9BDE

Middle Region of Apolipoprotein B 100 bound to Low Density Lipoprotein Receptor


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth B]SCOP2B SuperfamilyType 2 solute binding protein-like 8058187 3000083 SCOP2B (2022-06-29)
F [auth R]SCOP2B SuperfamilyLDL receptor-like module 8043873 3000728 SCOP2B (2022-06-29)
F [auth R]SCOP2B SuperfamilyEGF/Laminin-like 8056609 3000412 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth B]PF02216B domain (B)B domainThis family contains the B domain of Staphylococcal protein A, which specifically binds to the Fc portion of immunoglobulin G. Domain
F [auth R]PF00057Low-density lipoprotein receptor domain class A (Ldl_recept_a)Low-density lipoprotein receptor domain class A- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth H]Legobody 8D3 Fab Heavy Chain---
B [auth A]Apolipoprotein B 100
C [auth L]Legobody 8D3 Fab light chain---
D [auth B]Maltose/maltodextrin-binding periplasmic protein,Immunoglobulin G-binding protein A,Immunoglobulin G-binding protein G
E [auth N]ApoB100 nanobody 4---
F [auth R]Low-density lipoprotein receptor

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth A]IPR016024Armadillo-type foldHomologous Superfamily
B [auth A]IPR015255Vitellinogen, open beta-sheetDomain
B [auth A]IPR015819Lipid transport protein, beta-sheet shellHomologous Superfamily
B [auth A]IPR022176Apolipoprotein B100 C-terminalDomain
B [auth A]IPR052418Apolipoprotein BFamily
B [auth A]IPR011030Lipovitellin-phosvitin complex, superhelical domainHomologous Superfamily
B [auth A]IPR015816Vitellinogen, beta-sheet N-terminalHomologous Superfamily
B [auth A]IPR001747Vitellogenin, N-terminalDomain
B [auth A]IPR009454Lipid transport, open beta-sheetDomain
B [auth A]IPR015817Vitellinogen, open beta-sheet, subdomain 1Homologous Superfamily
D [auth B]IPR006061Solute-binding family 1, conserved siteConserved Site
D [auth B]IPR006060Maltose/Cyclodextrin ABC transporter, substrate-binding proteinFamily
D [auth B]IPR006059Bacterial-type extracellular solute-binding proteinFamily
D [auth B]IPR009063Immunoglobulin/albumin-binding domain superfamilyHomologous Superfamily
D [auth B]IPR005877YSIRK Gram-positive signal peptideDomain
D [auth B]IPR036779LysM domain superfamilyHomologous Superfamily
D [auth B]IPR005038Octapeptide repeatRepeat
D [auth B]IPR003132Protein A, Ig-binding domainDomain
D [auth B]IPR018392LysM domainDomain
D [auth B]IPR019931LPXTG cell wall anchor domainDomain
D [auth B]IPR009063Immunoglobulin/albumin-binding domain superfamilyHomologous Superfamily
D [auth B]IPR019950M protein-type anchor domainDomain
D [auth B]IPR005877YSIRK Gram-positive signal peptideDomain
D [auth B]IPR000724IgG-binding BDomain
D [auth B]IPR035152GA-like domainDomain
D [auth B]IPR019931LPXTG cell wall anchor domainDomain
F [auth R]IPR018097EGF-like calcium-binding, conserved siteConserved Site
F [auth R]IPR036055LDL receptor-like superfamilyHomologous Superfamily
F [auth R]IPR049883NOTCH1 EGF-like calcium-binding domainDomain
F [auth R]IPR000033LDLR class B repeatRepeat
F [auth R]IPR001881EGF-like calcium-binding domainDomain
F [auth R]IPR023415Low-density lipoprotein (LDL) receptor class A, conserved siteConserved Site
F [auth R]IPR011042Six-bladed beta-propeller, TolB-likeHomologous Superfamily
F [auth R]IPR002172Low-density lipoprotein (LDL) receptor class A repeatRepeat
F [auth R]IPR000742EGF-like domainDomain
F [auth R]IPR051221Low-density lipoprotein receptor-relatedFamily
F [auth R]IPR009030Growth factor receptor cysteine-rich domain superfamilyHomologous Superfamily
F [auth R]IPR000152EGF-type aspartate/asparagine hydroxylation sitePTM

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
B [auth A]PharosP04114
F [auth R]PharosP01130