8W8M | pdb_00008w8m

Cryo-EM structure of helical filament of MyD88 TIR

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZB [auth 1A]	WD40	e8w8m1A1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
ZA [auth R2]	WD40	e8w8mR21	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
Z [auth L3]	WD40	e8w8mL31	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
YB [auth Z3]	WD40	e8w8mZ31	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
YA [auth R1]	WD40	e8w8mR11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
Y [auth L2]	WD40	e8w8mL21	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
XC [auth 3F]	WD40	e8w8m3F1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
XB [auth Z2]	WD40	e8w8mZ21	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
XA [auth Q3]	WD40	e8w8mQ31	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
X [auth L1]	WD40	e8w8mL11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
WC [auth 2F]	WD40	e8w8m2F1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
WB [auth Z1]	WD40	e8w8mZ11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
WA [auth Q2]	WD40	e8w8mQ21	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
W [auth K3]	WD40	e8w8mK31	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
VC [auth 3E]	WD40	e8w8m3E1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
VB [auth Y3]	WD40	e8w8mY31	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
VA [auth Q1]	WD40	e8w8mQ11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
V [auth K2]	WD40	e8w8mK21	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
UC [auth 2E]	WD40	e8w8m2E1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
UB [auth Y2]	WD40	e8w8mY21	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
UA [auth P3]	WD40	e8w8mP31	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
U [auth K1]	WD40	e8w8mK11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
TC [auth YD]	WD40	e8w8mYD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
TB [auth V1]	WD40	e8w8mV11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
TA [auth P2]	WD40	e8w8mP21	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
T [auth J3]	WD40	e8w8mJ31	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
SC [auth 1F]	WD40	e8w8m1F1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
SB [auth X3]	WD40	e8w8mX31	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
SA [auth M1]	WD40	e8w8mM11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
S [auth J2]	WD40	e8w8mJ21	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
RC [auth ZF]	WD40	e8w8mZF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
RB [auth X2]	WD40	e8w8mX21	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
RA [auth O3]	WD40	e8w8mO31	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
R [auth A1]	WD40	e8w8mA11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
QC [auth YF]	WD40	e8w8mYF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
QB [auth X1]	WD40	e8w8mX11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
QA [auth O2]	WD40	e8w8mO21	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
Q [auth C3]	WD40	e8w8mC31	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
PC [auth 1E]	WD40	e8w8m1E1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
PB [auth W3]	WD40	e8w8mW31	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
PA [auth O1]	WD40	e8w8mO11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
P [auth C2]	WD40	e8w8mC21	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
OC [auth ZE]	WD40	e8w8mZE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
OB [auth W2]	WD40	e8w8mW21	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
OA [auth N3]	WD40	e8w8mN31	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
O [auth C1]	WD40	e8w8mC11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
NC [auth YE]	WD40	e8w8mYE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
NB [auth W1]	WD40	e8w8mW11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
NA [auth N2]	WD40	e8w8mN21	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
N [auth B3]	WD40	e8w8mB31	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
MC [auth ZD]	WD40	e8w8mZD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
MB [auth V3]	WD40	e8w8mV31	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
MA [auth N1]	WD40	e8w8mN11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
M [auth B2]	WD40	e8w8mB21	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
LC [auth 1B]	WD40	e8w8m1B1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
LB [auth V2]	WD40	e8w8mV21	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
LA [auth M3]	WD40	e8w8mM31	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
L [auth B1]	WD40	e8w8mB11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
KC [auth 3D]	WD40	e8w8m3D1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
KB [auth S1]	WD40	e8w8mS11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
KA [auth M2]	WD40	e8w8mM21	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
K [auth A3]	WD40	e8w8mA31	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
JC [auth 2D]	WD40	e8w8m2D1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
JB [auth U3]	WD40	e8w8mU31	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
JA [auth G1]	WD40	e8w8mG11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
J [auth A2]	WD40	e8w8mA21	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
IC [auth 1D]	WD40	e8w8m1D1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
IB [auth U2]	WD40	e8w8mU21	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
IA [auth I3]	WD40	e8w8mI31	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
I [auth D1]	WD40	e8w8mD11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
HC [auth 3C]	WD40	e8w8m3C1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
HB [auth U1]	WD40	e8w8mU11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
HA [auth I2]	WD40	e8w8mI21	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
H [auth F3]	WD40	e8w8mF31	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
GC [auth 2C]	WD40	e8w8m2C1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
GB [auth T3]	WD40	e8w8mT31	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
GA [auth I1]	WD40	e8w8mI11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
G [auth F2]	WD40	e8w8mF21	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
FC [auth 1C]	WD40	e8w8m1C1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
FB [auth T2]	WD40	e8w8mT21	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
FA [auth H3]	WD40	e8w8mH31	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
F [auth F1]	WD40	e8w8mF11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
EC [auth 3B]	WD40	e8w8m3B1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
EB [auth T1]	WD40	e8w8mT11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
EA [auth H2]	WD40	e8w8mH21	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
E [auth E3]	WD40	e8w8mE31	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
DC [auth 2B]	WD40	e8w8m2B1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
DB [auth S3]	WD40	e8w8mS31	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
DA [auth H1]	WD40	e8w8mH11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
D [auth E2]	WD40	e8w8mE21	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
CC [auth Y1]	WD40	e8w8mY11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
CB [auth S2]	WD40	e8w8mS21	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
CA [auth G3]	WD40	e8w8mG31	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
C [auth E1]	WD40	e8w8mE11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
BC [auth 3A]	WD40	e8w8m3A1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
BB [auth P1]	WD40	e8w8mP11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
BA [auth G2]	WD40	e8w8mG21	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
B [auth D3]	WD40	e8w8mD31	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
AC [auth 2A]	WD40	e8w8m2A1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
AB [auth R3]	WD40	e8w8mR31	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
AA [auth J1]	WD40	e8w8mJ11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
