Annotations: 8Y6Q

Structure of the Dark/Dronc complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
M [auth G]	WD40	e8y6qG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
L [auth F]	WD40	e8y6qF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
K [auth E]	WD40	e8y6qE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
J [auth D]	WD40	e8y6qD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
I [auth C]	WD40	e8y6qC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
H [auth B]	WD40	e8y6qB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
G [auth A]	WD40	e8y6qA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
F [auth N]	LRR_1, LRR_5, LRR_6, LRR_8	e8y6qN01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: LRR_1, LRR_5, LRR_6, LRR_8	ECOD (v294.2)
P [auth K]	WD40	e8y6qK1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
O [auth I]	WD40	e8y6qI1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
N [auth Q]	WD40	e8y6qQ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
E [auth O]	WD40	e8y6qO1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
D [auth M]	WD40	e8y6qM1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
C [auth L]	WD40	e8y6qL1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
B [auth J]	WD40	e8y6qJ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
A [auth H]	LRR_1, LRR_5, LRR_6, LRR_8	e8y6qH02	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: LRR_1, LRR_5, LRR_6, LRR_8	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth H], B [auth J], C [auth L], D [auth M], E [auth O], A [auth H], B [auth J], C [auth L], D [auth M], E [auth O], N [auth Q], O [auth I], P [auth K]	PF00931	NB-ARC domain (NB-ARC)	NB-ARC domain		Domain
A [auth H], B [auth J], C [auth L], D [auth M], E [auth O], A [auth H], B [auth J], C [auth L], D [auth M], E [auth O], N [auth Q], O [auth I], P [auth K]	PF22164	Dark, winged-helix domain (WHD_Dark)	Dark, winged-helix domain	This entry represents a WH-like present in a set of Dark (Drosophila Apaf-1-related killer) proteins in arthropods. Dark protein is part of the apoptosome complex and plays a key role in procaspases activation and apoptosis [1,2].	Domain
A [auth H], B [auth J], C [auth L], D [auth M], E [auth O], A [auth H], B [auth J], C [auth L], D [auth M], E [auth O], N [auth Q], O [auth I], P [auth K]	PF17908	APAF-1 helical domain (APAF1_C)	APAF-1 helical domain	This domain represents the C-terminal alpha helical domain of the apoptotic Apaf-1 protein.	Domain
A [auth H], B [auth J], C [auth L], D [auth M], E [auth O], A [auth H], B [auth J], C [auth L], D [auth M], E [auth O], N [auth Q], O [auth I], P [auth K]	PF22080	Dark, CARD domain (Dark_CARD)	Dark, CARD domain	This entry represents a caspase recruitment domain (CARD) present in a set of Dark (Drosophila Apaf-1-related killer) proteins in arthropods. Dark protein is part of the apoptosome complex and plays a key role in procaspases activation and apoptosis ...	This entry represents a caspase recruitment domain (CARD) present in a set of Dark (Drosophila Apaf-1-related killer) proteins in arthropods. Dark protein is part of the apoptosome complex and plays a key role in procaspases activation and apoptosis [1]. This N-terminal CARD in Dark belongs to the alpha-helical Death Domain superfamily and interacts with the N-terminal CARD of Dronc protein [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
F [auth N], G [auth A], H [auth B], I [auth C], J [auth D], F [auth N], G [auth A], H [auth B], I [auth C], J [auth D], K [auth E], L [auth F], M [auth G]	Caspase Dronc	cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein cysteine-type endopeptidase activity hydrolase activity catalytic activity endopeptidase activity identical protein binding protein binding binding protein homodimerization activity protein dimerization activity CARD domain binding protein domain specific binding	developmental process multicellular organism development multicellular organismal process anatomical structure development metamorphosis primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein autoprocessing biosynthetic process proteolysis protein processing metabolic process developmental process multicellular organism development multicellular organismal process anatomical structure development metamorphosis primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein autoprocessing biosynthetic process proteolysis protein processing metabolic process cellular process protein metabolic process macromolecule metabolic process central nervous system development nervous system development system development cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction regulation of programmed cell death positive regulation of apoptotic signaling pathway cell communication positive regulation of response to stimulus signal transduction positive regulation of cellular process regulation of biological process regulation of signaling positive regulation of programmed cell death regulation of apoptotic process biological regulation cell death positive regulation of apoptotic process apoptotic signaling pathway regulation of response to stimulus regulation of cell communication apoptotic process programmed cell death positive regulation of signaling regulation of apoptotic signaling pathway spermatid development spermatid differentiation sexual reproduction cellular developmental process spermatogenesis reproductive process cellularization cell development cellular process involved in reproduction in multicellular organism developmental process involved in reproduction gamete generation cell differentiation multicellular organismal reproductive process sperm individualization male gamete generation anatomical structure morphogenesis anatomical structure formation involved in morphogenesis germ cell development developmental maturation generation of neurons neurogenesis neuron differentiation neuron remodeling anatomical structure maturation neuron development neuron maturation