Annotations: 8V3P

CCP5 in complex with Glu-P-peptide 2 transition state analog

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	WD40	e8v3pA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF18027	Cytosolic carboxypeptidase N-terminal domain (Pepdidase_M14_N)	Cytosolic carboxypeptidase N-terminal domain	This entry corresponds to the N-terminal domain of cytosolic carboxypeptidases. The N-terminal domain folds into a nine-stranded antiparallel beta sandwich [1]. This domain is specific to CCP proteins and is absent in other carboxypeptidases. It has ...	This entry corresponds to the N-terminal domain of cytosolic carboxypeptidases. The N-terminal domain folds into a nine-stranded antiparallel beta sandwich [1]. This domain is specific to CCP proteins and is absent in other carboxypeptidases. It has been hypothesised that the N-terminal domain might contribute to folding, might have a regulatory function and/or might be involved in binding other proteins.	Domain
A	PF00246	Zinc carboxypeptidase (Peptidase_M14)	Zinc carboxypeptidase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth I]	Tubulin beta-2A chain	binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding structural constituent of cytoskeleton structural molecule activity cation binding metal ion binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	cellular process cell cycle mitotic cell cycle developmental process multicellular organismal process head development forebrain development animal organ development brain development nervous system development pallium development cerebral cortex development multicellular organism development central nervous system development cellular process cell cycle mitotic cell cycle developmental process multicellular organismal process head development forebrain development animal organ development brain development nervous system development pallium development cerebral cortex development multicellular organism development central nervous system development anatomical structure development telencephalon development system development cellular component organization organelle organization microtubule cytoskeleton organization microtubule-based process cellular component organization or biogenesis cytoskeleton organization neuron migration cellular developmental process generation of neurons neurogenesis cell differentiation cell migration cell motility	extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm intracellular organelle mitotic spindle cytoskeleton extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm intracellular organelle mitotic spindle cytoskeleton spindle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton intercellular bridge polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex nucleus intracellular membrane-bounded organelle
A	Cytosolic carboxypeptidase-like protein 5	peptidase activity catalytic activity, acting on a protein metallocarboxypeptidase activity hydrolase activity metallopeptidase activity exopeptidase activity catalytic activity metalloexopeptidase activity carboxypeptidase activity cytoskeletal protein binding protein binding binding tubulin binding cation binding peptidase activity catalytic activity, acting on a protein metallocarboxypeptidase activity hydrolase activity metallopeptidase activity exopeptidase activity catalytic activity metalloexopeptidase activity carboxypeptidase activity cytoskeletal protein binding protein binding binding tubulin binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	primary metabolic process protein deglutamylation peptidyl-glutamic acid modification macromolecule modification peptidyl-amino acid modification metabolic process cellular process protein side chain deglutamylation protein metabolic process macromolecule metabolic process protein modification process C-terminal protein amino acid modification C-terminal protein deglutamylation post-translational protein modification primary metabolic process protein deglutamylation peptidyl-glutamic acid modification macromolecule modification peptidyl-amino acid modification metabolic process cellular process protein side chain deglutamylation protein metabolic process macromolecule metabolic process protein modification process C-terminal protein amino acid modification C-terminal protein deglutamylation post-translational protein modification biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus proteolysis protein branching point deglutamylation	midbody cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle mitotic spindle cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton membrane-bounded organelle midbody cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle mitotic spindle cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth I]	IPR008280	Tubulin/FtsZ, C-terminal	Homologous Superfamily
B [auth I]	IPR017975	Tubulin, conserved site	Conserved Site
B [auth I]	IPR023123	Tubulin, C-terminal	Homologous Superfamily
B [auth I]	IPR002453	Beta tubulin	Family
B [auth I]	IPR013838	Beta tubulin, autoregulation binding site	Binding Site
B [auth I]	IPR018316	Tubulin/FtsZ, 2-layer sandwich domain	Domain
B [auth I]	IPR003008	Tubulin/FtsZ, GTPase domain	Domain
B [auth I]	IPR037103	Tubulin/FtsZ-like, C-terminal domain	Homologous Superfamily
B [auth I]	IPR000217	Tubulin	Family
B [auth I]	IPR036525	Tubulin/FtsZ, GTPase domain superfamily	Homologous Superfamily
A	IPR040626	Cytosolic carboxypeptidase, N-terminal	Domain
A	IPR034286	Cytosolic carboxypeptidase-like protein 5 catalytic domain	Domain
A	IPR050821	Cytosolic carboxypeptidase	Family
A	IPR000834	Peptidase M14, carboxypeptidase A	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B [auth I]	: Q13885	complex cortical dysplasia with other brain malformations 5 acute myeloid leukemia ovarian cancer Creutzfeldt Jacob disease gastric cancer juvenile idiopathic arthritis Diffuse large B-cell lymphoma refractory Emery-Dreifuss muscular dystrophy fallopian tube carcinoma myopathy gastric carcinoma ocular hypertension acute lymphoblastic leukemia hypertensive disorder prostate cancer complex cortical dysplasia with other brain malformations 5 acute myeloid leukemia ovarian cancer Creutzfeldt Jacob disease gastric cancer juvenile idiopathic arthritis Diffuse large B-cell lymphoma refractory Emery-Dreifuss muscular dystrophy fallopian tube carcinoma myopathy gastric carcinoma ocular hypertension acute lymphoblastic leukemia hypertensive disorder prostate cancer astrocytic tumor breast carcinoma kidney Wilms tumor ulcerative colitis limb-girdle muscular dystrophy malignant ependymoma exocrine pancreatic carcinoma nasopharyngeal carcinoma gestational trophoblastic neoplasm oligodendroglioma intellectual disability Pick disease amyotrophic lateral sclerosis juvenile dermatomyositis psoriasis atypical teratoid rhabdoid tumor testicular cancer Burkitt lymphoma Langerhans cell histiocytosis cerebrovascular disorder liposarcoma malignant pancreatic neoplasm dermatomyositis Duchenne muscular dystrophy facioscapulohumeral muscular dystrophy mycosis fungoides neuroblastoma hepatocellular carcinoma non-small cell lung carcinoma Hodgkins lymphoma open-angle glaucoma interstitial cystitis pilocytic astrocytoma rhabdomyosarcoma Becker muscular dystrophy Kaposi's sarcoma transitional cell carcinoma large cell medulloblastoma colorectal cancer
A	: Q8NDL9	retinitis pigmentosa retinitis pigmentosa 75 astrocytic tumor cutaneous lupus erythematosus lung cancer medulloblastoma pancreatic intraductal papillary-mucinous neoplasm atypical teratoid rhabdoid tumor glioblastoma malignant ependymoma oligodendroglioma retinal degeneration cone-rod dystrophy large cell medulloblastoma malignant glioma retinitis pigmentosa retinitis pigmentosa 75 astrocytic tumor cutaneous lupus erythematosus lung cancer medulloblastoma pancreatic intraductal papillary-mucinous neoplasm atypical teratoid rhabdoid tumor glioblastoma malignant ependymoma oligodendroglioma retinal degeneration cone-rod dystrophy large cell medulloblastoma malignant glioma ovarian cancer

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.