8TRO

Rod from high-resolution phycobilisome quenched by OCP (local refinement)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth 0]	SCOP2B Superfamily	Globin-like	8064876	3000554	SCOP2B (2022-06-29)
AA [auth Q]	SCOP2B Superfamily	Globin-like	8064876	3000554	SCOP2B (2022-06-29)
C [auth 2]	SCOP2B Superfamily	Globin-like	8064876	3000554	SCOP2B (2022-06-29)
CA [auth S]	SCOP2B Superfamily	Globin-like	8064876	3000554	SCOP2B (2022-06-29)
E [auth 4]	SCOP2B Superfamily	Globin-like	8064876	3000554	SCOP2B (2022-06-29)
EA [auth U]	SCOP2B Superfamily	Globin-like	8064876	3000554	SCOP2B (2022-06-29)
G [auth 6]	SCOP2B Superfamily	Globin-like	8064876	3000554	SCOP2B (2022-06-29)
GA [auth W]	SCOP2B Superfamily	Globin-like	8064876	3000554	SCOP2B (2022-06-29)
I [auth 8]	SCOP2B Superfamily	Globin-like	8064876	3000554	SCOP2B (2022-06-29)
IA [auth Y]	SCOP2B Superfamily	Globin-like	8064876	3000554	SCOP2B (2022-06-29)
K [auth A]	SCOP2B Superfamily	Globin-like	8064876	3000554	SCOP2B (2022-06-29)
M [auth C]	SCOP2B Superfamily	Globin-like	8064876	3000554	SCOP2B (2022-06-29)
O [auth E]	SCOP2B Superfamily	Globin-like	8064876	3000554	SCOP2B (2022-06-29)
Q [auth G]	SCOP2B Superfamily	Globin-like	8064876	3000554	SCOP2B (2022-06-29)
S [auth I]	SCOP2B Superfamily	Globin-like	8064876	3000554	SCOP2B (2022-06-29)
U [auth K]	SCOP2B Superfamily	Globin-like	8064876	3000554	SCOP2B (2022-06-29)
W [auth M]	SCOP2B Superfamily	Globin-like	8064876	3000554	SCOP2B (2022-06-29)
Y [auth O]	SCOP2B Superfamily	Globin-like	8064876	3000554	SCOP2B (2022-06-29)
B [auth 1]	SCOP2B Superfamily	Globin-like	8064834	3000554	SCOP2B (2022-06-29)
BA [auth R]	SCOP2B Superfamily	Globin-like	8064834	3000554	SCOP2B (2022-06-29)
D [auth 3]	SCOP2B Superfamily	Globin-like	8064834	3000554	SCOP2B (2022-06-29)
DA [auth T]	SCOP2B Superfamily	Globin-like	8064834	3000554	SCOP2B (2022-06-29)
F [auth 5]	SCOP2B Superfamily	Globin-like	8064834	3000554	SCOP2B (2022-06-29)
FA [auth V]	SCOP2B Superfamily	Globin-like	8064834	3000554	SCOP2B (2022-06-29)
H [auth 7]	SCOP2B Superfamily	Globin-like	8064834	3000554	SCOP2B (2022-06-29)
HA [auth X]	SCOP2B Superfamily	Globin-like	8064834	3000554	SCOP2B (2022-06-29)
J [auth 9]	SCOP2B Superfamily	Globin-like	8064834	3000554	SCOP2B (2022-06-29)
JA [auth Z]	SCOP2B Superfamily	Globin-like	8064834	3000554	SCOP2B (2022-06-29)
L [auth B]	SCOP2B Superfamily	Globin-like	8064834	3000554	SCOP2B (2022-06-29)
N [auth D]	SCOP2B Superfamily	Globin-like	8064834	3000554	SCOP2B (2022-06-29)
P [auth F]	SCOP2B Superfamily	Globin-like	8064834	3000554	SCOP2B (2022-06-29)
R [auth H]	SCOP2B Superfamily	Globin-like	8064834	3000554	SCOP2B (2022-06-29)
T [auth J]	SCOP2B Superfamily	Globin-like	8064834	3000554	SCOP2B (2022-06-29)
V [auth L]	SCOP2B Superfamily	Globin-like	8064834	3000554	SCOP2B (2022-06-29)
X [auth N]	SCOP2B Superfamily	Globin-like	8064834	3000554	SCOP2B (2022-06-29)
Z [auth P]	SCOP2B Superfamily	Globin-like	8064834	3000554	SCOP2B (2022-06-29)
LA [auth b]	SCOP2B Superfamily	Phycobilisome linker domain-like	8052317	3002104	SCOP2B (2022-06-29)
LA [auth b]	SCOP2B Superfamily	Phycobilisome linker domain-like	8052316	3002104	SCOP2B (2022-06-29)
MA [auth c]	SCOP2B Superfamily	Phycobilisome linker domain-like	8052324	3002104	SCOP2B (2022-06-29)
MA [auth c]	SCOP2B Superfamily	Phycobilisome linker domain-like	8052325	3002104	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth 0], AA [auth Q], C [auth 2], CA [auth S], E [auth 4], A [auth 0], AA [auth Q], C [auth 2], CA [auth S], E [auth 4], EA [auth U], G [auth 6], GA [auth W], I [auth 8], IA [auth Y], K [auth A], M [auth C], O [auth E], Q [auth G], S [auth I], U [auth K], W [auth M], Y [auth O]	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain
A [auth 0], AA [auth Q], C [auth 2], CA [auth S], E [auth 4], A [auth 0], AA [auth Q], C [auth 2], CA [auth S], E [auth 4], EA [auth U], G [auth 6], GA [auth W], I [auth 8], IA [auth Y], K [auth A], M [auth C], O [auth E], Q [auth G], S [auth I], U [auth K], W [auth M], Y [auth O]	PF00427	Phycobilisome Linker polypeptide (PBS_linker_poly)	Phycobilisome Linker polypeptide	-	Family
B [auth 1], BA [auth R], D [auth 3], DA [auth T], F [auth 5], B [auth 1], BA [auth R], D [auth 3], DA [auth T], F [auth 5], FA [auth V], H [auth 7], HA [auth X], J [auth 9], JA [auth Z], L [auth B], N [auth D], P [auth F], R [auth H], T [auth J], V [auth L], X [auth N], Z [auth P]	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain
B [auth 1], BA [auth R], D [auth 3], DA [auth T], F [auth 5], B [auth 1], BA [auth R], D [auth 3], DA [auth T], F [auth 5], FA [auth V], H [auth 7], HA [auth X], J [auth 9], JA [auth Z], L [auth B], N [auth D], P [auth F], R [auth H], T [auth J], V [auth L], X [auth N], Z [auth P]	PF00427	Phycobilisome Linker polypeptide (PBS_linker_poly)	Phycobilisome Linker polypeptide	-	Family
B [auth 1], BA [auth R], D [auth 3], DA [auth T], F [auth 5], B [auth 1], BA [auth R], D [auth 3], DA [auth T], F [auth 5], FA [auth V], H [auth 7], HA [auth X], J [auth 9], JA [auth Z], L [auth B], N [auth D], P [auth F], R [auth H], T [auth J], V [auth L], X [auth N], Z [auth P]	PF01383	CpcD/allophycocyanin linker domain (CpcD)	CpcD/allophycocyanin linker domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 0], AA [auth Q], C [auth 2], CA [auth S], E [auth 4], A [auth 0], AA [auth Q], C [auth 2], CA [auth S], E [auth 4], EA [auth U], G [auth 6], GA [auth W], I [auth 8], IA [auth Y], K [auth A], M [auth C], O [auth E], Q [auth G], S [auth I], U [auth K], W [auth M], Y [auth O]	C-phycocyanin alpha subunit	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
B [auth 1], BA [auth R], D [auth 3], DA [auth T], F [auth 5], B [auth 1], BA [auth R], D [auth 3], DA [auth T], F [auth 5], FA [auth V], H [auth 7], HA [auth X], J [auth 9], JA [auth Z], L [auth B], N [auth D], P [auth F], R [auth H], T [auth J], V [auth L], X [auth N], Z [auth P]	C-phycocyanin beta subunit	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
KA [auth a]	Phycobilisome rod-core linker polypeptide CpcG	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
LA [auth b]	Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod 1	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
MA [auth c]	Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod 2	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
NA [auth d]	Phycobilisome 8.9 kDa linker polypeptide, phycocyanin-associated, rod	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth 0], AA [auth Q], C [auth 2], CA [auth S], E [auth 4], A [auth 0], AA [auth Q], C [auth 2], CA [auth S], E [auth 4], EA [auth U], G [auth 6], GA [auth W], I [auth 8], IA [auth Y], K [auth A], M [auth C], O [auth E], Q [auth G], S [auth I], U [auth K], W [auth M], Y [auth O]	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
A [auth 0], AA [auth Q], C [auth 2], CA [auth S], E [auth 4], A [auth 0], AA [auth Q], C [auth 2], CA [auth S], E [auth 4], EA [auth U], G [auth 6], GA [auth W], I [auth 8], IA [auth Y], K [auth A], M [auth C], O [auth E], Q [auth G], S [auth I], U [auth K], W [auth M], Y [auth O]	IPR006246	Phycocyanin, alpha subunit	Family
A [auth 0], AA [auth Q], C [auth 2], CA [auth S], E [auth 4], A [auth 0], AA [auth Q], C [auth 2], CA [auth S], E [auth 4], EA [auth U], G [auth 6], GA [auth W], I [auth 8], IA [auth Y], K [auth A], M [auth C], O [auth E], Q [auth G], S [auth I], U [auth K], W [auth M], Y [auth O]	IPR009050	Globin-like superfamily	Homologous Superfamily
A [auth 0], AA [auth Q], C [auth 2], CA [auth S], E [auth 4], A [auth 0], AA [auth Q], C [auth 2], CA [auth S], E [auth 4], EA [auth U], G [auth 6], GA [auth W], I [auth 8], IA [auth Y], K [auth A], M [auth C], O [auth E], Q [auth G], S [auth I], U [auth K], W [auth M], Y [auth O]	IPR012128	Phycobilisome, alpha/beta subunit	Family
B [auth 1], BA [auth R], D [auth 3], DA [auth T], F [auth 5], B [auth 1], BA [auth R], D [auth 3], DA [auth T], F [auth 5], FA [auth V], H [auth 7], HA [auth X], J [auth 9], JA [auth Z], L [auth B], N [auth D], P [auth F], R [auth H], T [auth J], V [auth L], X [auth N], Z [auth P]	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
B [auth 1], BA [auth R], D [auth 3], DA [auth T], F [auth 5], B [auth 1], BA [auth R], D [auth 3], DA [auth T], F [auth 5], FA [auth V], H [auth 7], HA [auth X], J [auth 9], JA [auth Z], L [auth B], N [auth D], P [auth F], R [auth H], T [auth J], V [auth L], X [auth N], Z [auth P]	IPR006247	Phycocyanin, beta subunit	Family
B [auth 1], BA [auth R], D [auth 3], DA [auth T], F [auth 5], B [auth 1], BA [auth R], D [auth 3], DA [auth T], F [auth 5], FA [auth V], H [auth 7], HA [auth X], J [auth 9], JA [auth Z], L [auth B], N [auth D], P [auth F], R [auth H], T [auth J], V [auth L], X [auth N], Z [auth P]	IPR009050	Globin-like superfamily	Homologous Superfamily
B [auth 1], BA [auth R], D [auth 3], DA [auth T], F [auth 5], B [auth 1], BA [auth R], D [auth 3], DA [auth T], F [auth 5], FA [auth V], H [auth 7], HA [auth X], J [auth 9], JA [auth Z], L [auth B], N [auth D], P [auth F], R [auth H], T [auth J], V [auth L], X [auth N], Z [auth P]	IPR012128	Phycobilisome, alpha/beta subunit	Family
KA [auth a]	IPR016470	Phycobilisome linker protein	Family
KA [auth a]	IPR001297	Phycobilisome linker domain	Domain
KA [auth a]	IPR038255	Phycobilisome linker domain superfamily	Homologous Superfamily
LA [auth b]	IPR016470	Phycobilisome linker protein	Family
LA [auth b]	IPR008213	CpcD-like domain	Domain
LA [auth b]	IPR001297	Phycobilisome linker domain	Domain
LA [auth b]	IPR038255	Phycobilisome linker domain superfamily	Homologous Superfamily
MA [auth c]	IPR016470	Phycobilisome linker protein	Family
MA [auth c]	IPR008213	CpcD-like domain	Domain
MA [auth c]	IPR001297	Phycobilisome linker domain	Domain
MA [auth c]	IPR038255	Phycobilisome linker domain superfamily	Homologous Superfamily
NA [auth d]	IPR008213	CpcD-like domain	Domain

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B [auth 1], BA [auth R], D [auth 3], DA [auth T], F [auth 5], B [auth 1], BA [auth R], D [auth 3], DA [auth T], F [auth 5], FA [auth V], H [auth 7], HA [auth X], J [auth 9], JA [auth Z], L [auth B], N [auth D], P [auth F], R [auth H], T [auth J], V [auth L], X [auth N], Z [auth P]	MEN	Parent Component: ASN RESID: AA0070 PSI-MOD : N4-methyl-L-asparagine MOD:00079