8YYM | pdb_00008yym

Cryo-EM structure of cylindrical fiber of MyD88 TIR

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZC	WD40	e8yymZC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
ZB [auth TA]	WD40	e8yymTA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
ZA [auth MC]	WD40	e8yymMC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
Z [auth GA]	WD40	e8yymGA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
YC [auth ZB]	WD40	e8yymZB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
YB [auth T]	WD40	e8yymT1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
YA [auth MB]	WD40	e8yymMB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
Y [auth G]	WD40	e8yymG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
XC [auth ZA]	WD40	e8yymZA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
XB [auth SC]	WD40	e8yymSC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
XA [auth MA]	WD40	e8yymMA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
X [auth FC]	WD40	e8yymFC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
WC [auth Z]	WD40	e8yymZ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
WB [auth SB]	WD40	e8yymSB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
WA [auth M]	WD40	e8yymM1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
W [auth FB]	WD40	e8yymFB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
VC [auth YC]	WD40	e8yymYC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
VB [auth SA]	WD40	e8yymSA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
VA [auth LC]	WD40	e8yymLC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
V [auth FA]	WD40	e8yymFA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
UC [auth YB]	WD40	e8yymYB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
UB [auth S]	WD40	e8yymS1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
UA [auth LB]	WD40	e8yymLB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
U [auth F]	WD40	e8yymF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
TC [auth YA]	WD40	e8yymYA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
TB [auth RC]	WD40	e8yymRC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
TA [auth LA]	WD40	e8yymLA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
T [auth EC]	WD40	e8yymEC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
SC [auth Y]	WD40	e8yymY1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
SB [auth RB]	WD40	e8yymRB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
SA [auth L]	WD40	e8yymL1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
S [auth EB]	WD40	e8yymEB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
RC [auth XC]	WD40	e8yymXC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
RB [auth RA]	WD40	e8yymRA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
RA [auth KC]	WD40	e8yymKC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
R [auth EA]	WD40	e8yymEA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
QC [auth XB]	WD40	e8yymXB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
QB [auth R]	WD40	e8yymR1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
QA [auth KB]	WD40	e8yymKB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
Q [auth E]	WD40	e8yymE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
PC [auth XA]	WD40	e8yymXA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
PB [auth QC]	WD40	e8yymQC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
PA [auth KA]	WD40	e8yymKA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
P [auth DC]	WD40	e8yymDC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
OC [auth X]	WD40	e8yymX1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
OB [auth QB]	WD40	e8yymQB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
OA [auth K]	WD40	e8yymK1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
O [auth DB]	WD40	e8yymDB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
NC [auth WC]	WD40	e8yymWC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
NB [auth QA]	WD40	e8yymQA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
NA [auth JC]	WD40	e8yymJC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
N [auth DA]	WD40	e8yymDA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
MC [auth WB]	WD40	e8yymWB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
MB [auth Q]	WD40	e8yymQ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
MA [auth JB]	WD40	e8yymJB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
M [auth D]	WD40	e8yymD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
LC [auth WA]	WD40	e8yymWA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
LB [auth PC]	WD40	e8yymPC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
LA [auth JA]	WD40	e8yymJA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
L [auth CC]	WD40	e8yymCC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
KC [auth W]	WD40	e8yymW1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
KB [auth PB]	WD40	e8yymPB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
KA [auth J]	WD40	e8yymJ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
K [auth CB]	WD40	e8yymCB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
JC [auth VC]	WD40	e8yymVC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
JB [auth PA]	WD40	e8yymPA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
JA [auth IC]	WD40	e8yymIC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
J [auth CA]	WD40	e8yymCA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
IC [auth VB]	WD40	e8yymVB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
IB [auth P]	WD40	e8yymP1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
IA [auth IB]	WD40	e8yymIB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
I [auth C]	WD40	e8yymC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
HC [auth VA]	WD40	e8yymVA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
HB [auth OC]	WD40	e8yymOC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
HA [auth IA]	WD40	e8yymIA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
H [auth BC]	WD40	e8yymBC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
GC [auth V]	WD40	e8yymV1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
GB [auth OB]	WD40	e8yymOB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
GA [auth I]	WD40	e8yymI1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
G [auth BB]	WD40	e8yymBB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
FC [auth UC]	WD40	e8yymUC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
FB [auth OA]	WD40	e8yymOA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
FA [auth HC]	WD40	e8yymHC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
F [auth BA]	WD40	e8yymBA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
EC [auth UB]	WD40	e8yymUB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
EB [auth O]	WD40	e8yymO1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
EA [auth HB]	WD40	e8yymHB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
E [auth B]	WD40	e8yymB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
DC [auth UA]	WD40	e8yymUA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
DB [auth NC]	WD40	e8yymNC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
DA [auth HA]	WD40	e8yymHA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
D [auth AC]	WD40	e8yymAC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
CC [auth U]	WD40	e8yymU1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
CB [auth NB]	WD40	e8yymNB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
CA [auth H]	WD40	e8yymH1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
C [auth AB]	WD40	e8yymAB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
BC [auth TC]	WD40	e8yymTC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
BB [auth NA]	WD40	e8yymNA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
BA [auth GC]	WD40	e8yymGC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
B [auth AA]	WD40	e8yymAA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
AC [auth TB]	WD40	e8yymTB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
AB [auth N]	WD40	e8yymN1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
AA [auth GB]	WD40	e8yymGB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
A	WD40	e8yymA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth GB], AB [auth N], AC [auth TB], B [auth AA], A, AA [auth GB], AB [auth N], AC [auth TB], B [auth AA], BA [auth GC], BB [auth NA], BC [auth TC], C [auth AB], CA [auth H], CB [auth NB], CC [auth U], D [auth AC], DA [auth HA], DB [auth NC], DC [auth UA], E [auth B], EA [auth HB], EB [auth O], EC [auth UB], F [auth BA], FA [auth HC], FB [auth OA], FC [auth UC], G [auth BB], GA [auth I], GB [auth OB], GC [auth V], H [auth BC], HA [auth IA], HB [auth OC], HC [auth VA], I [auth C], IA [auth IB], IB [auth P], IC [auth VB], J [auth CA], JA [auth IC], JB [auth PA], JC [auth VC], K [auth CB], KA [auth J], KB [auth PB], KC [auth W], L [auth CC], LA [auth JA], LB [auth PC], LC [auth WA], M [auth D], MA [auth JB], MB [auth Q], MC [auth WB], N [auth DA], NA [auth JC], NB [auth QA], NC [auth WC], O [auth DB], OA [auth K], OB [auth QB], OC [auth X], P [auth DC], PA [auth KA], PB [auth QC], PC [auth XA], Q [auth E], QA [auth KB], QB [auth R], QC [auth XB], R [auth EA], RA [auth KC], RB [auth RA], RC [auth XC], S [auth EB], SA [auth L], SB [auth RB], SC [auth Y], T [auth EC], TA [auth LA], TB [auth RC], TC [auth YA], U [auth F], UA [auth LB], UB [auth S], UC [auth YB], V [auth FA], VA [auth LC], VB [auth SA], VC [auth YC], W [auth FB], WA [auth M], WB [auth SB], WC [auth Z], X [auth FC], XA [auth MA], XB [auth SC], XC [auth ZA], Y [auth G], YA [auth MB], YB [auth T], YC [auth ZB], Z [auth GA], ZA [auth MC], ZB [auth TA], ZC	PF13676	TIR domain (TIR_2)	TIR domain	This is a family of Toll-like receptors.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth GB], AB [auth N], AC [auth TB], B [auth AA], A, AA [auth GB], AB [auth N], AC [auth TB], B [auth AA], BA [auth GC], BB [auth NA], BC [auth TC], C [auth AB], CA [auth H], CB [auth NB], CC [auth U], D [auth AC], DA [auth HA], DB [auth NC], DC [auth UA], E [auth B], EA [auth HB], EB [auth O], EC [auth UB], F [auth BA], FA [auth HC], FB [auth OA], FC [auth UC], G [auth BB], GA [auth I], GB [auth OB], GC [auth V], H [auth BC], HA [auth IA], HB [auth OC], HC [auth VA], I [auth C], IA [auth IB], IB [auth P], IC [auth VB], J [auth CA], JA [auth IC], JB [auth PA], JC [auth VC], K [auth CB], KA [auth J], KB [auth PB], KC [auth W], L [auth CC], LA [auth JA], LB [auth PC], LC [auth WA], M [auth D], MA [auth JB], MB [auth Q], MC [auth WB], N [auth DA], NA [auth JC], NB [auth QA], NC [auth WC], O [auth DB], OA [auth K], OB [auth QB], OC [auth X], P [auth DC], PA [auth KA], PB [auth QC], PC [auth XA], Q [auth E], QA [auth KB], QB [auth R], QC [auth XB], R [auth EA], RA [auth KC], RB [auth RA], RC [auth XC], S [auth EB], SA [auth L], SB [auth RB], SC [auth Y], T [auth EC], TA [auth LA], TB [auth RC], TC [auth YA], U [auth F], UA [auth LB], UB [auth S], UC [auth YB], V [auth FA], VA [auth LC], VB [auth SA], VC [auth YC], W [auth FB], WA [auth M], WB [auth SB], WC [auth Z], X [auth FC], XA [auth MA], XB [auth SC], XC [auth ZA], Y [auth G], YA [auth MB], YB [auth T], YC [auth ZB], Z [auth GA], ZA [auth MC], ZB [auth TA], ZC	Myeloid differentiation primary response protein MyD88	protein binding binding signaling receptor binding Toll-like receptor binding catalytic activity, acting on a protein catalytic activity, acting on a nucleic acid histone chaperone activity protein carrier activity ATP-dependent activity ATP-dependent activity, acting on DNA ATP-dependent chromatin remodeler activity catalytic activity, acting on DNA ATP-dependent histone chaperone activity catalytic activity protein binding binding signaling receptor binding Toll-like receptor binding catalytic activity, acting on a protein catalytic activity, acting on a nucleic acid histone chaperone activity protein carrier activity ATP-dependent activity ATP-dependent activity, acting on DNA ATP-dependent chromatin remodeler activity catalytic activity, acting on DNA ATP-dependent histone chaperone activity catalytic activity molecular carrier activity Toll binding interleukin-1 receptor binding cytokine receptor binding growth factor receptor binding TIR domain binding protein domain specific binding tumor necrosis factor receptor superfamily binding death receptor binding molecular adaptor activity identical protein binding protein-macromolecule adaptor activity signaling adaptor activity	cellular response to stimulus regulation of defense response positive regulation of response to biotic stimulus regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of cellular process pattern recognition receptor signaling pathway response to stimulus regulation of response to external stimulus toll-like receptor signaling pathway signaling positive regulation of biological process response to biotic stimulus cell communication positive regulation of response to stimulus cellular response to stimulus regulation of defense response positive regulation of response to biotic stimulus regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of cellular process pattern recognition receptor signaling pathway response to stimulus regulation of response to external stimulus toll-like receptor signaling pathway signaling positive regulation of biological process response to biotic stimulus cell communication positive regulation of response to stimulus immune response-activating signaling pathway positive regulation of response to external stimulus immune response-regulating signaling pathway positive regulation of immune response regulation of response to stress response to stress innate immune response regulation of immune system process response to external biotic stimulus signal transduction positive regulation of immune system process innate immune response-activating signaling pathway MyD88-dependent toll-like receptor signaling pathway regulation of biological process positive regulation of innate immune response defense response immune response response to other organism regulation of innate immune response biological regulation defense response to symbiont response to external stimulus regulation of response to stimulus immune system process defense response to other organism positive regulation of defense response activation of innate immune response regulation of immune response cellular process activation of immune response cellular response to low-density lipoprotein particle stimulus cellular response to oxidised low-density lipoprotein particle stimulus response to endogenous stimulus response to chemical response to lipoprotein particle cellular response to lipoprotein particle stimulus localization import into cell transport phagocytosis endocytosis establishment of localization vesicle-mediated transport regulation of biosynthetic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process metabolic process positive regulation of macromolecule metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of cellular process cell surface receptor signaling pathway interleukin-33-mediated signaling pathway response to cytokine cytokine-mediated signaling pathway response to peptide cellular response to cytokine stimulus apoptotic process cell death programmed cell death Toll signaling pathway defense response to bacterium response to bacterium multicellular organismal process interleukin-1 production regulation of interleukin-1 beta production positive regulation of interleukin-1 beta production regulation of cytokine production cytokine production regulation of multicellular organismal process positive regulation of interleukin-1 production regulation of interleukin-1 production interleukin-1 beta production positive regulation of multicellular organismal process positive regulation of cytokine production positive regulation of interleukin-8 production interleukin-8 production regulation of interleukin-8 production immune response-regulating cell surface receptor signaling pathway cell surface toll-like receptor signaling pathway immune response-activating cell surface receptor signaling pathway toll-like receptor 5 signaling pathway innate immune response activating cell surface receptor signaling pathway cell surface pattern recognition receptor signaling pathway defense response to protozoan response to protozoan intracellular signal transduction cellular component biogenesis cellular component assembly inflammasome-mediated signaling pathway canonical inflammasome complex assembly NLRP3 inflammasome complex assembly inflammatory response cytoplasmic pattern recognition receptor signaling pathway intracellular receptor signaling pathway cellular component organization protein-containing complex assembly cellular component organization or biogenesis protein-containing complex organization JNK cascade intracellular signaling cassette MAPK cascade regulation of protein modification process regulation of catalytic activity regulation of protein phosphorylation regulation of transferase activity regulation of MAP kinase activity regulation of primary metabolic process phosphate-containing compound metabolic process protein metabolic process protein modification process protein phosphorylation phosphorylation regulation of protein metabolic process primary metabolic process regulation of protein kinase activity regulation of molecular function regulation of kinase activity regulation of protein serine/threonine kinase activity macromolecule modification regulation of phosphorylation cell population proliferation regulation of smooth muscle cell proliferation positive regulation of cell population proliferation smooth muscle cell proliferation positive regulation of smooth muscle cell proliferation regulation of cell population proliferation muscle cell proliferation negative regulation of biological process nucleobase-containing compound metabolic process post-transcriptional regulation of gene expression regulation of RNA metabolic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological quality RNA catabolic process mRNA stabilization mRNA catabolic process negative regulation of metabolic process nucleobase-containing compound catabolic process negative regulation of gene expression negative regulation of macromolecule biosynthetic process nucleic acid catabolic process negative regulation of RNA metabolic process catabolic process RNA metabolic process macromolecule catabolic process negative regulation of mRNA metabolic process 3'-UTR-mediated mRNA stabilization regulation of mRNA catabolic process negative regulation of cellular process negative regulation of macromolecule metabolic process negative regulation of catabolic process negative regulation of mRNA catabolic process negative regulation of RNA catabolic process regulation of catabolic process mRNA metabolic process nucleic acid metabolic process regulation of mRNA stability RNA stabilization negative regulation of biosynthetic process regulation of RNA stability regulation of mRNA metabolic process toll-like receptor 8 signaling pathway endolysosomal toll-like receptor signaling pathway defense response to virus response to virus positive regulation of type I interferon production type I interferon production regulation of type I interferon production positive regulation of DNA-templated transcription RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription transcription by RNA polymerase II regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process regulation of DNA-templated transcription interferon-mediated signaling pathway cellular response to type I interferon type I interferon-mediated signaling pathway response to type I interferon response to acid chemical response to amino acid positive regulation of cell communication positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction regulation of signal transduction regulation of intracellular signal transduction regulation of signaling positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of cell communication regulation of canonical NF-kappaB signal transduction positive regulation of signaling toll-like receptor 4 signaling pathway developmental process skin development animal organ development anatomical structure development interleukin-6 production positive regulation of interleukin-6 production regulation of interleukin-6 production response to interleukin-1 response to lipid cellular response to lipopolysaccharide response to oxygen-containing compound cellular response to molecule of bacterial origin response to lipopolysaccharide cellular response to oxygen-containing compound cellular response to biotic stimulus cellular response to chemical stimulus cellular response to lipid response to molecule of bacterial origin response to alcohol response to ethanol regulation of NLRP3 inflammasome complex assembly positive regulation of NLRP3 inflammasome complex assembly positive regulation of pattern recognition receptor signaling pathway positive regulation of inflammasome-mediated signaling pathway regulation of inflammasome-mediated signaling pathway regulation of pattern recognition receptor signaling pathway regulation of cellular component organization positive regulation of cellular component organization regulation of cytoplasmic pattern recognition receptor signaling pathway regulation of protein-containing complex assembly positive regulation of protein-containing complex assembly positive regulation of cellular component biogenesis regulation of cellular component biogenesis regulation of inflammatory response response to mechanical stimulus response to abiotic stimulus cellular response to mechanical stimulus cellular response to abiotic stimulus cellular response to external stimulus cellular response to environmental stimulus toll-like receptor TLR6:TLR2 signaling pathway positive regulation of interleukin-23 production interleukin-23 production regulation of interleukin-23 production interleukin-17 production regulation of interleukin-17 production positive regulation of interleukin-17 production cellular response to interleukin-1 interleukin-1-mediated signaling pathway regulation of cytokine production involved in inflammatory response production of molecular mediator involved in inflammatory response cytokine production involved in inflammatory response positive regulation of cytokine production involved in inflammatory response response to amine response to nitrogen compound defense response to Gram-positive bacterium	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery extrinsic component of plasma membrane cytoplasmic side of plasma membrane cytoplasmic side of membrane membrane plasma membrane extrinsic component of membrane extrinsic component of cytoplasmic side of plasma membrane side of membrane endosome membrane cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery extrinsic component of plasma membrane cytoplasmic side of plasma membrane cytoplasmic side of membrane membrane plasma membrane extrinsic component of membrane extrinsic component of cytoplasmic side of plasma membrane side of membrane endosome membrane membrane-bounded organelle endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle vesicle organelle membrane cell surface protein-containing complex nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth GB], AB [auth N], AC [auth TB], B [auth AA], A, AA [auth GB], AB [auth N], AC [auth TB], B [auth AA], BA [auth GC], BB [auth NA], BC [auth TC], C [auth AB], CA [auth H], CB [auth NB], CC [auth U], D [auth AC], DA [auth HA], DB [auth NC], DC [auth UA], E [auth B], EA [auth HB], EB [auth O], EC [auth UB], F [auth BA], FA [auth HC], FB [auth OA], FC [auth UC], G [auth BB], GA [auth I], GB [auth OB], GC [auth V], H [auth BC], HA [auth IA], HB [auth OC], HC [auth VA], I [auth C], IA [auth IB], IB [auth P], IC [auth VB], J [auth CA], JA [auth IC], JB [auth PA], JC [auth VC], K [auth CB], KA [auth J], KB [auth PB], KC [auth W], L [auth CC], LA [auth JA], LB [auth PC], LC [auth WA], M [auth D], MA [auth JB], MB [auth Q], MC [auth WB], N [auth DA], NA [auth JC], NB [auth QA], NC [auth WC], O [auth DB], OA [auth K], OB [auth QB], OC [auth X], P [auth DC], PA [auth KA], PB [auth QC], PC [auth XA], Q [auth E], QA [auth KB], QB [auth R], QC [auth XB], R [auth EA], RA [auth KC], RB [auth RA], RC [auth XC], S [auth EB], SA [auth L], SB [auth RB], SC [auth Y], T [auth EC], TA [auth LA], TB [auth RC], TC [auth YA], U [auth F], UA [auth LB], UB [auth S], UC [auth YB], V [auth FA], VA [auth LC], VB [auth SA], VC [auth YC], W [auth FB], WA [auth M], WB [auth SB], WC [auth Z], X [auth FC], XA [auth MA], XB [auth SC], XC [auth ZA], Y [auth G], YA [auth MB], YB [auth T], YC [auth ZB], Z [auth GA], ZA [auth MC], ZB [auth TA], ZC	IPR000488	Death domain	Domain
A, AA [auth GB], AB [auth N], AC [auth TB], B [auth AA], A, AA [auth GB], AB [auth N], AC [auth TB], B [auth AA], BA [auth GC], BB [auth NA], BC [auth TC], C [auth AB], CA [auth H], CB [auth NB], CC [auth U], D [auth AC], DA [auth HA], DB [auth NC], DC [auth UA], E [auth B], EA [auth HB], EB [auth O], EC [auth UB], F [auth BA], FA [auth HC], FB [auth OA], FC [auth UC], G [auth BB], GA [auth I], GB [auth OB], GC [auth V], H [auth BC], HA [auth IA], HB [auth OC], HC [auth VA], I [auth C], IA [auth IB], IB [auth P], IC [auth VB], J [auth CA], JA [auth IC], JB [auth PA], JC [auth VC], K [auth CB], KA [auth J], KB [auth PB], KC [auth W], L [auth CC], LA [auth JA], LB [auth PC], LC [auth WA], M [auth D], MA [auth JB], MB [auth Q], MC [auth WB], N [auth DA], NA [auth JC], NB [auth QA], NC [auth WC], O [auth DB], OA [auth K], OB [auth QB], OC [auth X], P [auth DC], PA [auth KA], PB [auth QC], PC [auth XA], Q [auth E], QA [auth KB], QB [auth R], QC [auth XB], R [auth EA], RA [auth KC], RB [auth RA], RC [auth XC], S [auth EB], SA [auth L], SB [auth RB], SC [auth Y], T [auth EC], TA [auth LA], TB [auth RC], TC [auth YA], U [auth F], UA [auth LB], UB [auth S], UC [auth YB], V [auth FA], VA [auth LC], VB [auth SA], VC [auth YC], W [auth FB], WA [auth M], WB [auth SB], WC [auth Z], X [auth FC], XA [auth MA], XB [auth SC], XC [auth ZA], Y [auth G], YA [auth MB], YB [auth T], YC [auth ZB], Z [auth GA], ZA [auth MC], ZB [auth TA], ZC	IPR035897	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Homologous Superfamily
A, AA [auth GB], AB [auth N], AC [auth TB], B [auth AA], A, AA [auth GB], AB [auth N], AC [auth TB], B [auth AA], BA [auth GC], BB [auth NA], BC [auth TC], C [auth AB], CA [auth H], CB [auth NB], CC [auth U], D [auth AC], DA [auth HA], DB [auth NC], DC [auth UA], E [auth B], EA [auth HB], EB [auth O], EC [auth UB], F [auth BA], FA [auth HC], FB [auth OA], FC [auth UC], G [auth BB], GA [auth I], GB [auth OB], GC [auth V], H [auth BC], HA [auth IA], HB [auth OC], HC [auth VA], I [auth C], IA [auth IB], IB [auth P], IC [auth VB], J [auth CA], JA [auth IC], JB [auth PA], JC [auth VC], K [auth CB], KA [auth J], KB [auth PB], KC [auth W], L [auth CC], LA [auth JA], LB [auth PC], LC [auth WA], M [auth D], MA [auth JB], MB [auth Q], MC [auth WB], N [auth DA], NA [auth JC], NB [auth QA], NC [auth WC], O [auth DB], OA [auth K], OB [auth QB], OC [auth X], P [auth DC], PA [auth KA], PB [auth QC], PC [auth XA], Q [auth E], QA [auth KB], QB [auth R], QC [auth XB], R [auth EA], RA [auth KC], RB [auth RA], RC [auth XC], S [auth EB], SA [auth L], SB [auth RB], SC [auth Y], T [auth EC], TA [auth LA], TB [auth RC], TC [auth YA], U [auth F], UA [auth LB], UB [auth S], UC [auth YB], V [auth FA], VA [auth LC], VB [auth SA], VC [auth YC], W [auth FB], WA [auth M], WB [auth SB], WC [auth Z], X [auth FC], XA [auth MA], XB [auth SC], XC [auth ZA], Y [auth G], YA [auth MB], YB [auth T], YC [auth ZB], Z [auth GA], ZA [auth MC], ZB [auth TA], ZC	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	Domain
A, AA [auth GB], AB [auth N], AC [auth TB], B [auth AA], A, AA [auth GB], AB [auth N], AC [auth TB], B [auth AA], BA [auth GC], BB [auth NA], BC [auth TC], C [auth AB], CA [auth H], CB [auth NB], CC [auth U], D [auth AC], DA [auth HA], DB [auth NC], DC [auth UA], E [auth B], EA [auth HB], EB [auth O], EC [auth UB], F [auth BA], FA [auth HC], FB [auth OA], FC [auth UC], G [auth BB], GA [auth I], GB [auth OB], GC [auth V], H [auth BC], HA [auth IA], HB [auth OC], HC [auth VA], I [auth C], IA [auth IB], IB [auth P], IC [auth VB], J [auth CA], JA [auth IC], JB [auth PA], JC [auth VC], K [auth CB], KA [auth J], KB [auth PB], KC [auth W], L [auth CC], LA [auth JA], LB [auth PC], LC [auth WA], M [auth D], MA [auth JB], MB [auth Q], MC [auth WB], N [auth DA], NA [auth JC], NB [auth QA], NC [auth WC], O [auth DB], OA [auth K], OB [auth QB], OC [auth X], P [auth DC], PA [auth KA], PB [auth QC], PC [auth XA], Q [auth E], QA [auth KB], QB [auth R], QC [auth XB], R [auth EA], RA [auth KC], RB [auth RA], RC [auth XC], S [auth EB], SA [auth L], SB [auth RB], SC [auth Y], T [auth EC], TA [auth LA], TB [auth RC], TC [auth YA], U [auth F], UA [auth LB], UB [auth S], UC [auth YB], V [auth FA], VA [auth LC], VB [auth SA], VC [auth YC], W [auth FB], WA [auth M], WB [auth SB], WC [auth Z], X [auth FC], XA [auth MA], XB [auth SC], XC [auth ZA], Y [auth G], YA [auth MB], YB [auth T], YC [auth ZB], Z [auth GA], ZA [auth MC], ZB [auth TA], ZC	IPR011029	Death-like domain superfamily	Homologous Superfamily
A, AA [auth GB], AB [auth N], AC [auth TB], B [auth AA], A, AA [auth GB], AB [auth N], AC [auth TB], B [auth AA], BA [auth GC], BB [auth NA], BC [auth TC], C [auth AB], CA [auth H], CB [auth NB], CC [auth U], D [auth AC], DA [auth HA], DB [auth NC], DC [auth UA], E [auth B], EA [auth HB], EB [auth O], EC [auth UB], F [auth BA], FA [auth HC], FB [auth OA], FC [auth UC], G [auth BB], GA [auth I], GB [auth OB], GC [auth V], H [auth BC], HA [auth IA], HB [auth OC], HC [auth VA], I [auth C], IA [auth IB], IB [auth P], IC [auth VB], J [auth CA], JA [auth IC], JB [auth PA], JC [auth VC], K [auth CB], KA [auth J], KB [auth PB], KC [auth W], L [auth CC], LA [auth JA], LB [auth PC], LC [auth WA], M [auth D], MA [auth JB], MB [auth Q], MC [auth WB], N [auth DA], NA [auth JC], NB [auth QA], NC [auth WC], O [auth DB], OA [auth K], OB [auth QB], OC [auth X], P [auth DC], PA [auth KA], PB [auth QC], PC [auth XA], Q [auth E], QA [auth KB], QB [auth R], QC [auth XB], R [auth EA], RA [auth KC], RB [auth RA], RC [auth XC], S [auth EB], SA [auth L], SB [auth RB], SC [auth Y], T [auth EC], TA [auth LA], TB [auth RC], TC [auth YA], U [auth F], UA [auth LB], UB [auth S], UC [auth YB], V [auth FA], VA [auth LC], VB [auth SA], VC [auth YC], W [auth FB], WA [auth M], WB [auth SB], WC [auth Z], X [auth FC], XA [auth MA], XB [auth SC], XC [auth ZA], Y [auth G], YA [auth MB], YB [auth T], YC [auth ZB], Z [auth GA], ZA [auth MC], ZB [auth TA], ZC	IPR034249	MyD88, death domain	Domain
A, AA [auth GB], AB [auth N], AC [auth TB], B [auth AA], A, AA [auth GB], AB [auth N], AC [auth TB], B [auth AA], BA [auth GC], BB [auth NA], BC [auth TC], C [auth AB], CA [auth H], CB [auth NB], CC [auth U], D [auth AC], DA [auth HA], DB [auth NC], DC [auth UA], E [auth B], EA [auth HB], EB [auth O], EC [auth UB], F [auth BA], FA [auth HC], FB [auth OA], FC [auth UC], G [auth BB], GA [auth I], GB [auth OB], GC [auth V], H [auth BC], HA [auth IA], HB [auth OC], HC [auth VA], I [auth C], IA [auth IB], IB [auth P], IC [auth VB], J [auth CA], JA [auth IC], JB [auth PA], JC [auth VC], K [auth CB], KA [auth J], KB [auth PB], KC [auth W], L [auth CC], LA [auth JA], LB [auth PC], LC [auth WA], M [auth D], MA [auth JB], MB [auth Q], MC [auth WB], N [auth DA], NA [auth JC], NB [auth QA], NC [auth WC], O [auth DB], OA [auth K], OB [auth QB], OC [auth X], P [auth DC], PA [auth KA], PB [auth QC], PC [auth XA], Q [auth E], QA [auth KB], QB [auth R], QC [auth XB], R [auth EA], RA [auth KC], RB [auth RA], RC [auth XC], S [auth EB], SA [auth L], SB [auth RB], SC [auth Y], T [auth EC], TA [auth LA], TB [auth RC], TC [auth YA], U [auth F], UA [auth LB], UB [auth S], UC [auth YB], V [auth FA], VA [auth LC], VB [auth SA], VC [auth YC], W [auth FB], WA [auth M], WB [auth SB], WC [auth Z], X [auth FC], XA [auth MA], XB [auth SC], XC [auth ZA], Y [auth G], YA [auth MB], YB [auth T], YC [auth ZB], Z [auth GA], ZA [auth MC], ZB [auth TA], ZC	IPR017281	Myeloid differentiation primary response protein MyD88	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, AA [auth GB], AB [auth N], AC [auth TB], B [auth AA], A, AA [auth GB], AB [auth N], AC [auth TB], B [auth AA], BA [auth GC], BB [auth NA], BC [auth TC], C [auth AB], CA [auth H], CB [auth NB], CC [auth U], D [auth AC], DA [auth HA], DB [auth NC], DC [auth UA], E [auth B], EA [auth HB], EB [auth O], EC [auth UB], F [auth BA], FA [auth HC], FB [auth OA], FC [auth UC], G [auth BB], GA [auth I], GB [auth OB], GC [auth V], H [auth BC], HA [auth IA], HB [auth OC], HC [auth VA], I [auth C], IA [auth IB], IB [auth P], IC [auth VB], J [auth CA], JA [auth IC], JB [auth PA], JC [auth VC], K [auth CB], KA [auth J], KB [auth PB], KC [auth W], L [auth CC], LA [auth JA], LB [auth PC], LC [auth WA], M [auth D], MA [auth JB], MB [auth Q], MC [auth WB], N [auth DA], NA [auth JC], NB [auth QA], NC [auth WC], O [auth DB], OA [auth K], OB [auth QB], OC [auth X], P [auth DC], PA [auth KA], PB [auth QC], PC [auth XA], Q [auth E], QA [auth KB], QB [auth R], QC [auth XB], R [auth EA], RA [auth KC], RB [auth RA], RC [auth XC], S [auth EB], SA [auth L], SB [auth RB], SC [auth Y], T [auth EC], TA [auth LA], TB [auth RC], TC [auth YA], U [auth F], UA [auth LB], UB [auth S], UC [auth YB], V [auth FA], VA [auth LC], VB [auth SA], VC [auth YC], W [auth FB], WA [auth M], WB [auth SB], WC [auth Z], X [auth FC], XA [auth MA], XB [auth SC], XC [auth ZA], Y [auth G], YA [auth MB], YB [auth T], YC [auth ZB], Z [auth GA], ZA [auth MC], ZB [auth TA], ZC	: Q99836	diffuse large B-cell lymphoma pyogenic bacterial infections due to MyD88 deficiency Waldenstrom macroglobulinemia follicular lymphoma pneumonia hypertensive disorder lymphoplasmacytic lymphoma Neoplasm Invasiveness macroglobulinemia extrahepatic cholestasis hypereosinophilic syndrome ischemia reperfusion injury lung cancer lymphoma arthritic joint disease diffuse large B-cell lymphoma pyogenic bacterial infections due to MyD88 deficiency Waldenstrom macroglobulinemia follicular lymphoma pneumonia hypertensive disorder lymphoplasmacytic lymphoma Neoplasm Invasiveness macroglobulinemia extrahepatic cholestasis hypereosinophilic syndrome ischemia reperfusion injury lung cancer lymphoma arthritic joint disease cancer congenital anemia macroglobulinemia, Waldenstrom, 1 multiple sclerosis ovarian cancer glioblastoma psoriasis subependymal giant cell astrocytoma juvenile dermatomyositis lung carcinoma astrocytic tumor cutaneous lupus erythematosus malignant glioma pancreatic intraductal papillary-mucinous neoplasm pneumonitis hematologic disease lymphatic system disease autoimmune disease colitis malignant mesothelioma pilocytic astrocytoma primitive neuroectodermal tumor

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.