Annotations: 8XLL

Structure of the native 2-oxoglutarate dehydrogenase complex (OGDHC) in the adult cortex and hippocampus

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X [auth Y]	WD40	e8xllY1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
W [auth X]	WD40	e8xllX1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
V [auth W]	WD40	e8xllW1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
U [auth V]	WD40	e8xllV1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
T [auth U]	WD40	e8xllU1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
S [auth T]	WD40	e8xllT1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
R [auth S]	WD40	e8xllS1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
Q [auth R]	WD40	e8xllR1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
P	WD40	e8xllP1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
O	WD40	e8xllO1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
N	WD40	e8xllN1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
M	WD40	e8xllM1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
L	WD40	e8xllL1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
K	WD40	e8xllK1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
J	WD40	e8xllJ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
I	WD40	e8xllI1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
H	WD40	e8xllH1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
G	WD40	e8xllG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
F	WD40	e8xllF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
E	WD40	e8xllE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
D	WD40	e8xllD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
C	WD40	e8xllC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
B	WD40	e8xllB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
A		e8xllA01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F:	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q [auth R], R [auth S], S [auth T], T [auth U], U [auth V], V [auth W], W [auth X], X [auth Y]	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain) (2-oxoacid_dh)	2-oxoacid dehydrogenases acyltransferase (catalytic domain)	These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q [auth R], R [auth S], S [auth T], T [auth U], U [auth V], V [auth W], W [auth X], X [auth Y]	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial	S-succinyltransferase activity catalytic activity, acting on a protein acyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity dihydrolipoyllysine-residue succinyltransferase activity catalytic activity succinyltransferase activity protein binding binding heat shock protein binding protein-folding chaperone binding	aerobic respiration cellular respiration tricarboxylic acid cycle energy derivation by oxidation of organic compounds primary metabolic process metabolic process cellular process generation of precursor metabolites and energy 2-oxoglutarate metabolic process oxoacid metabolic process succinyl-CoA biosynthetic process 2-oxoglutarate decarboxylation to succinyl-CoA nucleobase-containing compound metabolic process acyl-CoA metabolic process aerobic respiration cellular respiration tricarboxylic acid cycle energy derivation by oxidation of organic compounds primary metabolic process metabolic process cellular process generation of precursor metabolites and energy 2-oxoglutarate metabolic process oxoacid metabolic process succinyl-CoA biosynthetic process 2-oxoglutarate decarboxylation to succinyl-CoA nucleobase-containing compound metabolic process acyl-CoA metabolic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process acyl-CoA biosynthetic process small molecule metabolic process sulfur compound metabolic process succinyl-CoA metabolic process phosphorus metabolic process nucleoside phosphate metabolic process dicarboxylic acid metabolic process carboxylic acid metabolic process nucleobase-containing compound biosynthetic process purine-containing compound metabolic process sulfur compound biosynthetic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process nucleoside phosphate biosynthetic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cytosol cell periphery sarcolemma plasma membrane membrane oxoadipate dehydrogenase complex membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cytosol cell periphery sarcolemma plasma membrane membrane oxoadipate dehydrogenase complex protein-containing complex catalytic complex oxidoreductase complex transferase complex alpha-ketoacid dehydrogenase complex nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen oxoglutarate dehydrogenase complex tricarboxylic acid cycle heteromeric enzyme complex mitochondrial matrix

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q [auth R], R [auth S], S [auth T], T [auth U], U [auth V], V [auth W], W [auth X], X [auth Y]	IPR001078	2-oxoacid dehydrogenase acyltransferase, catalytic domain	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q [auth R], R [auth S], S [auth T], T [auth U], U [auth V], V [auth W], W [auth X], X [auth Y]	IPR006255	Dihydrolipoamide succinyltransferase	Family
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q [auth R], R [auth S], S [auth T], T [auth U], U [auth V], V [auth W], W [auth X], X [auth Y]	IPR050537	2-oxoacid dehydrogenase	Family
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q [auth R], R [auth S], S [auth T], T [auth U], U [auth V], V [auth W], W [auth X], X [auth Y]	IPR023213	Chloramphenicol acetyltransferase-like domain superfamily	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q [auth R], R [auth S], S [auth T], T [auth U], U [auth V], V [auth W], W [auth X], X [auth Y]	IPR011053	Single hybrid motif	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q [auth R], R [auth S], S [auth T], T [auth U], U [auth V], V [auth W], W [auth X], X [auth Y]	IPR003016	2-oxo acid dehydrogenase, lipoyl-binding site	Binding Site
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q [auth R], R [auth S], S [auth T], T [auth U], U [auth V], V [auth W], W [auth X], X [auth Y]	IPR000089	Biotin/lipoyl attachment	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8XLL | pdb_00008xll

Structure of the native 2-oxoglutarate dehydrogenase complex (OGDHC) in the adult cortex and hippocampus

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage