OGG1 bound to a nucleosome containing 8oxoG at SHL-6 (composite map)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| K | SCOP2B Superfamily | DNA-glycosylase | 8036319 | 3000905 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | TATA-box binding protein-like | 8036320 | 3000705 | SCOP2B (2022-06-29) |
| H [auth D] | SCOP2B Superfamily | Core histone-like | 8066267 | 3001387 | SCOP2B (2022-06-29) |
| D [auth H] | SCOP2B Superfamily | Core histone-like | 8066267 | 3001387 | SCOP2B (2022-06-29) |
| G [auth C] | SCOP2B Superfamily | Core histone-like | 8067130 | 3001387 | SCOP2B (2022-06-29) |
| C [auth G] | SCOP2B Superfamily | Core histone-like | 8067130 | 3001387 | SCOP2B (2022-06-29) |
| F [auth B] | SCOP2B Superfamily | Core histone-like | 8070545 | 3001387 | SCOP2B (2022-06-29) |
| B [auth F] | SCOP2B Superfamily | Core histone-like | 8070545 | 3001387 | SCOP2B (2022-06-29) |
| E [auth A] | SCOP2B Superfamily | Core histone-like | 8070531 | 3001387 | SCOP2B (2022-06-29) |
| A [auth E] | SCOP2B Superfamily | Core histone-like | 8070531 | 3001387 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| K | DNA_primase_S | e8vwtK01 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_primase_S | ECOD (v294.2) |
| H [auth D] | WD40 | e8vwtD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| D [auth H] | WD40 | e8vwtH1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| G [auth C] | WD40 | e8vwtC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| C [auth G] | WD40 | e8vwtG1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| F [auth B] | WD40 | e8vwtB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| B [auth F] | WD40 | e8vwtF1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| E [auth A] | WD40 | e8vwtA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| A [auth E] | WD40 | e8vwtE1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF07934 | 8-oxoguanine DNA glycosylase, N-terminal domain (OGG_N) | 8-oxoguanine DNA glycosylase, N-terminal domain | - | Family | |
| PF00730 | HhH-GPD superfamily base excision DNA repair protein (HhH-GPD) | HhH-GPD superfamily base excision DNA repair protein | This family contains a diverse range of structurally related DNA repair proteins. The superfamily is called the HhH-GPD family after its hallmark Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate [2]. This includes endonucle ... | Domain | |
| C [auth G], G [auth C] | PF16211 | C-terminus of histone H2A (Histone_H2A_C) | C-terminus of histone H2A | - | Family |
| B [auth F], F [auth B] | PF15511 | Centromere kinetochore component CENP-T histone fold (CENP-T_C) | Centromere kinetochore component CENP-T histone fold | CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ... | Domain |
| A [auth E], E [auth A] | PF00125 | Core histone H2A/H2B/H3/H4 domain (Histone) | Core histone H2A/H2B/H3/H4 domain | Domain |














