Annotations: 8XOO

Cryo-EM structure of the ClpC1:ClpP1P2 degradation complex in Streptomyces hawaiiensis

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G	WD40	e8xooG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
F	WD40	e8xooF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
E	WD40	e8xooE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
D	WD40	e8xooD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
C	WD40	e8xooC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
B	WD40	e8xooB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
A	WD40	e8xooA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
N	WD40	e8xooN1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
M	WD40	e8xooM1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
L	WD40	e8xooL1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
K	WD40	e8xooK1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
J	WD40	e8xooJ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
I	WD40	e8xooI1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
H	WD40	e8xooH1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
T [auth S]	WD40	e8xooS1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
S [auth T]	WD40	e8xooT1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
R [auth O]	WD40	e8xooO1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
Q [auth P]	WD40	e8xooP1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
P [auth Q]	WD40	e8xooQ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
O [auth R]	WD40	e8xooR1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G	ATP-dependent Clp protease proteolytic subunit	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity ATP-dependent peptidase activity ATP-dependent activity ATPase binding protein binding binding enzyme binding	catabolic process metabolic process cellular process primary metabolic process protein catabolic process protein metabolic process macromolecule metabolic process protein quality control for misfolded or incompletely synthesized proteins macromolecule catabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm endopeptidase Clp complex protein-containing complex catalytic complex
H, I, J, K, L H, I, J, K, L, M, N	ATP-dependent Clp protease proteolytic subunit	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity ATP-dependent peptidase activity ATP-dependent activity ATPase binding protein binding binding enzyme binding	catabolic process metabolic process cellular process primary metabolic process protein catabolic process protein metabolic process macromolecule metabolic process protein quality control for misfolded or incompletely synthesized proteins macromolecule catabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm endopeptidase Clp complex protein-containing complex catalytic complex
O [auth R], P [auth Q], Q [auth P], R [auth O], S [auth T], O [auth R], P [auth Q], Q [auth P], R [auth O], S [auth T], T [auth S]	NDP-hexose 4-ketoreductase	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity	cellular response to stimulus cellular response to heat response to stimulus cellular response to stress response to stress response to heat response to abiotic stimulus cellular process response to temperature stimulus	cellular anatomical structure intracellular anatomical structure cytoplasm
U [auth X]	casein	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G	IPR001907	ATP-dependent Clp protease proteolytic subunit	Family
A, B, C, D, E A, B, C, D, E, F, G	IPR033135	ClpP, histidine active site	Active Site
A, B, C, D, E A, B, C, D, E, F, G	IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	Family
H, I, J, K, L H, I, J, K, L, M, N	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
H, I, J, K, L H, I, J, K, L, M, N	IPR001907	ATP-dependent Clp protease proteolytic subunit	Family
H, I, J, K, L H, I, J, K, L, M, N	IPR018215	ClpP, Ser active site	Active Site
H, I, J, K, L H, I, J, K, L, M, N	IPR033135	ClpP, histidine active site	Active Site
H, I, J, K, L H, I, J, K, L, M, N	IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	Family
O [auth R], P [auth Q], Q [auth P], R [auth O], S [auth T], O [auth R], P [auth Q], Q [auth P], R [auth O], S [auth T], T [auth S]	IPR001270	ClpA/B family	Family
O [auth R], P [auth Q], Q [auth P], R [auth O], S [auth T], O [auth R], P [auth Q], Q [auth P], R [auth O], S [auth T], T [auth S]	IPR018368	ClpA/B, conserved site 1	Conserved Site
O [auth R], P [auth Q], Q [auth P], R [auth O], S [auth T], O [auth R], P [auth Q], Q [auth P], R [auth O], S [auth T], T [auth S]	IPR041546	ClpA/ClpB, AAA lid domain	Domain
O [auth R], P [auth Q], Q [auth P], R [auth O], S [auth T], O [auth R], P [auth Q], Q [auth P], R [auth O], S [auth T], T [auth S]	IPR004176	Clp, repeat (R) N-terminal domain	Domain
O [auth R], P [auth Q], Q [auth P], R [auth O], S [auth T], O [auth R], P [auth Q], Q [auth P], R [auth O], S [auth T], T [auth S]	IPR050130	ATP-dependent Clp protease/Chaperone ClpA/ClpB	Family
O [auth R], P [auth Q], Q [auth P], R [auth O], S [auth T], O [auth R], P [auth Q], Q [auth P], R [auth O], S [auth T], T [auth S]	IPR003593	AAA+ ATPase domain	Domain
O [auth R], P [auth Q], Q [auth P], R [auth O], S [auth T], O [auth R], P [auth Q], Q [auth P], R [auth O], S [auth T], T [auth S]	IPR003959	ATPase, AAA-type, core	Domain
O [auth R], P [auth Q], Q [auth P], R [auth O], S [auth T], O [auth R], P [auth Q], Q [auth P], R [auth O], S [auth T], T [auth S]	IPR001943	UVR domain	Domain
O [auth R], P [auth Q], Q [auth P], R [auth O], S [auth T], O [auth R], P [auth Q], Q [auth P], R [auth O], S [auth T], T [auth S]	IPR019489	Clp ATPase, C-terminal	Domain
O [auth R], P [auth Q], Q [auth P], R [auth O], S [auth T], O [auth R], P [auth Q], Q [auth P], R [auth O], S [auth T], T [auth S]	IPR036628	Clp, N-terminal domain superfamily	Homologous Superfamily
O [auth R], P [auth Q], Q [auth P], R [auth O], S [auth T], O [auth R], P [auth Q], Q [auth P], R [auth O], S [auth T], T [auth S]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8XOO | pdb_00008xoo

Cryo-EM structure of the ClpC1:ClpP1P2 degradation complex in Streptomyces hawaiiensis

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage