9BYM | pdb_00009bym

Cryo-EM structure of ATP synthase non-stator state

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth C], R [auth B]	ATP synthase subunit alpha	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity ligase activity cation binding metal ion binding	-	membrane-bounded organelle mitochondrial membrane intracellular anatomical structure organelle inner membrane mitochondrion membrane intracellular membrane-bounded organelle mitochondrial inner membrane intracellular organelle organelle envelope cellular anatomical structure organelle mitochondrial envelope cytoplasm membrane-bounded organelle mitochondrial membrane intracellular anatomical structure organelle inner membrane mitochondrion membrane intracellular membrane-bounded organelle mitochondrial inner membrane intracellular organelle organelle envelope cellular anatomical structure organelle mitochondrial envelope cytoplasm organelle membrane cell periphery plasma membrane respiratory chain complex protein-containing complex catalytic complex proton-transporting ATP synthase complex membrane protein complex cation channel complex transporter complex proton-transporting two-sector ATPase complex transmembrane transporter complex monoatomic ion channel complex
C [auth D], D [auth E], E [auth F]	ATP synthase subunit beta	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity ligase activity cation binding metal ion binding	ribose phosphate metabolic process aerobic respiration cellular respiration oxidative phosphorylation ATP metabolic process energy derivation by oxidation of organic compounds ATP biosynthetic process nucleotide biosynthetic process carbohydrate derivative metabolic process purine ribonucleotide biosynthetic process purine ribonucleoside triphosphate biosynthetic process proton motive force-driven ATP synthesis nucleobase-containing compound metabolic process ribonucleotide biosynthetic process purine nucleotide metabolic process ribose phosphate metabolic process aerobic respiration cellular respiration oxidative phosphorylation ATP metabolic process energy derivation by oxidation of organic compounds ATP biosynthetic process nucleotide biosynthetic process carbohydrate derivative metabolic process purine ribonucleotide biosynthetic process purine ribonucleoside triphosphate biosynthetic process proton motive force-driven ATP synthesis nucleobase-containing compound metabolic process ribonucleotide biosynthetic process purine nucleotide metabolic process ribonucleotide metabolic process purine nucleoside triphosphate biosynthetic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process purine ribonucleoside triphosphate metabolic process small molecule metabolic process phosphorus metabolic process ribose phosphate biosynthetic process nucleoside phosphate metabolic process carbohydrate derivative biosynthetic process purine nucleoside triphosphate metabolic process nucleoside triphosphate biosynthetic process primary metabolic process generation of precursor metabolites and energy nucleotide metabolic process nucleobase-containing compound biosynthetic process ribonucleoside triphosphate biosynthetic process purine-containing compound metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process nucleoside phosphate biosynthetic process proton motive force-driven mitochondrial ATP synthesis metabolic process cellular process nucleoside triphosphate metabolic process purine ribonucleotide metabolic process purine nucleotide biosynthetic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle respiratory chain complex protein-containing complex catalytic complex proton-transporting ATP synthase complex membrane membrane protein complex membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle respiratory chain complex protein-containing complex catalytic complex proton-transporting ATP synthase complex membrane membrane protein complex cation channel complex transporter complex proton-transporting two-sector ATPase complex transmembrane transporter complex monoatomic ion channel complex
F [auth J]	ATPase inhibitor, mitochondrial	protein-containing complex binding binding mitochondrial proton-transporting ATP synthase complex binding protein binding angiostatin binding calmodulin binding molecular function inhibitor activity molecular function regulator activity ATPase inhibitor activity ATPase binding enzyme binding identical protein binding	regulation of mitochondrial membrane potential membrane depolarization biological regulation regulation of biological quality mitochondrial depolarization regulation of membrane potential aerobic respiration oxidative phosphorylation regulation of cellular process negative regulation of small molecule metabolic process nucleotide biosynthetic process negative regulation of biological process carbohydrate derivative metabolic process purine ribonucleotide biosynthetic process regulation of mitochondrial membrane potential membrane depolarization biological regulation regulation of biological quality mitochondrial depolarization regulation of membrane potential aerobic respiration oxidative phosphorylation regulation of cellular process negative regulation of small molecule metabolic process nucleotide biosynthetic process negative regulation of biological process carbohydrate