Semliki Forest virus viron
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| P [auth Q] | SCOP2B Superfamily | Trypsin-like serine proteases | 8042286 | 3000114 | SCOP2B (2022-06-29) |
| O [auth P] | SCOP2B Superfamily | Trypsin-like serine proteases | 8042286 | 3000114 | SCOP2B (2022-06-29) |
| N [auth O] | SCOP2B Superfamily | Trypsin-like serine proteases | 8042286 | 3000114 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Trypsin-like serine proteases | 8042286 | 3000114 | SCOP2B (2022-06-29) |
| G [auth H] | SCOP2B Superfamily | Viral glycoprotein, central and dimerisation domains | 8037191 | 3000293 | SCOP2B (2022-06-29) |
| G [auth H] | SCOP2B Superfamily | E set domains | 8054997 | 3000070 | SCOP2B (2022-06-29) |
| F [auth G] | SCOP2B Superfamily | E set domains | 8054997 | 3000070 | SCOP2B (2022-06-29) |
| F [auth G] | SCOP2B Superfamily | Viral glycoprotein, central and dimerisation domains | 8037191 | 3000293 | SCOP2B (2022-06-29) |
| E [auth F] | SCOP2B Superfamily | E set domains | 8054997 | 3000070 | SCOP2B (2022-06-29) |
| E [auth F] | SCOP2B Superfamily | Viral glycoprotein, central and dimerisation domains | 8037191 | 3000293 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Viral glycoprotein, central and dimerisation domains | 8037191 | 3000293 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | E set domains | 8054997 | 3000070 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| S [auth T] | WD40 | e8yw0T1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| R | WD40 | e8yw0R1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| Q [auth E] | Lip_C | e8yw0E01 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: Lip_C | ECOD (v294.2) |
| P [auth Q] | WD40 | e8yw0Q1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| O [auth P] | WD40 | e8yw0P1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| N [auth O] | WD40 | e8yw0O1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| D | WD40 | e8yw0D1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| M [auth N] | WD40 | e8yw0N1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| L [auth M] | WD40 | e8yw0M1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| K [auth L] | WD40 | e8yw0L1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| C | WD40 | e8yw0C1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| J [auth K] | WD40 | e8yw0K1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| I [auth J] | WD40 | e8yw0J1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| H [auth I] | WD40 | e8yw0I1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| B | WD40 | e8yw0B1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| G [auth H] | WD40 | e8yw0H1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| F [auth G] | WD40 | e8yw0G1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| E [auth F] | WD40 | e8yw0F1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| A | WD40 | e8yw0A1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| Q [auth E], R, S [auth T] | PF00057 | Low-density lipoprotein receptor domain class A (Ldl_recept_a) | Low-density lipoprotein receptor domain class A | - | Repeat |
| D, N [auth O], O [auth P], P [auth Q] | PF00944 | Alphavirus core protein (Peptidase_S3) | Alphavirus core protein | Also known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane. | Domain |
| C, K [auth L], L [auth M], M [auth N] | PF01563 | Alphavirus E3 glycoprotein (Alpha_E3_glycop) | Alphavirus E3 glycoprotein | - | Family |
| B, H [auth I], I [auth J], J [auth K] | PF00943 | Alphavirus E2 glycoprotein (Alpha_E2_glycop) | Alphavirus E2 glycoprotein | - | Family |
| A, E [auth F], F [auth G], G [auth H] | PF01589 | Alphavirus E1 glycoprotein (Alpha_E1_glycop) | Alphavirus E1 glycoprotein | - | Family |














