8TVA | pdb_00008tva

Outer Mat-T4P complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
U [auth CD]	CoV_NSP10	e8tvaCD1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
T [auth CC]	CoV_NSP10	e8tvaCC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
S [auth CB]	CoV_NSP10	e8tvaCB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
R [auth CA]	CoV_NSP10	e8tvaCA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
Q [auth BZ]	CoV_NSP10	e8tvaBZ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
P [auth BY]	CoV_NSP10	e8tvaBY1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
O [auth BX]	CoV_NSP10	e8tvaBX1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
N [auth BW]	CoV_NSP10	e8tvaBW1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
M [auth BV]	CoV_NSP10	e8tvaBV1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
L [auth BU]	CoV_NSP10	e8tvaBU1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
K [auth BT]	CoV_NSP10	e8tvaBT1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
J [auth BS]	CoV_NSP10	e8tvaBS1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
I [auth BR]	CoV_NSP10	e8tvaBR1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
H [auth BQ]	CoV_NSP10	e8tvaBQ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
G [auth BP]	CoV_NSP10	e8tvaBP1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
F [auth BO]	CoV_NSP10	e8tvaBO1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
E [auth BN]	CoV_NSP10	e8tvaBN1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
D [auth BM]	CoV_NSP10	e8tvaBM1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
C [auth BL]	CoV_NSP10	e8tvaBL1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
B [auth BK]	CoV_NSP10	e8tvaBK1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth CJ], BA [auth CK], CA [auth CL], DA [auth CM], EA [auth CN], AA [auth CJ], BA [auth CK], CA [auth CL], DA [auth CM], EA [auth CN], FA [auth CO], GA [auth CP], HA [auth CQ], IA [auth CR], JA [auth CS], KA [auth CT], LA [auth CU], MA [auth CV], NA [auth CW], OA [auth CX], V [auth CE], W [auth CF], X [auth CG], Y [auth CH], Z [auth CI]	Fimbrial protein	-	protein transport across the cell outer membrane establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion by the type II secretion system protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport protein transport across the cell outer membrane establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion by the type II secretion system protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport macromolecule localization cellular process intracellular protein localization cell adhesion	protein-containing complex type II protein secretion system complex pilus cell projection cellular anatomical structure
B [auth BK], C [auth BL], D [auth BM], E [auth BN], F [auth BO], B [auth BK], C [auth BL], D [auth BM], E [auth BN], F [auth BO], G [auth BP], H [auth BQ], I [auth BR], J [auth BS], K [auth BT], L [auth BU], M [auth BV], N [auth BW], O [auth BX], P [auth BY], Q [auth BZ], R [auth CA], S [auth CB], T [auth CC], U [auth CD]	Fimbrial protein	-	protein transport across the cell outer membrane establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion by the type II secretion system protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport protein transport across the cell outer membrane establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion by the type II secretion system protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport macromolecule localization cellular process intracellular protein localization cell adhesion	protein-containing complex type II protein secretion system complex pilus cell projection cellular anatomical structure
A [auth b]	Maturation protein	-	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction virion attachment to host cell pilus symbiont entry into host cell viral process symbiont entry into host	virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth CJ], BA [auth CK], CA [auth CL], DA [auth CM], EA [auth CN], AA [auth CJ], BA [auth CK], CA [auth CL], DA [auth CM], EA [auth CN], FA [auth CO], GA [auth CP], HA [auth CQ], IA [auth CR], JA [auth CS], KA [auth CT], LA [auth CU], MA [auth CV], NA [auth CW], OA [auth CX], V [auth CE], W [auth CF], X [auth CG], Y [auth CH], Z [auth CI]	IPR000983	General secretion pathway protein G-type pilin	Family
AA [auth CJ], BA [auth CK], CA [auth CL], DA [auth CM], EA [auth CN], AA [auth CJ], BA [auth CK], CA [auth CL], DA [auth CM], EA [auth CN], FA [auth CO], GA [auth CP], HA [auth CQ], IA [auth CR], JA [auth CS], KA [auth CT], LA [auth CU], MA [auth CV], NA [auth CW], OA [auth CX], V [auth CE], W [auth CF], X [auth CG], Y [auth CH], Z [auth CI]	IPR012902	Prokaryotic N-terminal methylation site	PTM
AA [auth CJ], BA [auth CK], CA [auth CL], DA [auth CM], EA [auth CN], AA [auth CJ], BA [auth CK], CA [auth CL], DA [auth CM], EA [auth CN], FA [auth CO], GA [auth CP], HA [auth CQ], IA [auth CR], JA [auth CS], KA [auth CT], LA [auth CU], MA [auth CV], NA [auth CW], OA [auth CX], V [auth CE], W [auth CF], X [auth CG], Y [auth CH], Z [auth CI]	IPR001082	Fimbrial protein pilin	Family
AA [auth CJ], BA [auth CK], CA [auth CL], DA [auth CM], EA [auth CN], AA [auth CJ], BA [auth CK], CA [auth CL], DA [auth CM], EA [auth CN], FA [auth CO], GA [auth CP], HA [auth CQ], IA [auth CR], JA [auth CS], KA [auth CT], LA [auth CU], MA [auth CV], NA [auth CW], OA [auth CX], V [auth CE], W [auth CF], X [auth CG], Y [auth CH], Z [auth CI]	IPR045584	Pilin-like	Homologous Superfamily
B [auth BK], C [auth BL], D [auth BM], E [auth BN], F [auth BO], B [auth BK], C [auth BL], D [auth BM], E [auth BN], F [auth BO], G [auth BP], H [auth BQ], I [auth BR], J [auth BS], K [auth BT], L [auth BU], M [auth BV], N [auth BW], O [auth BX], P [auth BY], Q [auth BZ], R [auth CA], S [auth CB], T [auth CC], U [auth CD]	IPR000983	General secretion pathway protein G-type pilin	Family
B [auth BK], C [auth BL], D [auth BM], E [auth BN], F [auth BO], B [auth BK], C [auth BL], D [auth BM], E [auth BN], F [auth BO], G [auth BP], H [auth BQ], I [auth BR], J [auth BS], K [auth BT], L [auth BU], M [auth BV], N [auth BW], O [auth BX], P [auth BY], Q [auth BZ], R [auth CA], S [auth CB], T [auth CC], U [auth CD]	IPR012902	Prokaryotic N-terminal methylation site	PTM
B [auth BK], C [auth BL], D [auth BM], E [auth BN], F [auth BO], B [auth BK], C [auth BL], D [auth BM], E [auth BN], F [auth BO], G [auth BP], H [auth BQ], I [auth BR], J [auth BS], K [auth BT], L [auth BU], M [auth BV], N [auth BW], O [auth BX], P [auth BY], Q [auth BZ], R [auth CA], S [auth CB], T [auth CC], U [auth CD]	IPR001082	Fimbrial protein pilin	Family
B [auth BK], C [auth BL], D [auth BM], E [auth BN], F [auth BO], B [auth BK], C [auth BL], D [auth BM], E [auth BN], F [auth BO], G [auth BP], H [auth BQ], I [auth BR], J [auth BS], K [auth BT], L [auth BU], M [auth BV], N [auth BW], O [auth BX], P [auth BY], Q [auth BZ], R [auth CA], S [auth CB], T [auth CC], U [auth CD]	IPR045584	Pilin-like	Homologous Superfamily
A [auth b]	IPR005563	Assembly protein	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.