derivative metabolic process purine ribonucleotide biosynthetic process negative regulation of ATP metabolic process purine ribonucleoside triphosphate biosynthetic process regulation of nucleotide biosynthetic process regulation of primary metabolic process regulation of ATP metabolic process nucleobase-containing compound metabolic process ribonucleotide biosynthetic process negative regulation of nucleotide metabolic process purine nucleoside triphosphate biosynthetic process regulation of small molecule metabolic process negative regulation of nucleotide biosynthetic process negative regulation of mitochondrial ATP synthesis coupled proton transport regulation of nucleotide metabolic process small molecule metabolic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process phosphorus metabolic process ribose phosphate biosynthetic process nucleoside phosphate metabolic process regulation of biological process negative regulation of metabolic process primary metabolic process nucleotide metabolic process regulation of purine nucleotide metabolic process ribonucleoside triphosphate biosynthetic process biosynthetic process organophosphate biosynthetic process nucleoside phosphate biosynthetic process metabolic process regulation of phosphorus metabolic process proton motive force-driven mitochondrial ATP synthesis nucleoside triphosphate metabolic process purine ribonucleotide metabolic process regulation of metabolic process purine nucleotide biosynthetic process ribose phosphate metabolic process cellular respiration ATP metabolic process negative regulation of purine nucleotide metabolic process energy derivation by oxidation of organic compounds ATP biosynthetic process proton motive force-driven ATP synthesis negative regulation of ATP biosynthetic process regulation of mitochondrial ATP synthesis coupled proton transport purine nucleotide metabolic process ribonucleotide metabolic process negative regulation of purine nucleotide biosynthetic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process purine ribonucleoside triphosphate metabolic process negative regulation of cellular process regulation of biosynthetic process purine nucleoside triphosphate metabolic process carbohydrate derivative biosynthetic process regulation of purine nucleotide biosynthetic process nucleoside triphosphate biosynthetic process generation of precursor metabolites and energy nucleobase-containing compound biosynthetic process purine-containing compound metabolic process regulation of ATP biosynthetic process organophosphate metabolic process negative regulation of biosynthetic process negative regulation of phosphorus metabolic process cellular process response to stimulus response to stress response to ischemia developmental process multicellular organismal process cellular developmental process homeostatic process hemopoiesis cell development erythrocyte differentiation multicellular organismal-level homeostasis myeloid cell differentiation immune system process cell differentiation anatomical structure development homeostasis of number of cells myeloid cell homeostasis erythrocyte homeostasis negative regulation of cardiac muscle cell apoptotic process muscle cell apoptotic process negative regulation of programmed cell death regulation of apoptotic process regulation of cardiac muscle cell apoptotic process regulation of muscle cell apoptotic process regulation of programmed cell death cell death cardiac muscle cell apoptotic process negative regulation of apoptotic process regulation of striated muscle cell apoptotic process striated muscle cell apoptotic process negative regulation of muscle cell apoptotic process negative regulation of striated muscle cell apoptotic process apoptotic process programmed cell death heme metabolic process pigment metabolic process porphyrin-containing compound biosynthetic process tetrapyrrole metabolic process heme biosynthetic process pigment biosynthetic process tetrapyrrole biosynthetic process porphyrin-containing compound metabolic process catabolic process regulation of type 2 mitophagy macroautophagy positive regulation of type 2 mitophagy autophagy positive regulation of biological process regulation of autophagy positive regulation of autophagy of mitochondrion positive regulation of metabolic process mitophagy regulation of autophagy of mitochondrion positive regulation of macroautophagy process utilizing autophagic mechanism positive regulation of cellular process positive regulation of autophagy positive regulation of mitophagy regulation of mitophagy regulation of catabolic process positive regulation of catabolic process regulation of macroautophagy type 2 mitophagy autophagy of mitochondrion negative regulation of cell population proliferation cell population proliferation endothelial cell proliferation negative regulation of endothelial cell proliferation regulation of endothelial cell proliferation regulation of cell population proliferation regulation of epithelial cell proliferation epithelial cell proliferation negative regulation of epithelial cell proliferation negative regulation of hydrolase activity regulation of molecular function regulation of catalytic activity regulation of hydrolase activity negative regulation of molecular function negative regulation of catalytic activity	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cell surface protein-containing complex