A [auth D2]	Photo_RC	e8w8mD201	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Photo_RC	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], BA [auth G2], BB [auth P1], BC [auth 3A], C [auth E1], CA [auth G3], CB [auth S2], CC [auth Y1], D [auth E2], DA [auth H1], DB [auth S3], DC [auth 2B], E [auth E3], EA [auth H2], EB [auth T1], EC [auth 3B], F [auth F1], FA [auth H3], FB [auth T2], FC [auth 1C], G [auth F2], GA [auth I1], GB [auth T3], GC [auth 2C], H [auth F3], HA [auth I2], HB [auth U1], HC [auth 3C], I [auth D1], IA [auth I3], IB [auth U2], IC [auth 1D], J [auth A2], JA [auth G1], JB [auth U3], JC [auth 2D], K [auth A3], KA [auth M2], KB [auth S1], KC [auth 3D], L [auth B1], LA [auth M3], LB [auth V2], LC [auth 1B], M [auth B2], MA [auth N1], MB [auth V3], MC [auth ZD], N [auth B3], NA [auth N2], NB [auth W1], NC [auth YE], O [auth C1], OA [auth N3], OB [auth W2], OC [auth ZE], P [auth C2], PA [auth O1], PB [auth W3], PC [auth 1E], Q [auth C3], QA [auth O2], QB [auth X1], QC [auth YF], R [auth A1], RA [auth O3], RB [auth X2], RC [auth ZF], S [auth J2], SA [auth M1], SB [auth X3], SC [auth 1F], T [auth J3], TA [auth P2], TB [auth V1], TC [auth YD], U [auth K1], UA [auth P3], UB [auth Y2], UC [auth 2E], V [auth K2], VA [auth Q1], VB [auth Y3], VC [auth 3E], W [auth K3], WA [auth Q2], WB [auth Z1], WC [auth 2F], X [auth L1], XA [auth Q3], XB [auth Z2], XC [auth 3F], Y [auth L2], YA [auth R1], YB [auth Z3], Z [auth L3], ZA [auth R2], ZB [auth 1A]	PF13676	TIR domain (TIR_2)	TIR domain	This is a family of Toll-like receptors.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], BA [auth G2], BB [auth P1], BC [auth 3A], C [auth E1], CA [auth G3], CB [auth S2], CC [auth Y1], D [auth E2], DA [auth H1], DB [auth S3], DC [auth 2B], E [auth E3], EA [auth H2], EB [auth T1], EC [auth 3B], F [auth F1], FA [auth H3], FB [auth T2], FC [auth 1C], G [auth F2], GA [auth I1], GB [auth T3], GC [auth 2C], H [auth F3], HA [auth I2], HB [auth U1], HC [auth 3C], I [auth D1], IA [auth I3], IB [auth U2], IC [auth 1D], J [auth A2], JA [auth G1], JB [auth U3], JC [auth 2D], K [auth A3], KA [auth M2], KB [auth S1], KC [auth 3D], L [auth B1], LA [auth M3], LB [auth V2], LC [auth 1B], M [auth B2], MA [auth N1], MB [auth V3], MC [auth ZD], N [auth B3], NA [auth N2], NB [auth W1], NC [auth YE], O [auth C1], OA [auth N3], OB [auth W2], OC [auth ZE], P [auth C2], PA [auth O1], PB [auth W3], PC [auth 1E], Q [auth C3], QA [auth O2], QB [auth X1], QC [auth YF], R [auth A1], RA [auth O3], RB [auth X2], RC [auth ZF], S [auth J2], SA [auth M1], SB [auth X3], SC [auth 1F], T [auth J3], TA [auth P2], TB [auth V1], TC [auth YD], U [auth K1], UA [auth P3], UB [auth Y2], UC [auth 2E], V [auth K2], VA [auth Q1], VB [auth Y3], VC [auth 3E], W [auth K3], WA [auth Q2], WB [auth Z1], WC [auth 2F], X [auth L1], XA [auth Q3], XB [auth Z2], XC [auth 3F], Y [auth L2], YA [auth R1], YB [auth Z3], Z [auth L3], ZA [auth R2], ZB [auth 1A]	Myeloid differentiation primary response protein MyD88	protein binding binding signaling receptor binding Toll-like receptor binding catalytic activity, acting on a protein catalytic activity, acting on a nucleic acid histone chaperone activity protein carrier activity ATP-dependent activity ATP-dependent activity, acting on DNA ATP-dependent chromatin remodeler activity catalytic activity, acting on DNA ATP-dependent histone chaperone activity catalytic activity protein binding binding signaling receptor binding Toll-like receptor binding catalytic activity, acting on a protein catalytic activity, acting on a nucleic acid histone chaperone activity protein carrier activity ATP-dependent activity ATP-dependent activity, acting on DNA ATP-dependent chromatin remodeler activity catalytic activity, acting on DNA ATP-dependent histone chaperone activity catalytic activity molecular carrier activity Toll binding interleukin-1 receptor binding cytokine receptor binding growth factor receptor binding TIR domain binding protein domain specific binding tumor necrosis factor receptor superfamily binding death receptor binding molecular adaptor activity identical protein binding protein-macromolecule adaptor activity signaling adaptor activity	cellular response to stimulus regulation of defense response positive regulation of response to biotic stimulus regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of cellular process pattern recognition receptor signaling pathway response to stimulus regulation of response to external stimulus toll-like receptor signaling pathway signaling positive regulation of biological process response to biotic stimulus cell communication positive regulation of response to stimulus cellular response to stimulus regulation of defense response positive