Cryo-EM structure of human proteasome assembly intermediate preholo-1
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| Y [auth H] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8064074 | 3000131 | SCOP2B (2022-06-29) |
| H [auth V] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8064074 | 3000131 | SCOP2B (2022-06-29) |
| W [auth F] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8064054 | 3000131 | SCOP2B (2022-06-29) |
| F [auth T] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8064054 | 3000131 | SCOP2B (2022-06-29) |
| V [auth E] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8064060 | 3000131 | SCOP2B (2022-06-29) |
| E [auth S] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8064060 | 3000131 | SCOP2B (2022-06-29) |
| U [auth D] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8064022 | 3000131 | SCOP2B (2022-06-29) |
| D [auth R] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8064022 | 3000131 | SCOP2B (2022-06-29) |
| T [auth C] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8064004 | 3000131 | SCOP2B (2022-06-29) |
| C [auth Q] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8064004 | 3000131 | SCOP2B (2022-06-29) |
| S [auth B] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8064036 | 3000131 | SCOP2B (2022-06-29) |
| B [auth P] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8064036 | 3000131 | SCOP2B (2022-06-29) |
| N [auth b] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8079175 | 3000131 | SCOP2B (2022-06-29) |
| EA [auth N] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8079175 | 3000131 | SCOP2B (2022-06-29) |
| K [auth Y] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8079492 | 3000131 | SCOP2B (2022-06-29) |
| BA [auth K] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8079492 | 3000131 | SCOP2B (2022-06-29) |
| R [auth A] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8064014 | 3000131 | SCOP2B (2022-06-29) |
| A [auth O] | SCOP2B Superfamily | Class II glutamine amidotransferases | 8064014 | 3000131 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| Z [auth I] | e8yiyI1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: | ECOD (v295) | |
| I [auth W] | e8yiyW1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: | ECOD (v295) | |
| Y [auth H] | e8yiyH1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: | ECOD (v295) | |
| H [auth V] | e8yiyV1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: | ECOD (v295) | |
| X [auth G] | e8yiyG1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: | ECOD (v295) | |
| G [auth U] | e8yiyU1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: | ECOD (v295) | |
| W [auth F] | e8yiyF1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: | ECOD (v295) | |
| F [auth T] | e8yiyT1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: | ECOD (v295) | |
| V [auth E] | e8yiyE1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: | ECOD (v295) | |
| E [auth S] | e8yiyS1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: | ECOD (v295) | |
| U [auth D] | e8yiyD1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: | ECOD (v295) | |
| D [auth R] | e8yiyR1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: | ECOD (v295) | |
| T [auth C] | e8yiyC1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: | ECOD (v295) | |
| C [auth Q] | e8yiyQ1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: | ECOD (v295) | |
| S [auth B] | e8yiyB1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: | ECOD (v295) | |
| B [auth P] | e8yiyP1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: | ECOD (v295) | |
| N [auth b] | e8yiyb1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: | ECOD (v295) | |
| EA [auth N] | e8yiyN1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: | ECOD (v295) | |
| M [auth a] | e8yiya1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: | ECOD (v295) | |
| DA [auth M] | e8yiyM1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: | ECOD (v295) | |
| L [auth Z] | e8yiyZ1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: | ECOD (v295) | |
| CA [auth L] | e8yiyL1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: | ECOD (v295) | |
| K [auth Y] | e8yiyY1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: | ECOD (v295) | |
| BA [auth K] | e8yiyK1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: | ECOD (v295) | |
| J [auth X] | e8yiyX1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: | ECOD (v295) | |
| AA [auth J] | e8yiyJ1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: | ECOD (v295) | |
| R [auth A] | e8yiyA1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: | ECOD (v295) | |
| A [auth O] | e8yiyO1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: | ECOD (v295) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| H [auth V], Y [auth H] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
| H [auth V], Y [auth H] | PF12465 | Proteasome beta subunits C terminal (Pr_beta_C) | Proteasome beta subunits C terminal | - | Family |
| G [auth U], X [auth G] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
| G [auth U], X [auth G] | PF10584 | Proteasome subunit A N-terminal signature (Proteasome_A_N) | Proteasome subunit A N-terminal signature | - | Family |
| G [auth U], X [auth G] | PF09754 | PAC2 family (PAC2) | PAC2 family | - | Family |
| F [auth T], W [auth F] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
| F [auth T], W [auth F] | PF16094 | Proteasome assembly chaperone 4 (PAC1) | Proteasome assembly chaperone 4 | - | Family |
| F [auth T], W [auth F] | PF10584 | Proteasome subunit A N-terminal signature (Proteasome_A_N) | Proteasome subunit A N-terminal signature | - | Family |
| E [auth S], V [auth E] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
| E [auth S], V [auth E] | PF10584 | Proteasome subunit A N-terminal signature (Proteasome_A_N) | Proteasome subunit A N-terminal signature | - | Family |
| D [auth R], U [auth D] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
| D [auth R], U [auth D] | PF10584 | Proteasome subunit A N-terminal signature (Proteasome_A_N) | Proteasome subunit A N-terminal signature | - | Family |
| D [auth R], U [auth D] | PF09754 | PAC2 family (PAC2) | PAC2 family | - | Family |
| C [auth Q], T [auth C] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
| C [auth Q], T [auth C] | PF16094 | Proteasome assembly chaperone 4 (PAC1) | Proteasome assembly chaperone 4 | - | Family |
| C [auth Q], T [auth C] | PF10584 | Proteasome subunit A N-terminal signature (Proteasome_A_N) | Proteasome subunit A N-terminal signature | - | Family |
| B [auth P], S [auth B] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
| B [auth P], S [auth B] | PF10584 | Proteasome subunit A N-terminal signature (Proteasome_A_N) | Proteasome subunit A N-terminal signature | - | Family |
| DA [auth M], M [auth a] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
| CA [auth L], L [auth Z] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
| BA [auth K], K [auth Y] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
| AA [auth J], J [auth X] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
| A [auth O], R [auth A] | PF00227 | Proteasome subunit (Proteasome) | Proteasome subunit | The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ... | Domain |
| A [auth O], R [auth A] | PF10584 | Proteasome subunit A N-terminal signature (Proteasome_A_N) | Proteasome subunit A N-terminal signature | - | Family |