G	ATP synthase subunit gamma	monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity ligase activity	-	membrane-bounded organelle mitochondrial membrane intracellular anatomical structure organelle inner membrane mitochondrion membrane intracellular membrane-bounded organelle mitochondrial inner membrane intracellular organelle organelle envelope cellular anatomical structure organelle mitochondrial envelope cytoplasm membrane-bounded organelle mitochondrial membrane intracellular anatomical structure organelle inner membrane mitochondrion membrane intracellular membrane-bounded organelle mitochondrial inner membrane intracellular organelle organelle envelope cellular anatomical structure organelle mitochondrial envelope cytoplasm organelle membrane respiratory chain complex protein-containing complex catalytic complex proton-transporting ATP synthase complex membrane protein complex cation channel complex transporter complex proton-transporting two-sector ATPase complex transmembrane transporter complex monoatomic ion channel complex
I	ATP synthase F1 subunit epsilon	monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity ligase activity	-	membrane-bounded organelle mitochondrial membrane intracellular anatomical structure organelle inner membrane mitochondrion membrane intracellular membrane-bounded organelle mitochondrial inner membrane intracellular organelle organelle envelope cellular anatomical structure organelle mitochondrial envelope cytoplasm membrane-bounded organelle mitochondrial membrane intracellular anatomical structure organelle inner membrane mitochondrion membrane intracellular membrane-bounded organelle mitochondrial inner membrane intracellular organelle organelle envelope cellular anatomical structure organelle mitochondrial envelope cytoplasm organelle membrane respiratory chain complex protein-containing complex catalytic complex proton-transporting ATP synthase complex membrane protein complex cation channel complex transporter complex proton-transporting two-sector ATPase complex transmembrane transporter complex monoatomic ion channel complex
J [auth K], K [auth L], L [auth N], M [auth O], N [auth P], J [auth K], K [auth L], L [auth N], M [auth O], N [auth P], O [auth Q], P [auth R], Q [auth M]	ATP synthase lipid-binding protein	monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity binding lipid binding	ribose phosphate metabolic process ATP metabolic process ATP biosynthetic process nucleotide biosynthetic process carbohydrate derivative metabolic process purine ribonucleotide biosynthetic process purine ribonucleoside triphosphate biosynthetic process proton motive force-driven ATP synthesis nucleobase-containing compound metabolic process ribonucleotide biosynthetic process purine nucleotide metabolic process ribonucleotide metabolic process purine nucleoside triphosphate biosynthetic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process ribose phosphate metabolic process ATP metabolic process ATP biosynthetic process nucleotide biosynthetic process carbohydrate derivative metabolic process purine ribonucleotide biosynthetic process purine ribonucleoside triphosphate biosynthetic process proton motive force-driven ATP synthesis nucleobase-containing compound metabolic process ribonucleotide biosynthetic process purine nucleotide metabolic process ribonucleotide metabolic process purine nucleoside triphosphate biosynthetic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process purine ribonucleoside triphosphate metabolic process small molecule metabolic process phosphorus metabolic process ribose phosphate biosynthetic process nucleoside phosphate metabolic process carbohydrate derivative biosynthetic process purine nucleoside triphosphate metabolic process nucleoside triphosphate biosynthetic process primary metabolic process nucleotide metabolic process nucleobase-containing compound biosynthetic process ribonucleoside triphosphate biosynthetic process purine-containing compound metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process nucleoside phosphate biosynthetic process metabolic process cellular process nucleoside triphosphate metabolic process purine ribonucleotide metabolic process purine nucleotide biosynthetic process	protein-containing complex cellular anatomical structure proton-transporting two-sector ATPase complex membrane membrane protein complex proton-transporting two-sector ATPase complex, proton-transporting domain respiratory chain complex catalytic complex proton-transporting ATP synthase complex cation channel complex transporter complex transmembrane transporter complex monoatomic ion channel complex membrane-bounded organelle protein-containing complex cellular anatomical structure proton-transporting two-sector ATPase complex membrane membrane protein complex proton-transporting two-sector ATPase complex, proton-transporting domain respiratory chain complex catalytic complex proton-transporting ATP synthase complex cation channel complex transporter complex transmembrane transporter complex monoatomic ion channel complex membrane-bounded organelle mitochondrial membrane intracellular anatomical structure mitochondrion intracellular membrane-bounded organelle intracellular organelle organelle envelope organelle mitochondrial envelope cytoplasm organelle membrane
H	ATP synthase F1 subunit delta	monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity ligase activity	-	membrane-bounded organelle mitochondrial membrane intracellular anatomical structure organelle inner membrane mitochondrion membrane intracellular membrane-bounded organelle mitochondrial inner membrane intracellular organelle organelle envelope cellular anatomical structure organelle mitochondrial envelope cytoplasm membrane-bounded organelle mitochondrial membrane intracellular anatomical structure organelle inner membrane mitochondrion membrane intracellular membrane-bounded organelle mitochondrial inner membrane intracellular organelle organelle envelope cellular anatomical structure organelle mitochondrial envelope cytoplasm organelle membrane respiratory chain complex protein-containing complex catalytic complex proton-transporting ATP synthase complex membrane protein complex cation channel complex transporter complex proton-transporting two-sector ATPase complex transmembrane transporter complex monoatomic ion channel complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth C], R [auth B]	IPR038376	ATP synthase, alpha subunit, C-terminal domain superfamily	Homologous Superfamily
A, B [auth C], R [auth B]	IPR004100	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	Domain
A, B [auth C], R [auth B]	IPR033732	ATP synthase, F1 complex, alpha subunit nucleotide-binding domain	Domain
A, B [auth C], R [auth B]	IPR036121	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily	Homologous Superfamily
A, B [auth C], R [auth B]	IPR023366	ATP synthase subunit alpha, N-terminal domain-like superfamily	Homologous Superfamily
A, B [auth C], R [auth B]	IPR000793	ATP synthase, alpha subunit, C-terminal	Domain
A, B [auth C], R [auth B]	IPR020003	ATPase, alpha/beta subunit, nucleotide-binding domain, active site	Active Site
A, B [auth C], R [auth B]	IPR000194	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	Domain
A, B [auth C], R [auth B]	IPR005294	ATP synthase, F1 complex, alpha subunit	Family
A, B [auth C], R [auth B]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
C [auth D], D [auth E], E [auth F]	IPR004100	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	Domain
C [auth D], D [auth E], E [auth F]	IPR024034	ATPase, F1/V1 complex, beta/alpha subunit, C-terminal	Homologous Superfamily
C [auth D], D [auth E], E [auth F]	IPR036121	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily	Homologous Superfamily
C [auth D], D [auth E], E [auth F]	IPR020003	ATPase, alpha/beta subunit, nucleotide-binding domain, active site	Active Site
C [auth D], D [auth E], E [auth F]	IPR050053	ATPase alpha/beta chains	Family
C [auth D], D [auth E], E [auth F]	IPR000194	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	Domain
C [auth D], D [auth E], E [auth F]	IPR055190	ATP synthase A/B type, C-terminal domain	Domain
C [auth D], D [auth E], E [auth F]	IPR003593	AAA+ ATPase domain	Domain
C [auth D], D [auth E], E [auth F]	IPR005722	ATP synthase, F1 complex, beta subunit	Family
C [auth D], D [auth E], E [auth F]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
F [auth J]	IPR007648	Mitochondrial ATPase inhibitor	Family
G	IPR023632	ATP synthase, F1 complex, gamma subunit conserved site	Conserved Site
G	IPR000131	ATP synthase, F1 complex, gamma subunit	Family
G	IPR035968	ATP synthase, F1 complex, gamma subunit superfamily	Homologous Superfamily
I	IPR036742	ATP synthase, F1 complex, epsilon subunit superfamily, mitochondrial	Homologous Superfamily
I	IPR006721	ATP synthase, F1 complex, epsilon subunit, mitochondrial	Family
J [auth K], K [auth L], L [auth N], M [auth O], N [auth P], J [auth K], K [auth L], L [auth N], M [auth O], N [auth P], O [auth Q], P [auth R], Q [auth M]	IPR035921	F/V-ATP synthase subunit C superfamily	Homologous Superfamily
J [auth K], K [auth L], L [auth N], M [auth O], N [auth P], J [auth K], K [auth L], L [auth N], M [auth O], N [auth P], O [auth Q], P [auth R], Q [auth M]	IPR038662	F1F0 ATP synthase subunit C superfamily	Homologous Superfamily
J [auth K], K [auth L], L [auth N], M [auth O], N [auth P], J [auth K], K [auth L], L [auth N], M [auth O], N [auth P], O [auth Q], P [auth R], Q [auth M]	IPR020537	ATP synthase, F0 complex, subunit C, DCCD-binding site	Binding Site
J [auth K], K [auth L], L [auth N], M [auth O], N [auth P], J [auth K], K [auth L], L [auth N], M [auth O], N [auth P], O [auth Q], P [auth R], Q [auth M]	IPR000454	ATP synthase, F0 complex, subunit C	Family
J [auth K], K [auth L], L [auth N], M [auth O], N [auth P], J [auth K], K [auth L], L [auth N], M [auth O], N [auth P], O [auth Q], P [auth R], Q [auth M]	IPR002379	V-ATPase proteolipid subunit C-like domain	Domain
H	IPR036771	F0F1 ATP synthase delta/epsilon subunit, N-terminal	Homologous Superfamily
H	IPR036794	ATP synthase delta/epsilon subunit, C-terminal domain superfamily	Homologous Superfamily
H	IPR020546	ATP synthase, F1 complex, delta/epsilon subunit, N-terminal	Domain
H	IPR048937	F1F0-ATP synthase delta subunit, C-terminal domain, metazoan	Domain
H	IPR001469	ATP synthase, F1 complex, delta/epsilon subunit	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.