regulation of response to biotic stimulus regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of cellular process pattern recognition receptor signaling pathway response to stimulus regulation of response to external stimulus toll-like receptor signaling pathway signaling positive regulation of biological process response to biotic stimulus cell communication positive regulation of response to stimulus immune response-activating signaling pathway positive regulation of response to external stimulus immune response-regulating signaling pathway positive regulation of immune response regulation of response to stress response to stress innate immune response regulation of immune system process response to external biotic stimulus signal transduction positive regulation of immune system process innate immune response-activating signaling pathway MyD88-dependent toll-like receptor signaling pathway regulation of biological process positive regulation of innate immune response defense response immune response response to other organism regulation of innate immune response biological regulation defense response to symbiont response to external stimulus regulation of response to stimulus immune system process defense response to other organism positive regulation of defense response activation of innate immune response regulation of immune response cellular process activation of immune response cellular response to low-density lipoprotein particle stimulus cellular response to oxidised low-density lipoprotein particle stimulus response to endogenous stimulus response to chemical response to lipoprotein particle cellular response to lipoprotein particle stimulus localization import into cell transport phagocytosis endocytosis establishment of localization vesicle-mediated transport regulation of biosynthetic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process metabolic process positive regulation of macromolecule metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of cellular process cell surface receptor signaling pathway interleukin-33-mediated signaling pathway response to cytokine cytokine-mediated signaling pathway response to peptide cellular response to cytokine stimulus apoptotic process cell death programmed cell death Toll signaling pathway defense response to bacterium response to bacterium multicellular organismal process interleukin-1 production regulation of interleukin-1 beta production positive regulation of interleukin-1 beta production regulation of cytokine production cytokine production regulation of multicellular organismal process positive regulation of interleukin-1 production regulation of interleukin-1 production interleukin-1 beta production positive regulation of multicellular organismal process positive regulation of cytokine production positive regulation of interleukin-8 production interleukin-8 production regulation of interleukin-8 production immune response-regulating cell surface receptor signaling pathway cell surface toll-like receptor signaling pathway immune response-activating cell surface receptor signaling pathway toll-like receptor 5 signaling pathway innate immune response activating cell surface receptor signaling pathway cell surface pattern recognition receptor signaling pathway defense response to protozoan response to protozoan intracellular signal transduction cellular component biogenesis cellular component assembly inflammasome-mediated signaling pathway canonical inflammasome complex assembly NLRP3 inflammasome complex assembly inflammatory response cytoplasmic pattern recognition receptor signaling pathway intracellular receptor signaling pathway cellular component organization protein-containing complex assembly cellular component organization or biogenesis protein-containing complex organization JNK cascade intracellular signaling cassette MAPK cascade regulation of protein modification process regulation of catalytic activity regulation of protein phosphorylation regulation of transferase activity regulation of MAP kinase activity regulation of primary metabolic process phosphate-containing compound metabolic process protein metabolic process protein modification process protein phosphorylation phosphorylation regulation of protein metabolic process primary metabolic process regulation