8W8M | pdb_00008w8m

Cryo-EM structure of helical filament of MyD88 TIR

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZB [auth 1A]		e8w8m1A1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
ZA [auth R2]		e8w8mR21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
Z [auth L3]		e8w8mL31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
YB [auth Z3]		e8w8mZ31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
YA [auth R1]		e8w8mR11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
Y [auth L2]		e8w8mL21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
XC [auth 3F]		e8w8m3F1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
XB [auth Z2]		e8w8mZ21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
XA [auth Q3]		e8w8mQ31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
X [auth L1]		e8w8mL11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
WC [auth 2F]		e8w8m2F1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
WB [auth Z1]		e8w8mZ11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
WA [auth Q2]		e8w8mQ21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
W [auth K3]		e8w8mK31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
VC [auth 3E]		e8w8m3E1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
VB [auth Y3]		e8w8mY31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
VA [auth Q1]		e8w8mQ11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
V [auth K2]		e8w8mK21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
UC [auth 2E]		e8w8m2E1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
UB [auth Y2]		e8w8mY21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
UA [auth P3]		e8w8mP31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
U [auth K1]		e8w8mK11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
TC [auth YD]		e8w8mYD1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
TB [auth V1]		e8w8mV11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
TA [auth P2]		e8w8mP21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
T [auth J3]		e8w8mJ31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
SC [auth 1F]		e8w8m1F1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
SB [auth X3]		e8w8mX31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
SA [auth M1]		e8w8mM11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
S [auth J2]		e8w8mJ21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
RC [auth ZF]		e8w8mZF1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
RB [auth X2]		e8w8mX21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
RA [auth O3]		e8w8mO31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
R [auth A1]		e8w8mA11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
QC [auth YF]		e8w8mYF1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
QB [auth X1]		e8w8mX11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
QA [auth O2]		e8w8mO21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
Q [auth C3]		e8w8mC31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
PC [auth 1E]		e8w8m1E1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
PB [auth W3]		e8w8mW31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
PA [auth O1]		e8w8mO11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
P [auth C2]		e8w8mC21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
OC [auth ZE]		e8w8mZE1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
OB [auth W2]		e8w8mW21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
OA [auth N3]		e8w8mN31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
O [auth C1]		e8w8mC11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
NC [auth YE]		e8w8mYE1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
NB [auth W1]		e8w8mW11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
NA [auth N2]		e8w8mN21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
N [auth B3]		e8w8mB31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
MC [auth ZD]		e8w8mZD1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
MB [auth V3]		e8w8mV31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
MA [auth N1]		e8w8mN11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
M [auth B2]		e8w8mB21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
LC [auth 1B]		e8w8m1B1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
LB [auth V2]		e8w8mV21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
LA [auth M3]		e8w8mM31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
L [auth B1]		e8w8mB11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
KC [auth 3D]		e8w8m3D1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
KB [auth S1]		e8w8mS11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
KA [auth M2]		e8w8mM21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
K [auth A3]		e8w8mA31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
JC [auth 2D]		e8w8m2D1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
JB [auth U3]		e8w8mU31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
JA [auth G1]		e8w8mG11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
J [auth A2]		e8w8mA21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
IC [auth 1D]		e8w8m1D1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
IB [auth U2]		e8w8mU21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
IA [auth I3]		e8w8mI31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
I [auth D1]		e8w8mD11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
HC [auth 3C]		e8w8m3C1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
HB [auth U1]		e8w8mU11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
HA [auth I2]		e8w8mI21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
H [auth F3]		e8w8mF31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
GC [auth 2C]		e8w8m2C1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
GB [auth T3]		e8w8mT31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
GA [auth I1]		e8w8mI11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
G [auth F2]		e8w8mF21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
FC [auth 1C]		e8w8m1C1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
FB [auth T2]		e8w8mT21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
FA [auth H3]		e8w8mH31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
F [auth F1]		e8w8mF11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
EC [auth 3B]		e8w8m3B1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
EB [auth T1]		e8w8mT11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
EA [auth H2]		e8w8mH21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
E [auth E3]		e8w8mE31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
DC [auth 2B]		e8w8m2B1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
DB [auth S3]		e8w8mS31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
DA [auth H1]		e8w8mH11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
D [auth E2]		e8w8mE21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
CC [auth Y1]		e8w8mY11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
CB [auth S2]		e8w8mS21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
CA [auth G3]		e8w8mG31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
C [auth E1]		e8w8mE11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
BC [auth 3A]		e8w8m3A1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
BB [auth P1]		e8w8mP11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
BA [auth G2]		e8w8mG21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
B [auth D3]		e8w8mD31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
AC [auth 2A]		e8w8m2A1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
AB [auth R3]		e8w8mR31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
AA [auth J1]		e8w8mJ11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
A [auth D2]	Cytochrom_B559a	e8w8mD201	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Cytochrom_B559a	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], BA [auth G2], BB [auth P1], BC [auth 3A], C [auth E1], CA [auth G3], CB [auth S2], CC [auth Y1], D [auth E2], DA [auth H1], DB [auth S3], DC [auth 2B], E [auth E3], EA [auth H2], EB [auth T1], EC [auth 3B], F [auth F1], FA [auth H3], FB [auth T2], FC [auth 1C], G [auth F2], GA [auth I1], GB [auth T3], GC [auth 2C], H [auth F3], HA [auth I2], HB [auth U1], HC [auth 3C], I [auth D1], IA [auth I3], IB [auth U2], IC [auth 1D], J [auth A2], JA [auth G1], JB [auth U3], JC [auth 2D], K [auth A3], KA [auth M2], KB [auth S1], KC [auth 3D], L [auth B1], LA [auth M3], LB [auth V2], LC [auth 1B], M [auth B2], MA [auth N1], MB [auth V3], MC [auth ZD], N [auth B3], NA [auth N2], NB [auth W1], NC [auth YE], O [auth C1], OA [auth N3], OB [auth W2], OC [auth ZE], P [auth C2], PA [auth O1], PB [auth W3], PC [auth 1E], Q [auth C3], QA [auth O2], QB [auth X1], QC [auth YF], R [auth A1], RA [auth O3], RB [auth X2], RC [auth ZF], S [auth J2], SA [auth M1], SB [auth X3], SC [auth 1F], T [auth J3], TA [auth P2], TB [auth V1], TC [auth YD], U [auth K1], UA [auth P3], UB [auth Y2], UC [auth 2E], V [auth K2], VA [auth Q1], VB [auth Y3], VC [auth 3E], W [auth K3], WA [auth Q2], WB [auth Z1], WC [auth 2F], X [auth L1], XA [auth Q3], XB [auth Z2], XC [auth 3F], Y [auth L2], YA [auth R1], YB [auth Z3], Z [auth L3], ZA [auth R2], ZB [auth 1A]	PF13676	TIR domain (TIR_2)	TIR domain	This is a family of Toll-like receptors.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], BA [auth G2], BB [auth P1], BC [auth 3A], C [auth E1], CA [auth G3], CB [auth S2], CC [auth Y1], D [auth E2], DA [auth H1], DB [auth S3], DC [auth 2B], E [auth E3], EA [auth H2], EB [auth T1], EC [auth 3B], F [auth F1], FA [auth H3], FB [auth T2], FC [auth 1C], G [auth F2], GA [auth I1], GB [auth T3], GC [auth 2C], H [auth F3], HA [auth I2], HB [auth U1], HC [auth 3C], I [auth D1], IA [auth I3], IB [auth U2], IC [auth 1D], J [auth A2], JA [auth G1], JB [auth U3], JC [auth 2D], K [auth A3], KA [auth M2], KB [auth S1], KC [auth 3D], L [auth B1], LA [auth M3], LB [auth V2], LC [auth 1B], M [auth B2], MA [auth N1], MB [auth V3], MC [auth ZD], N [auth B3], NA [auth N2], NB [auth W1], NC [auth YE], O [auth C1], OA [auth N3], OB [auth W2], OC [auth ZE], P [auth C2], PA [auth O1], PB [auth W3], PC [auth 1E], Q [auth C3], QA [auth O2], QB [auth X1], QC [auth YF], R [auth A1], RA [auth O3], RB [auth X2], RC [auth ZF], S [auth J2], SA [auth M1], SB [auth X3], SC [auth 1F], T [auth J3], TA [auth P2], TB [auth V1], TC [auth YD], U [auth K1], UA [auth P3], UB [auth Y2], UC [auth 2E], V [auth K2], VA [auth Q1], VB [auth Y3], VC [auth 3E], W [auth K3], WA [auth Q2], WB [auth Z1], WC [auth 2F], X [auth L1], XA [auth Q3], XB [auth Z2], XC [auth 3F], Y [auth L2], YA [auth R1], YB [auth Z3], Z [auth L3], ZA [auth R2], ZB [auth 1A]	Myeloid differentiation primary response protein MyD88	protein binding binding signaling receptor binding Toll-like receptor binding catalytic activity, acting on a protein catalytic activity, acting on a nucleic acid histone chaperone activity protein carrier activity ATP-dependent activity ATP-dependent activity, acting on DNA ATP-dependent chromatin remodeler activity catalytic activity, acting on DNA ATP-dependent histone chaperone activity catalytic activity protein binding binding signaling receptor binding Toll-like receptor binding catalytic activity, acting on a protein catalytic activity, acting on a nucleic acid histone chaperone activity protein carrier activity ATP-dependent activity ATP-dependent activity, acting on DNA ATP-dependent chromatin remodeler activity catalytic activity, acting on DNA ATP-dependent histone chaperone activity catalytic activity molecular carrier activity Toll binding interleukin-1 receptor binding cytokine receptor binding growth factor receptor binding TIR domain binding protein domain specific binding tumor necrosis factor receptor superfamily binding death receptor binding molecular adaptor activity identical protein binding protein-macromolecule adaptor activity signaling adaptor activity	cellular response to stimulus regulation of defense response positive regulation of response to biotic stimulus regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of cellular process pattern recognition receptor signaling pathway response to stimulus regulation of response to external stimulus toll-like receptor signaling pathway signaling positive regulation of biological process response to biotic stimulus cell communication positive regulation of response to stimulus cellular response to stimulus regulation of defense response positive regulation of response to biotic stimulus regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of cellular process pattern recognition receptor signaling pathway response to stimulus regulation of response to external stimulus toll-like receptor signaling pathway signaling positive regulation of biological