8V3Z | pdb_00008v3z

CryoEM Structure of Diffocin - postcontracted - Collar - transitional state

External Resource: Annotation

Domain Annotation: ECOD Classification
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
AA [auth I]	WD40	e8v3zI1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
E [auth C]	WD40	e8v3zC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
F [auth D]	WD40	e8v3zD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
G [auth B]	WD40	e8v3zB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
HA [auth X]	WD40	e8v3zX1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
IA [auth R]	WD40	e8v3zR1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
L [auth S]	WD40	e8v3zS1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
M [auth V]	WD40	e8v3zV1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
N [auth P]	WD40	e8v3zP1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
NA [auth f]	WD40	e8v3zf1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
OA [auth g]	WD40	e8v3zg1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
PA [auth e]	WD40	e8v3ze1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
S [auth T]	WD40	e8v3zT1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
T [auth W]	WD40	e8v3zW1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
U [auth Q]	WD40	e8v3zQ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
Z [auth H]	WD40	e8v3zH1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
GA [auth U]	WD40	e8v3zU1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
BA [auth G]	WD40	e8v3zG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
D [auth A]	WD40	e8v3zA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
EA [auth m]	WD40	e8v3zm1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
FA [auth O]	WD40	e8v3zO1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
I [auth Y]	WD40	e8v3zY1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
J [auth k]	WD40	e8v3zk1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
K [auth M]	WD40	e8v3zM1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
LA [auth i]	WD40	e8v3zi1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
MA [auth d]	WD40	e8v3zd1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
P [auth Z]	WD40	e8v3zZ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
Q [auth l]	WD40	e8v3zl1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
R [auth N]	WD40	e8v3zN1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
W [auth J]	WD40	e8v3zJ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
X [auth K]	WD40	e8v3zK1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
Y [auth F]	WD40	e8v3zF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
KA [auth h]	WD40	e8v3zh1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
DA [auth c]	WD40	e8v3zc1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
C [auth a]	WD40	e8v3za1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
B [auth E]	WD40	e8v3zE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth b], CA [auth p], H [auth n], JA [auth j], O [auth o], A [auth b], CA [auth p], H [auth n], JA [auth j], O [auth o], V [auth L]	IPR049254	Phage tail terminator	Family
AA [auth I], BA [auth G], E [auth C], F [auth D], G [auth B], AA [auth I], BA [auth G], E [auth C], F [auth D], G [auth B], GA [auth U], HA [auth X], IA [auth R], L [auth S], M [auth V], N [auth P], NA [auth f], OA [auth g], PA [auth e], S [auth T], T [auth W], U [auth Q], Z [auth H]	IPR020287	Tail sheath protein, C-terminal domain	Domain
AA [auth I], BA [auth G], E [auth C], F [auth D], G [auth B], AA [auth I], BA [auth G], E [auth C], F [auth D], G [auth B], GA [auth U], HA [auth X], IA [auth R], L [auth S], M [auth V], N [auth P], NA [auth f], OA [auth g], PA [auth e], S [auth T], T [auth W], U [auth Q], Z [auth H]	IPR035089	Tail sheath protein, subtilisin-like domain	Domain
B [auth E], C [auth a], D [auth A], DA [auth c], EA [auth m], B [auth E], C [auth a], D [auth A], DA [auth c], EA [auth m], FA [auth O], I [auth Y], J [auth k], K [auth M], KA [auth h], LA [auth i], MA [auth d], P [auth Z], Q [auth l], R [auth N], W [auth J], X [auth K], Y [auth F]	IPR018989	Phage tail tube protein	Family
B [auth E], C [auth a], D [auth A], DA [auth c], EA [auth m], B [auth E], C [auth a], D [auth A], DA [auth c], EA [auth m], FA [auth O], I [auth Y], J [auth k], K [auth M], KA [auth h], LA [auth i], MA [auth d], P [auth Z], Q [auth l], R [auth N], W [auth J], X [auth K], Y [auth F]	IPR038628	XkdM-like superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.