of protein kinase activity regulation of molecular function regulation of kinase activity regulation of protein serine/threonine kinase activity macromolecule modification regulation of phosphorylation cell population proliferation regulation of smooth muscle cell proliferation positive regulation of cell population proliferation smooth muscle cell proliferation positive regulation of smooth muscle cell proliferation regulation of cell population proliferation muscle cell proliferation negative regulation of biological process nucleobase-containing compound metabolic process post-transcriptional regulation of gene expression regulation of RNA metabolic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological quality RNA catabolic process mRNA stabilization mRNA catabolic process negative regulation of metabolic process nucleobase-containing compound catabolic process negative regulation of gene expression negative regulation of macromolecule biosynthetic process nucleic acid catabolic process negative regulation of RNA metabolic process catabolic process RNA metabolic process macromolecule catabolic process negative regulation of mRNA metabolic process 3'-UTR-mediated mRNA stabilization regulation of mRNA catabolic process negative regulation of cellular process negative regulation of macromolecule metabolic process negative regulation of catabolic process negative regulation of mRNA catabolic process negative regulation of RNA catabolic process regulation of catabolic process mRNA metabolic process nucleic acid metabolic process regulation of mRNA stability RNA stabilization negative regulation of biosynthetic process regulation of RNA stability regulation of mRNA metabolic process toll-like receptor 8 signaling pathway endolysosomal toll-like receptor signaling pathway defense response to virus response to virus positive regulation of type I interferon production type I interferon production regulation of type I interferon production positive regulation of DNA-templated transcription RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription transcription by RNA polymerase II regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process regulation of DNA-templated transcription interferon-mediated signaling pathway cellular response to type I interferon type I interferon-mediated signaling pathway response to type I interferon response to acid chemical response to amino acid positive regulation of cell communication positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction regulation of signal transduction regulation of intracellular signal transduction regulation of signaling positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of cell communication regulation of canonical NF-kappaB signal transduction positive regulation of signaling toll-like receptor 4 signaling pathway developmental process skin development animal organ development anatomical structure development interleukin-6 production positive regulation of interleukin-6 production regulation of interleukin-6 production response to interleukin-1 response to lipid cellular response to lipopolysaccharide response to oxygen-containing compound cellular response to molecule of bacterial origin response to lipopolysaccharide cellular response to oxygen-containing compound cellular response to biotic stimulus cellular response to chemical stimulus cellular response to lipid response to molecule of bacterial origin response to alcohol response to ethanol regulation of NLRP3 inflammasome complex assembly positive regulation of NLRP3 inflammasome complex assembly positive regulation of pattern recognition receptor signaling pathway positive regulation of inflammasome-mediated signaling pathway regulation of inflammasome-mediated signaling pathway regulation of pattern recognition receptor signaling pathway regulation of cellular component organization positive regulation of cellular component organization regulation of cytoplasmic pattern recognition receptor signaling pathway regulation of protein-containing complex assembly positive regulation of protein-containing complex assembly positive regulation of cellular component biogenesis regulation of cellular component biogenesis regulation of inflammatory response response to mechanical stimulus response to abiotic stimulus cellular response to mechanical stimulus cellular response to abiotic stimulus cellular response to external stimulus cellular response to environmental stimulus toll-like receptor TLR6:TLR2 signaling pathway positive regulation of interleukin-23 production interleukin-23 production regulation of interleukin-23 production interleukin-17 production regulation of interleukin-17 production positive regulation of interleukin-17 production cellular response to interleukin-1 interleukin-1-mediated signaling pathway regulation of cytokine production involved in inflammatory response production of molecular mediator involved in inflammatory response cytokine production involved in inflammatory response positive regulation of cytokine production involved in inflammatory response response to amine response to nitrogen compound defense response to Gram-positive bacterium	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery extrinsic component of plasma membrane cytoplasmic side of plasma membrane cytoplasmic side of membrane membrane plasma membrane extrinsic component of membrane extrinsic component of cytoplasmic side of plasma membrane side of membrane endosome membrane cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery extrinsic component of plasma membrane cytoplasmic side of plasma membrane cytoplasmic side of membrane membrane plasma membrane extrinsic component of membrane extrinsic component of cytoplasmic side of plasma membrane side of membrane endosome membrane membrane-bounded organelle endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle vesicle organelle membrane cell surface protein-containing complex nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], BA [auth G2], BB [auth P1], BC [auth 3A], C [auth E1], CA [auth G3], CB [auth S2], CC [auth Y1], D [auth E2], DA [auth H1], DB [auth S3], DC [auth 2B], E [auth E3], EA [auth H2], EB [auth T1], EC [auth 3B], F [auth F1], FA [auth H3], FB [auth T2], FC [auth 1C], G [auth F2], GA [auth I1], GB [auth T3], GC [auth 2C], H [auth F3], HA [auth I2], HB [auth U1], HC [auth 3C], I [auth D1], IA [auth I3], IB [auth U2], IC [auth 1D], J [auth A2], JA [auth G1], JB [auth U3], JC [auth 2D], K [auth A3], KA [auth M2], KB [auth S1], KC [auth 3D], L [auth B1], LA [auth M3], LB [auth V2], LC [auth 1B], M [auth B2], MA [auth N1], MB [auth V3], MC [auth ZD], N [auth B3], NA [auth N2], NB [auth W1], NC [auth YE], O [auth C1], OA [auth N3], OB [auth W2], OC [auth ZE], P [auth C2], PA [auth O1], PB [auth W3], PC [auth 1E], Q [auth C3], QA [auth O2], QB [auth X1], QC [auth YF], R [auth A1], RA [auth O3], RB [auth X2], RC [auth ZF], S [auth J2], SA [auth M1], SB [auth X3], SC [auth 1F], T [auth J3], TA [auth P2], TB [auth V1], TC [auth YD], U [auth K1], UA [auth P3], UB [auth Y2], UC [auth 2E], V [auth K2], VA [auth Q1], VB [auth Y3], VC [auth 3E], W [auth K3], WA [auth Q2], WB [auth Z1], WC [auth 2F], X [auth L1], XA [auth Q3], XB [auth Z2], XC [auth 3F], Y [auth L2], YA [auth R1], YB [auth Z3], Z [auth L3], ZA [auth R2], ZB [auth 1A]	IPR000488	Death domain	Domain
A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], BA [auth G2], BB [auth P1], BC [auth 3A], C [auth E1], CA [auth G3], CB [auth S2], CC [auth Y1], D [auth E2], DA [auth H1], DB [auth S3], DC [auth 2B], E [auth E3], EA [auth H2], EB [auth T1], EC [auth 3B], F [auth F1], FA [auth H3], FB [auth T2], FC [auth 1C], G [auth F2], GA [auth I1], GB [auth T3], GC [auth 2C], H [auth F3], HA [auth I2], HB [auth U1], HC [auth 3C], I [auth D1], IA [auth I3], IB [auth U2], IC [auth 1D], J [auth A2], JA [auth G1], JB [auth U3], JC [auth 2D], K [auth A3], KA [auth M2], KB [auth S1], KC [auth 3D], L [auth B1], LA [auth M3], LB [auth V2], LC [auth 1B], M [auth B2], MA [auth N1], MB [auth V3], MC [auth ZD], N [auth B3], NA [auth N2], NB [auth W1], NC [auth YE], O [auth C1], OA [auth N3], OB [auth W2], OC [auth ZE], P [auth C2], PA [auth O1], PB [auth W3], PC [auth 1E], Q [auth C3], QA [auth O2], QB [auth X1], QC [auth YF], R [auth A1], RA [auth O3], RB [auth X2], RC [auth ZF], S [auth J2], SA [auth M1], SB [auth X3], SC [auth 1F], T [auth J3], TA [auth P2], TB [auth V1], TC [auth YD], U [auth K1], UA [auth P3], UB [auth Y2], UC [auth 2E], V [auth K2], VA [auth Q1], VB [auth Y3], VC [auth 3E], W [auth K3], WA [auth Q2], WB [auth Z1], WC [auth 2F], X [auth L1], XA [auth Q3], XB [auth Z2], XC [auth 3F], Y [auth L2], YA [auth R1], YB [auth Z3], Z [auth L3], ZA [auth R2], ZB [auth 1A]	IPR035897	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Homologous Superfamily
A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], BA [auth G2], BB [auth P1], BC [auth 3A], C [auth E1], CA [auth G3], CB [auth S2], CC [auth Y1], D [auth E2], DA [auth H1], DB [auth S3], DC [auth 2B], E [auth E3], EA [auth H2], EB [auth T1], EC [auth 3B], F [auth F1], FA [auth H3], FB [auth T2], FC [auth 1C], G [auth F2], GA [auth I1], GB [auth T3], GC [auth 2C], H [auth F3], HA [auth I2], HB [auth U1], HC [auth 3C], I [auth D1], IA [auth I3], IB [auth U2], IC [auth 1D], J [auth A2], JA [auth G1], JB [auth U3], JC [auth 2D], K [auth A3], KA [auth M2], KB [auth S1], KC [auth 3D], L [auth B1], LA [auth M3], LB [auth V2], LC [auth 1B], M [auth B2], MA [auth N1], MB [auth V3], MC [auth ZD], N [auth B3], NA [auth N2], NB [auth W1], NC [auth YE], O [auth C1], OA [auth N3], OB [auth W2], OC [auth ZE], P [auth C2], PA [auth O1], PB [auth W3], PC [auth 1E], Q [auth C3], QA [auth O2], QB [auth X1], QC [auth YF], R [auth A1], RA [auth O3], RB [auth X2], RC [auth ZF], S [auth J2], SA [auth M1], SB [auth X3], SC [auth 1F], T [auth J3], TA [auth P2], TB [auth V1], TC [auth YD], U [auth K1], UA [auth P3], UB [auth Y2], UC [auth 2E], V [auth K2], VA [auth Q1], VB [auth Y3], VC [auth 3E], W [auth K3], WA [auth Q2], WB [auth Z1], WC [auth 2F], X [auth L1], XA [auth Q3], XB [auth Z2], XC [auth 3F], Y [auth L2], YA [auth R1], YB [auth Z3], Z [auth L3], ZA [auth R2], ZB [auth 1A]	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	Domain
A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], BA [auth G2], BB [auth P1], BC [auth 3A], C [auth E1], CA [auth G3], CB [auth S2], CC [auth Y1], D [auth E2], DA [auth H1], DB [auth S3], DC [auth 2B], E [auth E3], EA [auth H2], EB [auth T1], EC [auth 3B], F [auth F1], FA [auth H3], FB [auth T2], FC [auth 1C], G [auth F2], GA [auth I1], GB [auth T3], GC [auth 2C], H [auth F3], HA [auth I2], HB [auth U1], HC [auth 3C], I [auth D1], IA [auth I3], IB [auth U2], IC [auth 1D], J [auth A2], JA [auth G1], JB [auth U3], JC [auth 2D], K [auth A3], KA [auth M2], KB [auth S1], KC [auth 3D], L [auth B1], LA [auth M3], LB [auth V2], LC [auth 1B], M [auth B2], MA [auth N1], MB [auth V3], MC [auth ZD], N [auth B3], NA [auth N2], NB [auth W1], NC [auth YE], O [auth C1], OA [auth N3], OB [auth W2], OC [auth ZE], P [auth C2], PA [auth O1], PB [auth W3], PC [auth 1E], Q [auth C3], QA [auth O2], QB [auth X1], QC [auth YF], R [auth A1], RA [auth O3], RB [auth X2], RC [auth ZF], S [auth J2], SA [auth M1], SB [auth X3], SC [auth 1F], T [auth J3], TA [auth P2], TB [auth V1], TC [auth YD], U [auth K1], UA [auth P3], UB [auth Y2], UC [auth 2E], V [auth K2], VA [auth Q1], VB [auth Y3], VC [auth 3E], W [auth K3], WA [auth Q2], WB [auth Z1], WC [auth 2F], X [auth L1], XA [auth Q3], XB [auth Z2], XC [auth 3F], Y [auth L2], YA [auth R1], YB [auth Z3], Z [auth L3], ZA [auth R2], ZB [auth 1A]	IPR011029	Death-like domain superfamily	Homologous Superfamily
A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], BA [auth G2], BB [auth P1], BC [auth 3A], C [auth E1], CA [auth G3], CB [auth S2], CC [auth Y1], D [auth E2], DA [auth H1], DB [auth S3], DC [auth 2B], E [auth E3], EA [auth H2], EB [auth T1], EC [auth 3B], F [auth F1], FA [auth H3], FB [auth T2], FC [auth 1C], G [auth F2], GA [auth I1], GB [auth T3], GC [auth 2C], H [auth F3], HA [auth I2], HB [auth U1], HC [auth 3C], I [auth D1], IA [auth I3], IB [auth U2], IC [auth 1D], J [auth A2], JA [auth G1], JB [auth U3], JC [auth 2D], K [auth A3], KA [auth M2], KB [auth S1], KC [auth 3D], L [auth B1], LA [auth M3], LB [auth V2], LC [auth 1B], M [auth B2], MA [auth N1], MB [auth V3], MC [auth ZD], N [auth B3], NA [auth N2], NB [auth W1], NC [auth YE], O [auth C1], OA [auth N3], OB [auth W2], OC [auth ZE], P [auth C2], PA [auth O1], PB [auth W3], PC [auth 1E], Q [auth C3], QA [auth O2], QB [auth X1], QC [auth YF], R [auth A1], RA [auth O3], RB [auth X2], RC [auth ZF], S [auth J2], SA [auth M1], SB [auth X3], SC [auth 1F], T [auth J3], TA [auth P2], TB [auth V1], TC [auth YD], U [auth K1], UA [auth P3], UB [auth Y2], UC [auth 2E], V [auth K2], VA [auth Q1], VB [auth Y3], VC [auth 3E], W [auth K3], WA [auth Q2], WB [auth Z1], WC [auth 2F], X [auth L1], XA [auth Q3], XB [auth Z2], XC [auth 3F], Y [auth L2], YA [auth R1], YB [auth Z3], Z [auth L3], ZA [auth R2], ZB [auth 1A]	IPR034249	MyD88, death domain	Domain
A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], BA [auth G2], BB [auth P1], BC [auth 3A], C [auth E1], CA [auth G3], CB [auth S2], CC [auth Y1], D [auth E2], DA [auth H1], DB [auth S3], DC [auth 2B], E [auth E3], EA [auth H2], EB [auth T1], EC [auth 3B], F [auth F1], FA [auth H3], FB [auth T2], FC [auth 1C], G [auth F2], GA [auth I1], GB [auth T3], GC [auth 2C], H [auth F3], HA [auth I2], HB [auth U1], HC [auth 3C], I [auth D1], IA [auth I3], IB [auth U2], IC [auth 1D], J [auth A2], JA [auth G1], JB [auth U3], JC [auth 2D], K [auth A3], KA [auth M2], KB [auth S1], KC [auth 3D], L [auth B1], LA [auth M3], LB [auth V2], LC [auth 1B], M [auth B2], MA [auth N1], MB [auth V3], MC [auth ZD], N [auth B3], NA [auth N2], NB [auth W1], NC [auth YE], O [auth C1], OA [auth N3], OB [auth W2], OC [auth ZE], P [auth C2], PA [auth O1], PB [auth W3], PC [auth 1E], Q [auth C3], QA [auth O2], QB [auth X1], QC [auth YF], R [auth A1], RA [auth O3], RB [auth X2], RC [auth ZF], S [auth J2], SA [auth M1], SB [auth X3], SC [auth 1F], T [auth J3], TA [auth P2], TB [auth V1], TC [auth YD], U [auth K1], UA [auth P3], UB [auth Y2], UC [auth 2E], V [auth K2], VA [auth Q1], VB [auth Y3], VC [auth 3E], W [auth K3], WA [auth Q2], WB [auth Z1], WC [auth 2F], X [auth L1], XA [auth Q3], XB [auth Z2], XC [auth 3F], Y [auth L2], YA [auth R1], YB [auth Z3], Z [auth L3], ZA [auth R2], ZB [auth 1A]	IPR017281	Myeloid differentiation primary response protein MyD88	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], BA [auth G2], BB [auth P1], BC [auth 3A], C [auth E1], CA [auth G3], CB [auth S2], CC [auth Y1], D [auth E2], DA [auth H1], DB [auth S3], DC [auth 2B], E [auth E3], EA [auth H2], EB [auth T1], EC [auth 3B], F [auth F1], FA [auth H3], FB [auth T2], FC [auth 1C], G [auth F2], GA [auth I1], GB [auth T3], GC [auth 2C], H [auth F3], HA [auth I2], HB [auth U1], HC [auth 3C], I [auth D1], IA [auth I3], IB [auth U2], IC [auth 1D], J [auth A2], JA [auth G1], JB [auth U3], JC [auth 2D], K [auth A3], KA [auth M2], KB [auth S1], KC [auth 3D], L [auth B1], LA [auth M3], LB [auth V2], LC [auth 1B], M [auth B2], MA [auth N1], MB [auth V3], MC [auth ZD], N [auth B3], NA [auth N2], NB [auth W1], NC [auth YE], O [auth C1], OA [auth N3], OB [auth W2], OC [auth ZE], P [auth C2], PA [auth O1], PB [auth W3], PC [auth 1E], Q [auth C3], QA [auth O2], QB [auth X1], QC [auth YF], R [auth A1], RA [auth O3], RB [auth X2], RC [auth ZF], S [auth J2], SA [auth M1], SB [auth X3], SC [auth 1F], T [auth J3], TA [auth P2], TB [auth V1], TC [auth YD], U [auth K1], UA [auth P3], UB [auth Y2], UC [auth 2E], V [auth K2], VA [auth Q1], VB [auth Y3], VC [auth 3E], W [auth K3], WA [auth Q2], WB [auth Z1], WC [auth 2F], X [auth L1], XA [auth Q3], XB [auth Z2], XC [auth 3F], Y [auth L2], YA [auth R1], YB [auth Z3], Z [auth L3], ZA [auth R2], ZB [auth 1A]	: Q99836	diffuse large B-cell lymphoma pyogenic bacterial infections due to MyD88 deficiency Waldenstrom macroglobulinemia follicular lymphoma pneumonia hypertensive disorder lymphoplasmacytic lymphoma Neoplasm Invasiveness macroglobulinemia extrahepatic cholestasis hypereosinophilic syndrome ischemia reperfusion injury lung cancer lymphoma arthritic joint disease diffuse large B-cell lymphoma pyogenic bacterial infections due to MyD88 deficiency Waldenstrom macroglobulinemia follicular lymphoma pneumonia hypertensive disorder lymphoplasmacytic lymphoma Neoplasm Invasiveness macroglobulinemia extrahepatic cholestasis hypereosinophilic syndrome ischemia reperfusion injury lung cancer lymphoma arthritic joint disease cancer congenital anemia macroglobulinemia, Waldenstrom, 1 multiple sclerosis ovarian cancer glioblastoma psoriasis subependymal giant cell astrocytoma juvenile dermatomyositis lung carcinoma astrocytic tumor cutaneous lupus erythematosus malignant glioma pancreatic intraductal papillary-mucinous neoplasm pneumonitis hematologic disease lymphatic system disease autoimmune disease colitis malignant mesothelioma pilocytic astrocytoma primitive neuroectodermal tumor

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.