process response to biotic stimulus cell communication positive regulation of response to stimulus immune response-activating signaling pathway positive regulation of response to external stimulus immune response-regulating signaling pathway positive regulation of immune response regulation of response to stress response to stress innate immune response regulation of immune system process response to external biotic stimulus signal transduction positive regulation of immune system process innate immune response-activating signaling pathway MyD88-dependent toll-like receptor signaling pathway regulation of biological process positive regulation of innate immune response defense response immune response response to other organism regulation of innate immune response biological regulation defense response to symbiont response to external stimulus regulation of response to stimulus immune system process defense response to other organism positive regulation of defense response activation of innate immune response regulation of immune response cellular process activation of immune response cellular response to low-density lipoprotein particle stimulus cellular response to oxidised low-density lipoprotein particle stimulus response to endogenous stimulus response to chemical response to lipoprotein particle cellular response to lipoprotein particle stimulus localization import into cell transport phagocytosis endocytosis establishment of localization vesicle-mediated transport regulation of biosynthetic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process metabolic process positive regulation of macromolecule metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of cellular process cell surface receptor signaling pathway interleukin-33-mediated signaling pathway response to cytokine cytokine-mediated signaling pathway response to peptide cellular response to cytokine stimulus apoptotic process cell death programmed cell death Toll signaling pathway defense response to bacterium response to bacterium multicellular organismal process interleukin-1 production regulation of interleukin-1 beta production positive regulation of interleukin-1 beta production regulation of cytokine production cytokine production regulation of multicellular organismal process positive regulation of interleukin-1 production regulation of interleukin-1 production interleukin-1 beta production positive regulation of multicellular organismal process positive regulation of cytokine production positive regulation of interleukin-8 production interleukin-8 production regulation of interleukin-8 production immune response-regulating cell surface receptor signaling pathway cell surface toll-like receptor signaling pathway immune response-activating cell surface receptor signaling pathway toll-like receptor 5 signaling pathway innate immune response activating cell surface receptor signaling pathway cell surface pattern recognition receptor signaling pathway defense response to protozoan response to protozoan intracellular signal transduction cellular component biogenesis cellular component assembly inflammasome-mediated signaling pathway canonical inflammasome complex assembly NLRP3 inflammasome complex assembly inflammatory response cytoplasmic pattern recognition receptor signaling pathway intracellular receptor signaling pathway cellular component organization protein-containing complex assembly cellular component organization or biogenesis protein-containing complex organization JNK cascade intracellular signaling cassette MAPK cascade regulation of protein modification process regulation of catalytic activity regulation of protein phosphorylation regulation of transferase activity regulation of MAP kinase activity regulation of primary metabolic process phosphate-containing compound metabolic process protein metabolic process protein modification process protein phosphorylation phosphorylation regulation of protein metabolic process primary metabolic process regulation of protein kinase activity regulation of molecular function regulation of kinase activity regulation of protein serine/threonine kinase activity macromolecule modification regulation of phosphorylation cell population proliferation regulation of smooth muscle cell proliferation positive regulation of cell population proliferation smooth muscle cell proliferation positive regulation of smooth muscle cell proliferation regulation of cell population proliferation muscle cell proliferation negative regulation of biological process nucleobase-containing compound metabolic process post-transcriptional regulation of gene expression regulation of RNA metabolic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological quality RNA catabolic process mRNA stabilization mRNA catabolic process negative regulation of metabolic process nucleobase-containing compound catabolic process negative regulation of gene expression negative regulation of macromolecule biosynthetic process nucleic acid catabolic process negative regulation of RNA metabolic process catabolic process RNA metabolic process macromolecule catabolic process negative regulation of mRNA metabolic process 3'-UTR-mediated mRNA stabilization regulation of mRNA catabolic process negative regulation of cellular process negative regulation of macromolecule metabolic process negative regulation of catabolic process negative regulation of mRNA catabolic process negative regulation of RNA catabolic process regulation of catabolic process mRNA metabolic process nucleic acid metabolic process regulation of mRNA stability RNA stabilization negative regulation of biosynthetic process regulation of RNA stability regulation of mRNA metabolic process toll-like receptor 8 signaling pathway endolysosomal toll-like receptor signaling pathway defense response to virus response to virus positive regulation of type I interferon production type I interferon production regulation of type I interferon production positive regulation of DNA-templated transcription RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription transcription by RNA polymerase II regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process regulation of DNA-templated transcription interferon-mediated signaling pathway cellular response to type I interferon type I interferon-mediated signaling pathway response to type I interferon response to acid chemical response to amino acid positive regulation of cell communication positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction regulation of signal transduction regulation of intracellular signal transduction regulation of signaling positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of cell communication regulation of canonical NF-kappaB signal transduction positive regulation of signaling toll-like receptor 4 signaling pathway developmental process skin development animal organ development anatomical structure development animal gross anatomical part developmental process interleukin-6 production positive regulation of interleukin-6 production regulation of interleukin-6 production response to interleukin-1 response to lipid cellular response to lipopolysaccharide response to oxygen-containing compound cellular response to molecule of bacterial origin response to lipopolysaccharide cellular response to oxygen-containing compound cellular response to biotic stimulus cellular response to chemical stimulus cellular response to lipid response to molecule of bacterial origin response to alcohol response to ethanol regulation of NLRP3 inflammasome complex assembly positive regulation of NLRP3 inflammasome complex assembly positive regulation of pattern recognition receptor signaling pathway positive regulation of inflammasome-mediated signaling pathway regulation of inflammasome-mediated signaling pathway regulation of pattern recognition receptor signaling pathway regulation of cellular component organization positive regulation of cellular component organization regulation of cytoplasmic pattern recognition receptor signaling pathway regulation of protein-containing complex assembly positive regulation of protein-containing complex assembly positive regulation of cellular component biogenesis regulation of cellular component biogenesis regulation of inflammatory response response to mechanical stimulus response to abiotic stimulus cellular response to mechanical stimulus cellular response to abiotic stimulus cellular response to external stimulus cellular response to environmental stimulus toll-like receptor TLR6:TLR2 signaling pathway positive regulation of interleukin-23 production interleukin-23 production regulation of interleukin-23 production interleukin-17 production regulation of interleukin-17 production positive regulation of interleukin-17 production cellular response to interleukin-1 interleukin-1-mediated signaling pathway regulation of cytokine production involved in inflammatory response production of molecular mediator involved in inflammatory response cytokine production involved in inflammatory response positive regulation of cytokine production involved in inflammatory response response to amine response to nitrogen compound defense response to Gram-positive bacterium	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery extrinsic component of plasma membrane cytoplasmic side of plasma membrane cytoplasmic side of membrane membrane plasma membrane extrinsic component of membrane extrinsic component of cytoplasmic side of plasma membrane side of membrane endosome membrane cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery extrinsic component of plasma membrane cytoplasmic side of plasma membrane cytoplasmic side of membrane membrane plasma membrane extrinsic component of membrane extrinsic component of cytoplasmic side of plasma membrane side of membrane endosome membrane membrane-bounded organelle endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle vesicle organelle membrane cell surface protein-containing complex nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], BA [auth G2], BB [auth P1], BC [auth 3A], C [auth E1], CA [auth G3], CB [auth S2], CC [auth Y1], D [auth E2], DA [auth H1], DB [auth S3], DC [auth 2B], E [auth E3], EA [auth H2], EB [auth T1], EC [auth 3B], F [auth F1], FA [auth H3], FB [auth T2], FC [auth 1C], G [auth F2], GA [auth I1], GB [auth T3], GC [auth 2C], H [auth F3], HA [auth I2], HB [auth U1], HC [auth 3C], I [auth D1], IA [auth I3], IB [auth U2], IC [auth 1D], J [auth A2], JA [auth G1], JB [auth U3], JC [auth 2D], K [auth A3], KA [auth M2], KB [auth S1], KC [auth 3D], L [auth B1], LA [auth M3], LB [auth V2], LC [auth 1B], M [auth B2], MA [auth N1], MB [auth V3], MC [auth ZD], N [auth B3], NA [auth N2], NB [auth W1], NC [auth YE], O [auth C1], OA [auth N3], OB [auth W2], OC [auth ZE], P [auth C2], PA [auth O1], PB [auth W3], PC [auth 1E], Q [auth C3], QA [auth O2], QB [auth X1], QC [auth YF], R [auth A1], RA [auth O3], RB [auth X2], RC [auth ZF], S [auth J2], SA [auth M1], SB [auth X3], SC [auth 1F], T [auth J3], TA [auth P2], TB [auth V1], TC [auth YD], U [auth K1], UA [auth P3], UB [auth Y2], UC [auth 2E], V [auth K2], VA [auth Q1], VB [auth Y3], VC [auth 3E], W [auth K3], WA [auth Q2], WB [auth Z1], WC [auth 2F], X [auth L1], XA [auth Q3], XB [auth Z2], XC [auth 3F], Y [auth L2], YA [auth R1], YB [auth Z3], Z [auth L3], ZA [auth R2], ZB [auth 1A]	IPR000488	Death domain	Domain
A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], BA [auth G2], BB [auth P1], BC [auth 3A], C [auth E1], CA [auth G3], CB [auth S2], CC [auth Y1], D [auth E2], DA [auth H1], DB [auth S3], DC [auth 2B], E [auth E3], EA [auth H2], EB [auth T1], EC [auth 3B], F [auth F1], FA [auth H3], FB [auth T2], FC [auth 1C], G [auth F2], GA [auth I1], GB [auth T3], GC [auth 2C], H [auth F3], HA [auth I2], HB [auth U1], HC [auth 3C], I [auth D1], IA [auth I3], IB [auth U2], IC [auth 1D], J [auth A2], JA [auth G1], JB [auth U3], JC [auth 2D], K [auth A3], KA [auth M2], KB [auth S1], KC [auth 3D], L [auth B1], LA [auth M3], LB [auth V2], LC [auth 1B], M [auth B2], MA [auth N1], MB [auth V3], MC [auth ZD], N [auth B3], NA [auth N2], NB [auth W1], NC [auth YE], O [auth C1], OA [auth N3], OB [auth W2], OC [auth ZE], P [auth C2], PA [auth O1], PB [auth W3], PC [auth 1E], Q [auth C3], QA [auth O2], QB [auth X1], QC [auth YF], R [auth A1], RA [auth O3], RB [auth X2], RC [auth ZF], S [auth J2], SA [auth M1], SB [auth X3], SC [auth 1F], T [auth J3], TA [auth P2], TB [auth V1], TC [auth YD], U [auth K1], UA [auth P3], UB [auth Y2], UC [auth 2E], V [auth K2], VA [auth Q1], VB [auth Y3], VC [auth 3E], W [auth K3], WA [auth Q2], WB [auth Z1], WC [auth 2F], X [auth L1], XA [auth Q3], XB [auth Z2], XC [auth 3F], Y [auth L2], YA [auth R1], YB [auth Z3], Z [auth L3], ZA [auth R2], ZB [auth 1A]	IPR035897	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Homologous Superfamily
A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], BA [auth G2], BB [auth P1], BC [auth 3A], C [auth E1], CA [auth G3], CB [auth S2], CC [auth Y1], D [auth E2], DA [auth H1], DB [auth S3], DC [auth 2B], E [auth E3], EA [auth H2], EB [auth T1], EC [auth 3B], F [auth F1], FA [auth H3], FB [auth T2], FC [auth 1C], G [auth F2], GA [auth I1], GB [auth T3], GC [auth 2C], H [auth F3], HA [auth I2], HB [auth U1], HC [auth 3C], I [auth D1], IA [auth I3], IB [auth U2], IC [auth 1D], J [auth A2], JA [auth G1], JB [auth U3], JC [auth 2D], K [auth A3], KA [auth M2], KB [auth S1], KC [auth 3D], L [auth B1], LA [auth M3], LB [auth V2], LC [auth 1B], M [auth B2], MA [auth N1], MB [auth V3], MC [auth ZD], N [auth B3], NA [auth N2], NB [auth W1], NC [auth YE], O [auth C1], OA [auth N3], OB [auth W2], OC [auth ZE], P [auth C2], PA [auth O1], PB [auth W3], PC [auth 1E], Q [auth C3], QA [auth O2], QB [auth X1], QC [auth YF], R [auth A1], RA [auth O3], RB [auth X2], RC [auth ZF], S [auth J2], SA [auth M1], SB [auth X3], SC [auth 1F], T [auth J3], TA [auth P2], TB [auth V1], TC [auth YD], U [auth K1], UA [auth P3], UB [auth Y2], UC [auth 2E], V [auth K2], VA [auth Q1], VB [auth Y3], VC [auth 3E], W [auth K3], WA [auth Q2], WB [auth Z1], WC [auth 2F], X [auth L1], XA [auth Q3], XB [auth Z2], XC [auth 3F], Y [auth L2], YA [auth R1], YB [auth Z3], Z [auth L3], ZA [auth R2], ZB [auth 1A]	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	Domain
A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], BA [auth G2], BB [auth P1], BC [auth 3A], C [auth E1], CA [auth G3], CB [auth S2], CC [auth Y1], D [auth E2], DA [auth H1], DB [auth S3], DC [auth 2B], E [auth E3], EA [auth H2], EB [auth T1], EC [auth 3B], F [auth F1], FA [auth H3], FB [auth T2], FC [auth 1C], G [auth F2], GA [auth I1], GB [auth T3], GC [auth 2C], H [auth F3], HA [auth I2], HB [auth U1], HC [auth 3C], I [auth D1], IA [auth I3], IB [auth U2], IC [auth 1D], J [auth A2], JA [auth G1], JB [auth U3], JC [auth 2D], K [auth A3], KA [auth M2], KB [auth S1], KC [auth 3D], L [auth B1], LA [auth M3], LB [auth V2], LC [auth 1B], M [auth B2], MA [auth N1], MB [auth V3], MC [auth ZD], N [auth B3], NA [auth N2], NB [auth W1], NC [auth YE], O [auth C1], OA [auth N3], OB [auth W2], OC [auth ZE], P [auth C2], PA [auth O1], PB [auth W3], PC [auth 1E], Q [auth C3], QA [auth O2], QB [auth X1], QC [auth YF], R [auth A1], RA [auth O3], RB [auth X2], RC [auth ZF], S [auth J2], SA [auth M1], SB [auth X3], SC [auth 1F], T [auth J3], TA [auth P2], TB [auth V1], TC [auth YD], U [auth K1], UA [auth P3], UB [auth Y2], UC [auth 2E], V [auth K2], VA [auth Q1], VB [auth Y3], VC [auth 3E], W [auth K3], WA [auth Q2], WB [auth Z1], WC [auth 2F], X [auth L1], XA [auth Q3], XB [auth Z2], XC [auth 3F], Y [auth L2], YA [auth R1], YB [auth Z3], Z [auth L3], ZA [auth R2], ZB [auth 1A]	IPR011029	Death-like domain superfamily	Homologous Superfamily
A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], BA [auth G2], BB [auth P1], BC [auth 3A], C [auth E1], CA [auth G3], CB [auth S2], CC [auth Y1], D [auth E2], DA [auth H1], DB [auth S3], DC [auth 2B], E [auth E3], EA [auth H2], EB [auth T1], EC [auth 3B], F [auth F1], FA [auth H3], FB [auth T2], FC [auth 1C], G [auth F2], GA [auth I1], GB [auth T3], GC [auth 2C], H [auth F3], HA [auth I2], HB [auth U1], HC [auth 3C], I [auth D1], IA [auth I3], IB [auth U2], IC [auth 1D], J [auth A2], JA [auth G1], JB [auth U3], JC [auth 2D], K [auth A3], KA [auth M2], KB [auth S1], KC [auth 3D], L [auth B1], LA [auth M3], LB [auth V2], LC [auth 1B], M [auth B2], MA [auth N1], MB [auth V3], MC [auth ZD], N [auth B3], NA [auth N2], NB [auth W1], NC [auth YE], O [auth C1], OA [auth N3], OB [auth W2], OC [auth ZE], P [auth C2], PA [auth O1], PB [auth W3], PC [auth 1E], Q [auth C3], QA [auth O2], QB [auth X1], QC [auth YF], R [auth A1], RA [auth O3], RB [auth X2], RC [auth ZF], S [auth J2], SA [auth M1], SB [auth X3], SC [auth 1F], T [auth J3], TA [auth P2], TB [auth V1], TC [auth YD], U [auth K1], UA [auth P3], UB [auth Y2], UC [auth 2E], V [auth K2], VA [auth Q1], VB [auth Y3], VC [auth 3E], W [auth K3], WA [auth Q2], WB [auth Z1], WC [auth 2F], X [auth L1], XA [auth Q3], XB [auth Z2], XC [auth 3F], Y [auth L2], YA [auth R1], YB [auth Z3], Z [auth L3], ZA [auth R2], ZB [auth 1A]	IPR034249	MyD88, death domain	Domain
A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], BA [auth G2], BB [auth P1], BC [auth 3A], C [auth E1], CA [auth G3], CB [auth S2], CC [auth Y1], D [auth E2], DA [auth H1], DB [auth S3], DC [auth 2B], E [auth E3], EA [auth H2], EB [auth T1], EC [auth 3B], F [auth F1], FA [auth H3], FB [auth T2], FC [auth 1C], G [auth F2], GA [auth I1], GB [auth T3], GC [auth 2C], H [auth F3], HA [auth I2], HB [auth U1], HC [auth 3C], I [auth D1], IA [auth I3], IB [auth U2], IC [auth 1D], J [auth A2], JA [auth G1], JB [auth U3], JC [auth 2D], K [auth A3], KA [auth M2], KB [auth S1], KC [auth 3D], L [auth B1], LA [auth M3], LB [auth V2], LC [auth 1B], M [auth B2], MA [auth N1], MB [auth V3], MC [auth ZD], N [auth B3], NA [auth N2], NB [auth W1], NC [auth YE], O [auth C1], OA [auth N3], OB [auth W2], OC [auth ZE], P [auth C2], PA [auth O1], PB [auth W3], PC [auth 1E], Q [auth C3], QA [auth O2], QB [auth X1], QC [auth YF], R [auth A1], RA [auth O3], RB [auth X2], RC [auth ZF], S [auth J2], SA [auth M1], SB [auth X3], SC [auth 1F], T [auth J3], TA [auth P2], TB [auth V1], TC [auth YD], U [auth K1], UA [auth P3], UB [auth Y2], UC [auth 2E], V [auth K2], VA [auth Q1], VB [auth Y3], VC [auth 3E], W [auth K3], WA [auth Q2], WB [auth Z1], WC [auth 2F], X [auth L1], XA [auth Q3], XB [auth Z2], XC [auth 3F], Y [auth L2], YA [auth R1], YB [auth Z3], Z [auth L3], ZA [auth R2], ZB [auth 1A]	IPR017281	Myeloid differentiation primary response protein MyD88	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], A [auth D2], AA [auth J1], AB [auth R3], AC [auth 2A], B [auth D3], BA [auth G2], BB [auth P1], BC [auth 3A], C [auth E1], CA [auth G3], CB [auth S2], CC [auth Y1], D [auth E2], DA [auth H1], DB [auth S3], DC [auth 2B], E [auth E3], EA [auth H2], EB [auth T1], EC [auth 3B], F [auth F1], FA [auth H3], FB [auth T2], FC [auth 1C], G [auth F2], GA [auth I1], GB [auth T3], GC [auth 2C], H [auth F3], HA [auth I2], HB [auth U1], HC [auth 3C], I [auth D1], IA [auth I3], IB [auth U2], IC [auth 1D], J [auth A2], JA [auth G1], JB [auth U3], JC [auth 2D], K [auth A3], KA [auth M2], KB [auth S1], KC [auth 3D], L [auth B1], LA [auth M3], LB [auth V2], LC [auth 1B], M [auth B2], MA [auth N1], MB [auth V3], MC [auth ZD], N [auth B3], NA [auth N2], NB [auth W1], NC [auth YE], O [auth C1], OA [auth N3], OB [auth W2], OC [auth ZE], P [auth C2], PA [auth O1], PB [auth W3], PC [auth 1E], Q [auth C3], QA [auth O2], QB [auth X1], QC [auth YF], R [auth A1], RA [auth O3], RB [auth X2], RC [auth ZF], S [auth J2], SA [auth M1], SB [auth X3], SC [auth 1F], T [auth J3], TA [auth P2], TB [auth V1], TC [auth YD], U [auth K1], UA [auth P3], UB [auth Y2], UC [auth 2E], V [auth K2], VA [auth Q1], VB [auth Y3], VC [auth 3E], W [auth K3], WA [auth Q2], WB [auth Z1], WC [auth 2F], X [auth L1], XA [auth Q3], XB [auth Z2], XC [auth 3F], Y [auth L2], YA [auth R1], YB [auth Z3], Z [auth L3], ZA [auth R2], ZB [auth 1A]	: Q99836	diffuse large B-cell lymphoma pyogenic bacterial infections due to MyD88 deficiency Waldenstrom macroglobulinemia follicular lymphoma pneumonia hypertensive disorder lymphoplasmacytic lymphoma Neoplasm Invasiveness macroglobulinemia extrahepatic cholestasis hypereosinophilic syndrome ischemia reperfusion injury lung cancer lymphoma arthritic joint disease diffuse large B-cell lymphoma pyogenic bacterial infections due to MyD88 deficiency Waldenstrom macroglobulinemia follicular lymphoma pneumonia hypertensive disorder lymphoplasmacytic lymphoma Neoplasm Invasiveness macroglobulinemia extrahepatic cholestasis hypereosinophilic syndrome ischemia reperfusion injury lung cancer lymphoma arthritic joint disease cancer congenital anemia macroglobulinemia, Waldenstrom, 1 multiple sclerosis ovarian cancer glioblastoma psoriasis subependymal giant cell astrocytoma juvenile dermatomyositis lung carcinoma astrocytic tumor cutaneous lupus erythematosus malignant glioma pancreatic intraductal papillary-mucinous neoplasm pneumonitis hematologic disease lymphatic system disease autoimmune disease colitis malignant mesothelioma pilocytic astrocytoma primitive neuroectodermal tumor

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.