9CMO | pdb_00009cmo

Cryo-EM model derived from localized reconstruction of Ad657-hexon-FII complex at 4.14A resolution

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth Z]SCOP2B SuperfamilyTrypsin-like serine proteases 8042154 3000114 SCOP2B (2022-06-29)
D [auth Z]SCOP2B SuperfamilyKringle-like 8038667 3000761 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth Z]PF09396Thrombin light chain (Thrombin_light)Thrombin light chainThrombin is an enzyme that cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII. Prothrombin is activated on the surface of a phospholipid membrane where factor Xa removes the activation peptide and cleave ...Thrombin is an enzyme that cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII. Prothrombin is activated on the surface of a phospholipid membrane where factor Xa removes the activation peptide and cleaves the remaining part into light and heavy chains. This domain corresponds to the light chain of thrombin.
Domain
D [auth Z]PF00051Kringle domain (Kringle)Kringle domainKringle domains have been found in plasminogen, hepatocyte growth factors, prothrombin, and apolipoprotein A. Structure is disulfide-rich, nearly all-beta. Domain
D [auth Z]PF00594Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain (Gla)Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domainThis domain is responsible for the high-affinity binding of calcium ions. This domain contains post-translational modifications of many glutamate residues by Vitamin K-dependent carboxylation to form gamma-carboxyglutamate (Gla). Domain
D [auth Z]PF00089Trypsin (Trypsin)TrypsinDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth J],
B [auth K],
C [auth L]		Hexon protein
D [auth Z]Prothrombin

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth J],
B [auth K],
C [auth L]		IPR044942Adenovirus Pll, hexon, subdomain 2Homologous Superfamily
A [auth J],
B [auth K],
C [auth L]		IPR016107Adenovirus Pll, hexon, N-terminalDomain
A [auth J],
B [auth K],
C [auth L]		IPR016108Adenovirus Pll, hexon, C-terminalDomain
A [auth J],
B [auth K],
C [auth L]		IPR016112Group II dsDNA virus coat/capsid proteinHomologous Superfamily
A [auth J],
B [auth K],
C [auth L]		IPR037542Adenovirus hexon proteinFamily
D [auth Z]IPR018992Thrombin light chainDomain
D [auth Z]IPR037111Thrombin light chain domain superfamilyHomologous Superfamily
D [auth Z]IPR003966Prothrombin/thrombinFamily
D [auth Z]IPR018114Serine proteases, trypsin family, histidine active siteActive Site
D [auth Z]IPR009003Peptidase S1, PA clanHomologous Superfamily
D [auth Z]IPR033116Serine proteases, trypsin family, serine active siteActive Site
D [auth Z]IPR001254Serine proteases, trypsin domainDomain
D [auth Z]IPR035972Gamma-carboxyglutamic acid-rich (GLA) domain superfamilyHomologous Superfamily
D [auth Z]IPR000001KringleDomain
D [auth Z]IPR000294Gamma-carboxyglutamic acid-rich (GLA) domainDomain
D [auth Z]IPR051659Serine Protease S1 Domain-Containing ProteinFamily
D [auth Z]IPR018056Kringle, conserved siteConserved Site
D [auth Z]IPR043504Peptidase_S1_PA_chymotrypsinUnknown
D [auth Z]IPR013806Kringle-like foldHomologous Superfamily
D [auth Z]IPR038178Kringle superfamilyHomologous Superfamily
D [auth Z]IPR001314Peptidase S1A, chymotrypsin familyFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
D [auth Z]Pharos:  P00734

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
D [auth Z]CGU Parent Component: GLU

RESID:  AA0032

PSI-MOD :  L-gamma-carboxyglutamic acid MOD:00041