cell maturation hemocyte differentiation hemopoiesis immune system process hemocyte development execution phase of apoptosis cell projection organization plasma membrane bounded cell projection morphogenesis neuron projection development cell morphogenesis cellular component organization cell projection morphogenesis neuron projection morphogenesis dendrite development cellular component organization or biogenesis plasma membrane bounded cell projection organization dendrite morphogenesis cell morphogenesis involved in neuron differentiation pigment metabolic process melanization defense response biological process involved in interspecies interaction between organisms immune response response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus melanin metabolic process secondary metabolic process defense response to other organism response to stress phenol-containing compound metabolic process innate immune response response to external biotic stimulus determination of adult lifespan negative regulation of cell population proliferation cell population proliferation regulation of cell population proliferation negative regulation of cellular process negative regulation of biological process programmed cell death involved in cell development programmed necrotic cell death head involution embryo development ending in birth or egg hatching embryonic morphogenesis embryo development embryonic development via the syncytial blastoderm ectopic germ cell programmed cell death chaeta development sensory organ development animal organ development eye development visual system development compound eye development sensory system development compound eye retinal cell programmed cell death eye morphogenesis compound eye morphogenesis animal organ morphogenesis sensory organ morphogenesis retinal cell programmed cell death oogenesis female gamete generation apoptotic process involved in development nurse cell apoptotic process zymogen activation salivary gland histolysis gland development salivary gland development instar larval or pupal development anatomical structure regression gland morphogenesis instar larval or pupal morphogenesis salivary gland morphogenesis post-embryonic animal morphogenesis post-embryonic development exocrine system development	cell periphery cellular anatomical structure plasma membrane membrane intracellular anatomical structure cytoplasm protein-containing complex apoptosome cytosol membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
A [auth H], B [auth J], C [auth L], D [auth M], E [auth O], A [auth H], B [auth J], C [auth L], D [auth M], E [auth O], N [auth Q], O [auth I], P [auth K]	Apaf-1 related killer DARK	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding ADP binding structural molecule activity CARD domain binding protein binding protein domain specific binding identical protein binding	oxoacid metabolic process sulfur amino acid metabolic process carbohydrate derivative metabolic process amino acid metabolic process L-methionine metabolic process nucleobase-containing compound metabolic process non-proteinogenic amino acid metabolic process nucleobase-containing small molecule metabolic process S-adenosylmethionine metabolic process small molecule metabolic process sulfur compound metabolic process purine ribonucleoside metabolic process homocysteine metabolic process L-methionine cycle oxoacid metabolic process sulfur amino acid metabolic process carbohydrate derivative metabolic process amino acid metabolic process L-methionine metabolic process nucleobase-containing compound metabolic process non-proteinogenic amino acid metabolic process nucleobase-containing small molecule metabolic process S-adenosylmethionine metabolic process small molecule metabolic process sulfur compound metabolic process purine ribonucleoside metabolic process homocysteine metabolic process L-methionine cycle modified amino acid metabolic process carboxylic acid metabolic process primary metabolic process nucleoside metabolic process L-amino acid metabolic process purine-containing compound metabolic process proteinogenic amino acid metabolic process metabolic process cellular process purine nucleoside metabolic process ribonucleoside metabolic process spermatid development multicellular organismal process spermatid differentiation sexual reproduction cellular developmental process spermatogenesis reproductive process cellularization cell development cellular process involved in reproduction in multicellular organism developmental process involved in reproduction gamete generation multicellular organism development cell differentiation anatomical structure development developmental process multicellular organismal reproductive process sperm individualization male gamete generation anatomical structure morphogenesis anatomical structure formation involved in morphogenesis germ cell development chemical homeostasis homeostatic process triglyceride homeostasis acylglycerol homeostasis lipid homeostasis apoptotic process cell death programmed cell death regulation of biological process positive regulation of programmed cell death regulation of cellular process regulation of developmental process positive regulation of apoptotic process involved in development regulation of apoptotic process biological regulation positive regulation of biological process regulation of programmed cell death regulation of apoptotic process involved in development positive regulation of apoptotic process positive regulation of developmental process apoptotic process involved in development positive regulation of cellular process cell projection organization plasma membrane bounded cell projection morphogenesis neuron projection development cell morphogenesis cellular component organization neurogenesis cell projection morphogenesis neuron differentiation neuron projection morphogenesis dendrite development cellular component organization or biogenesis system development plasma membrane bounded cell projection organization dendrite morphogenesis nervous system development cell morphogenesis involved in neuron differentiation generation of neurons neuron development pigment metabolic process melanization defense response biological process involved in interspecies interaction between organisms response to stimulus immune response response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus melanin metabolic process secondary metabolic process immune system process defense response to other organism response to stress phenol-containing compound metabolic process innate immune response response to external biotic stimulus central nervous system formation central nervous system development central nervous system morphogenesis autophagic cell death regulation of glial cell apoptotic process positive regulation of glial cell apoptotic process glial cell apoptotic process chaeta development sensory organ development animal organ development response to ionizing radiation response to radiation response to abiotic stimulus response to gamma radiation regulation of humoral immune response humoral immune response negative regulation of response to stimulus negative regulation of immune response negative regulation of humoral immune response negative regulation of biological process regulation of response to stimulus negative regulation of immune system process regulation of immune response regulation of immune system process compound eye retinal cell programmed cell death visual system development eye morphogenesis compound eye morphogenesis animal organ morphogenesis sensory system development eye development programmed cell death involved in cell development compound eye development sensory organ morphogenesis retinal cell programmed cell death cellular homeostasis neuron cellular homeostasis response to nutrient levels response to starvation salivary gland histolysis gland development salivary gland development instar larval or pupal development metamorphosis anatomical structure regression gland morphogenesis instar larval or pupal morphogenesis salivary gland morphogenesis post-embryonic animal morphogenesis post-embryonic development exocrine system development	protein-containing complex cellular anatomical structure intracellular anatomical structure apoptosome cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
F [auth N], G [auth A], H [auth B], I [auth C], J [auth D], F [auth N], G [auth A], H [auth B], I [auth C], J [auth D], K [auth E], L [auth F], M [auth G]	IPR001309	Peptidase C14, p20 domain	Domain
F [auth N], G [auth A], H [auth B], I [auth C], J [auth D], F [auth N], G [auth A], H [auth B], I [auth C], J [auth D], K [auth E], L [auth F], M [auth G]	IPR011600	Peptidase C14, caspase domain	Domain
F [auth N], G [auth A], H [auth B], I [auth C], J [auth D], F [auth N], G [auth A], H [auth B], I [auth C], J [auth D], K [auth E], L [auth F], M [auth G]	IPR015917	Peptidase C14A, caspase catalytic domain	Domain
F [auth N], G [auth A], H [auth B], I [auth C], J [auth D], F [auth N], G [auth A], H [auth B], I [auth C], J [auth D], K [auth E], L [auth F], M [auth G]	IPR011029	Death-like domain superfamily	Homologous Superfamily
F [auth N], G [auth A], H [auth B], I [auth C], J [auth D], F [auth N], G [auth A], H [auth B], I [auth C], J [auth D], K [auth E], L [auth F], M [auth G]	IPR029030	Caspase-like domain superfamily	Homologous Superfamily
F [auth N], G [auth A], H [auth B], I [auth C], J [auth D], F [auth N], G [auth A], H [auth B], I [auth C], J [auth D], K [auth E], L [auth F], M [auth G]	IPR033139	Peptidase family C14A, cysteine active site	Active Site
F [auth N], G [auth A], H [auth B], I [auth C], J [auth D], F [auth N], G [auth A], H [auth B], I [auth C], J [auth D], K [auth E], L [auth F], M [auth G]	IPR002138	Peptidase C14, caspase non-catalytic subunit p10	Domain
F [auth N], G [auth A], H [auth B], I [auth C], J [auth D], F [auth N], G [auth A], H [auth B], I [auth C], J [auth D], K [auth E], L [auth F], M [auth G]	IPR002398	Peptidase C14 family	Family
A [auth H], B [auth J], C [auth L], D [auth M], E [auth O], A [auth H], B [auth J], C [auth L], D [auth M], E [auth O], N [auth Q], O [auth I], P [auth K]	IPR054042	Dark, winged-helix domain	Domain
A [auth H], B [auth J], C [auth L], D [auth M], E [auth O], A [auth H], B [auth J], C [auth L], D [auth M], E [auth O], N [auth Q], O [auth I], P [auth K]	IPR041452	APAF-1 helical domain	Domain
A [auth H], B [auth J], C [auth L], D [auth M], E [auth O], A [auth H], B [auth J], C [auth L], D [auth M], E [auth O], N [auth Q], O [auth I], P [auth K]	IPR054304	Dark, CARD domain	Domain
A [auth H], B [auth J], C [auth L], D [auth M], E [auth O], A [auth H], B [auth J], C [auth L], D [auth M], E [auth O], N [auth Q], O [auth I], P [auth K]	IPR002182	NB-ARC	Domain
A [auth H], B [auth J], C [auth L], D [auth M], E [auth O], A [auth H], B [auth J], C [auth L], D [auth M], E [auth O], N [auth Q], O [auth I], P [auth K]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
A [auth H], B [auth J], C [auth L], D [auth M], E [auth O], A [auth H], B [auth J], C [auth L], D [auth M], E [auth O], N [auth Q], O [auth I], P [auth K]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A [auth H], B [auth J], C [auth L], D [auth M], E [auth O], A [auth H], B [auth J], C [auth L], D [auth M], E [auth O], N [auth Q], O [auth I], P [auth K]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A [auth H], B [auth J], C [auth L], D [auth M], E [auth O], A [auth H], B [auth J], C [auth L], D [auth M], E [auth O], N [auth Q], O [auth I], P [auth K]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A [auth H], B [auth J], C [auth L], D [auth M], E [auth O], A [auth H], B [auth J], C [auth L], D [auth M], E [auth O], N [auth Q], O [auth I], P [auth K]	IPR001680	WD40 repeat	Repeat

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8Y6Q | pdb_00008y6q

Structure of the Dark/Dronc complex

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage