Annotations: 8Z1C

Cryo-EM structure of apo Aspergillus terreus glutamate dehydrogenase (AtGDH) in the closed conformation (form 1)

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth C]	Fe_hyd_SSU	e8z1cC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
E [auth B]	Fe_hyd_SSU	e8z1cB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
D [auth A]	Fe_hyd_SSU	e8z1cA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
C [auth D]	Fe_hyd_SSU	e8z1cD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
B [auth F]	Fe_hyd_SSU	e8z1cF1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
A [auth E]	Fe_hyd_SSU	e8z1cE1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], F [auth C]	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain (ELFV_dehydrog_N)	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain		Domain
A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], F [auth C]	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase (ELFV_dehydrog)	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], F [auth C]	Glutamate dehydrogenase	oxidoreductase activity, acting on the CH-NH2 group of donors amino-acid dehydrogenase [NAD(P)+] activity L-glutamate dehydrogenase (NADP+) activity oxidoreductase activity L-glutamate dehydrogenase [NAD(P)+] activity oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor catalytic activity	amino acid metabolic process primary metabolic process metabolic process cellular process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], F [auth C]	IPR006095	Glutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase	Family
A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], F [auth C]	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], F [auth C]	IPR046346	Aminoacid dehydrogenase-like, N-terminal domain superfamily	Homologous Superfamily
A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], F [auth C]	IPR033922	NAD(P) binding domain of glutamate dehydrogenase	Domain
A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], F [auth C]	IPR006096	Glutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase, C-terminal	Domain
A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], F [auth C]	IPR050724	Glutamate/Leucine/Phenylalanine/Valine dehydrogenases	Family
A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], F [auth C]	IPR006097	Glutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase, dimerisation domain	Domain
A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], F [auth C]	IPR014362	Glutamate dehydrogenase	Family
A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], F [auth C]	IPR033524	Leu/Phe/Val dehydrogenases active site	Active Site

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8Z1C | pdb_00008z1c

Cryo-EM structure of apo Aspergillus terreus glutamate dehydrogenase (AtGDH) in the closed conformation (form 1)

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage