Annotations: 8XKS

The cryo-EM structure of Orf2971-FtsHi motor complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I		e8xksI01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F:	ECOD (v294.2)
G	WD40	e8xksG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
F		e8xksF01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F:	ECOD (v294.2)
B		e8xksB01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F:	ECOD (v294.2)
R		e8xksR01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F:	ECOD (v294.2)
A		e8xksA01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F:	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
F, G	PF17862	AAA+ lid domain (AAA_lid_3)	AAA+ lid domain	This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.	Domain
F, G	PF00004	ATPase family associated with various cellular activities (AAA) (AAA)	ATPase family associated with various cellular activities (AAA)	AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].	Domain
F, G	PF01434	Peptidase family M41 (Peptidase_M41)	Peptidase family M41		Domain
D	PF00004	ATPase family associated with various cellular activities (AAA) (AAA)	ATPase family associated with various cellular activities (AAA)	AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].	Domain
R	PF00550	Phosphopantetheine attachment site (PP-binding)	Phosphopantetheine attachment site	A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes memb ...	A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of Swiss:P19828 has the attachment serine replaced by an alanine.	Domain
Q	PF03747	ADP-ribosylglycohydrolase (ADP_ribosyl_GH)	ADP-ribosylglycohydrolase	This family includes enzymes that ADP-ribosylations, for example ADP-ribosylarginine hydrolase EC:3.2.2.19 cleaves ADP-ribose-L-arginine [1]. The family also includes dinitrogenase reductase activating glycohydrolase [2]. Most surprisingly the family ...	This family includes enzymes that ADP-ribosylations, for example ADP-ribosylarginine hydrolase EC:3.2.2.19 cleaves ADP-ribose-L-arginine [1]. The family also includes dinitrogenase reductase activating glycohydrolase [2]. Most surprisingly the family also includes jellyfish crystallins [2], these proteins appear to have lost the presumed active site residues.	Domain
P	PF05996	Ferredoxin-dependent bilin reductase (Fe_bilin_red)	Ferredoxin-dependent bilin reductase	This family consists of several different but closely related proteins which include phycocyanobilin:ferredoxin oxidoreductase EC:1.3.7.5 (PcyA), 15,16-dihydrobiliverdin:ferredoxin oxidoreductase EC:1.3.7.2 (PebA) and phycoerythrobilin:ferredoxin oxi ...	This family consists of several different but closely related proteins which include phycocyanobilin:ferredoxin oxidoreductase EC:1.3.7.5 (PcyA), 15,16-dihydrobiliverdin:ferredoxin oxidoreductase EC:1.3.7.2 (PebA) and phycoerythrobilin:ferredoxin oxidoreductase EC:1.3.7.3 (PebB). Phytobilins are linear tetrapyrrole precursors of the light-harvesting prosthetic groups of the phytochrome photoreceptors of plants and the phycobiliprotein photosynthetic antennae of cyanobacteria, red algae, and cryptomonads. It is known that that phytobilins are synthesised from heme via the intermediary of biliverdin IX alpha (BV), which is reduced subsequently by ferredoxin-dependent bilin reductases with different double-bond specificities [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
J	FaxL	lipid transmembrane transporter activity fatty acid transmembrane transporter activity transporter activity monocarboxylic acid transmembrane transporter activity carboxylic acid transmembrane transporter activity transmembrane transporter activity	organic acid transport localization monocarboxylic acid transport carboxylic acid transport fatty acid transport transport macromolecule localization lipid localization lipid transport establishment of localization	membrane-bounded organelle plastid membrane intracellular anatomical structure organelle inner membrane plastid membrane chloroplast envelope intracellular membrane-bounded organelle plastid inner membrane intracellular organelle organelle envelope cellular anatomical structure chloroplast membrane organelle membrane-bounded organelle plastid membrane intracellular anatomical structure organelle inner membrane plastid membrane chloroplast envelope intracellular membrane-bounded organelle plastid inner membrane intracellular organelle organelle envelope cellular anatomical structure chloroplast membrane organelle chloroplast inner membrane cytoplasm organelle membrane plastid envelope chloroplast
I	Tic22	-	localization establishment of protein localization protein transport transport macromolecule localization intracellular protein localization establishment of localization	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast
H	Flagellar associated protein	-	-	-
F, G	AAA+ ATPase domain-containing protein	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding peptidase activity catalytic activity, acting on a protein metalloendopeptidase activity hydrolase activity metallopeptidase activity catalytic activity endopeptidase activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity, acting on acid anhydrides ATP-dependent activity ATP-dependent peptidase activity	establishment of protein localization transport establishment of localization transmembrane transport localization establishment of protein localization to chloroplast protein localization to chloroplast establishment of protein localization to organelle protein transmembrane transport protein transport macromolecule localization protein localization to organelle protein import into chloroplast stroma cellular process establishment of protein localization transport establishment of localization transmembrane transport localization establishment of protein localization to chloroplast protein localization to chloroplast establishment of protein localization to organelle protein transmembrane transport protein transport macromolecule localization protein localization to organelle protein import into chloroplast stroma cellular process intracellular protein localization proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast
E	Uncharacterized 341.7 kDa protein in psbD-psbC intergenic region	pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast
D	AAA+ ATPase domain-containing protein	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity ATP-dependent peptidase activity peptidase activity catalytic activity, acting on a protein metalloendopeptidase activity metallopeptidase activity endopeptidase activity	establishment of protein localization transport establishment of localization transmembrane transport localization establishment of protein localization to chloroplast protein localization to chloroplast establishment of protein localization to organelle protein transmembrane transport protein transport macromolecule localization protein localization to organelle protein import into chloroplast stroma cellular process establishment of protein localization transport establishment of localization transmembrane transport localization establishment of protein localization to chloroplast protein localization to chloroplast establishment of protein localization to organelle protein transmembrane transport protein transport macromolecule localization protein localization to organelle protein import into chloroplast stroma cellular process intracellular protein localization proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast
C	4Fe-4S ferredoxin-type domain-containing protein	cation binding ion binding binding metal ion binding small molecule binding	-	-
B	Fhl2	-	-	-
T	Moc31	-	-	-
S	Moc13	-	-	-
R	Acyl carrier protein	phosphopantetheine-dependent carrier activity prosthetic group binding binding acyl carrier activity molecular carrier activity ACP phosphopantetheine attachment site binding	-	-
Q	ADP-ribosylglycohydrolase	hydrolase activity, acting on glycosyl bonds hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity poly(ADP-ribose) glycohydrolase activity catalytic activity	-	-
P	PcyA1	cation binding transition metal ion binding ion binding binding metal ion binding cobalt ion binding small molecule binding oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor oxidoreductase activity oxidoreductase activity, acting on the CH-CH group of donors catalytic activity	phytochromobilin biosynthetic process tetrapyrrole metabolic process oxoacid metabolic process small molecule biosynthetic process dicarboxylic acid metabolic process carboxylic acid metabolic process carboxylic acid biosynthetic process tetrapyrrole biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process dicarboxylic acid biosynthetic process	-
O	Moc45	-	-	-
N	Moc34	-	-	-
M	Moc29	-	-	-
L	Moc25	-	-	-
K	Fatty acid desaturase domain-containing protein	oxidoreductase activity catalytic activity	-	-
A	Ctap1	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity ATP-dependent peptidase activity peptidase activity catalytic activity, acting on a protein metalloendopeptidase activity metallopeptidase activity endopeptidase activity	establishment of protein localization transport establishment of localization transmembrane transport localization establishment of protein localization to chloroplast protein localization to chloroplast establishment of protein localization to organelle protein transmembrane transport protein transport macromolecule localization protein localization to organelle protein import into chloroplast stroma cellular process establishment of protein localization transport establishment of localization transmembrane transport localization establishment of protein localization to chloroplast protein localization to chloroplast establishment of protein localization to organelle protein transmembrane transport protein transport macromolecule localization protein localization to organelle protein import into chloroplast stroma cellular process intracellular protein localization proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I	IPR007378	Tic22-like	Family
F, G	IPR000642	Peptidase M41	Domain
F, G	IPR037219	Peptidase M41-like	Homologous Superfamily
F, G	IPR041569	AAA ATPase, AAA+ lid domain	Domain
F, G	IPR003960	ATPase, AAA-type, conserved site	Conserved Site
F, G	IPR003593	AAA+ ATPase domain	Domain
F, G	IPR003959	ATPase, AAA-type, core	Domain
F, G	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
E	IPR050168	AAA ATPase domain-containing protein	Family
E	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
D	IPR037219	Peptidase M41-like	Homologous Superfamily
D	IPR003960	ATPase, AAA-type, conserved site	Conserved Site
D	IPR003593	AAA+ ATPase domain	Domain
D	IPR003959	ATPase, AAA-type, core	Domain
D	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
R	IPR009081	Phosphopantetheine binding ACP domain	Domain
R	IPR044813	Acyl carrier protein, chloroplastic	Family
R	IPR036736	ACP-like superfamily	Homologous Superfamily
R	IPR003231	Acyl carrier protein	Family
Q	IPR050792	ADP-ribosylglycohydrolase-like	Family
Q	IPR036705	ADP-ribosylation/Crystallin J1 superfamily	Homologous Superfamily
Q	IPR005502	ADP-ribosylation/Crystallin J1	Family
P	IPR009249	Ferredoxin-dependent bilin reductase	Family
K	IPR012171	Fatty acid desaturase	Family
A	IPR000642	Peptidase M41	Domain
A	IPR037219	Peptidase M41-like	Homologous Superfamily
A	IPR003593	AAA+ ATPase domain	Domain
A	IPR003959	ATPase, AAA-type, core	Domain
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily