction negative regulation of canonical NF-kappaB signal transduction regulation of signal transduction intracellular signal transduction negative regulation of cell communication cell communication regulation of intracellular signal transduction intracellular signaling cassette signal transduction regulation of signaling negative regulation of response to stimulus negative regulation of signal transduction canonical NF-kappaB signal transduction regulation of response to stimulus regulation of cell communication regulation of canonical NF-kappaB signal transduction catabolic process autophagy metabolic process process utilizing autophagic mechanism biological process involved in interspecies interaction between organisms immune response response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus immune system process defense response to other organism innate immune response response to external biotic stimulus translesion synthesis primary metabolic process DNA metabolic process nucleobase-containing compound biosynthetic process DNA damage tolerance macromolecule biosynthetic process nucleic acid metabolic process DNA synthesis involved in DNA replication nucleobase-containing compound metabolic process nucleic acid biosynthetic process DNA replication biosynthetic process macromolecule metabolic process DNA biosynthetic process protein deubiquitination monoubiquitinated protein deubiquitination protein modification by small protein removal macromolecule modification protein metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation or removal regulation of protein stability regulation of biological quality DNA repair signal transduction by p53 class mediator DNA damage response, signal transduction by p53 class mediator signal transduction in response to DNA damage cellular component disassembly ribosome disassembly translation gene expression protein biosynthetic process organelle disassembly translational elongation cytoplasmic translation cytoplasmic translational elongation rescue of stalled cytosolic ribosome regulation of catabolic process regulation of autophagy regulation of metabolic process proteolysis response to peptide cellular response to interleukin-1 response to chemical response to cytokine cellular response to cytokine stimulus response to interleukin-1	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen protein-containing complex early endosome endosome intracellular vesicle endomembrane system cytoplasmic vesicle vesicle cytosolic ribosome membraneless organelle intracellular membraneless organelle ribosome
A, B, C, D	Ras GTPase-activating protein-binding protein 1	nucleic acid conformation isomerase activity isomerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid helicase activity ATP-dependent activity, acting on RNA ATP-dependent activity ATP-dependent activity, acting on DNA DNA/RNA helicase activity catalytic activity, acting on DNA catalytic activity macromolecular conformation isomerase activity molecular condensate scaffold activity protein-macromolecule adaptor activity nucleic acid conformation isomerase activity isomerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid helicase activity ATP-dependent activity, acting on RNA ATP-dependent activity ATP-dependent activity, acting on DNA DNA/RNA helicase activity catalytic activity, acting on DNA catalytic activity macromolecular conformation isomerase activity molecular condensate scaffold activity protein-macromolecule adaptor activity molecular adaptor activity DNA helicase activity RNA binding binding nucleic acid binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding mRNA binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides RNA helicase activity endonuclease activity nuclease activity ribonucleoprotein complex binding protein-containing complex binding ribosomal small subunit binding ribosome binding	biological process involved in interspecies interaction between organisms response to stimulus immune response response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus immune system process defense response to other organism response to stress innate immune response response to external biotic stimulus cellular response to stimulus biological process involved in interspecies interaction between organisms response to stimulus immune response response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus immune system process defense response to other organism response to stress innate immune response response to external biotic stimulus cellular response to stimulus regulation of biological process small GTPase-mediated signal transduction regulation of cellular process signaling Ras protein signal transduction biological regulation intracellular signal transduction cell communication intracellular signaling cassette cellular process signal transduction cellular component biogenesis cellular component organization organelle organization cellular component assembly stress granule assembly organelle assembly membraneless organelle assembly cellular component organization or biogenesis defense response to virus response to virus multicellular organismal process positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process cytokine production regulation of cytokine production positive regulation of macromolecule metabolic process regulation of multicellular organismal process positive regulation of cellular process regulation of biosynthetic process positive regulation of type I interferon production type I interferon production regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression positive regulation of multicellular organismal process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process positive regulation of cytokine production regulation of metabolic process regulation of type I interferon production	cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction somatodendritic compartment cell body perikaryon neuronal cell body intracellular anatomical structure cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule intracellular organelle cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction somatodendritic compartment cell body perikaryon neuronal cell body intracellular anatomical structure cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule intracellular organelle organelle membraneless organelle cytoplasm supramolecular complex cytoplasmic stress granule cytosol membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E, F, G, H	IPR018200	Ubiquitin specific protease, conserved site	Conserved Site
E, F, G, H	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
E, F, G, H	IPR050164	Ubiquitin carboxyl-terminal hydrolases	Family
E, F, G, H	IPR009818	PAM2 motif	Conserved Site
E, F, G, H	IPR028889	Ubiquitin specific protease UPS, catalytic domain	Domain
E, F, G, H	IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Domain
A, B, C, D	IPR032710	NTF2-like domain superfamily	Homologous Superfamily
A, B, C, D	IPR039539	Ras GTPase-activating protein-binding protein	Family
A, B, C, D	IPR000504	RNA recognition motif domain	Domain
A, B, C, D	IPR018222	Nuclear transport factor 2, eukaryote	Domain
A, B, C, D	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
A, B, C, D	IPR035979	RNA-binding domain superfamily	Homologous Superfamily
A, B, C, D	IPR034374	G3BP1, RNA recognition motif	Domain
A, B, C, D	IPR002075	Nuclear transport factor 2 domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
E, F, G, H	: Q14694	ovarian cancer
A, B, C, D	: Q13283	Sjogren syndrome astrocytic tumor exocrine pancreatic carcinoma glioblastoma large cell medulloblastoma malignant pancreatic neoplasm osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia tuberculosis atypical teratoid rhabdoid tumor gastric cancer hepatocellular carcinoma lung adenocarcinoma medulloblastoma ovarian cancer Sjogren syndrome astrocytic tumor exocrine pancreatic carcinoma glioblastoma large cell medulloblastoma malignant pancreatic neoplasm osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia tuberculosis atypical teratoid rhabdoid tumor gastric cancer hepatocellular carcinoma lung adenocarcinoma medulloblastoma ovarian cancer psoriasis ulcerative colitis breast cancer gastric carcinoma IgA glomerulonephritis lymphoplasmacytic lymphoma myopathy pancreatic intraductal papillary-mucinous carcinoma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.