9E23 | pdb_00009e23

Cryo-EM structure of Pre-Chi dynein tail

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth v]SCOP2B SuperfamilyDLC-like 8051841 3000821 SCOP2B (2022-06-29)
H [auth k]SCOP2B SuperfamilyDLC-like 8051841 3000821 SCOP2B (2022-06-29)
G [auth i]SCOP2B SuperfamilyDLC-like 8034979 3000821 SCOP2B (2022-06-29)
D [auth d]SCOP2B SuperfamilyDLC-like 8034979 3000821 SCOP2B (2022-06-29)
F [auth h]SCOP2B SuperfamilyDynein intermediate chain-like 8051842 3002038 SCOP2B (2022-06-29)
E [auth g]SCOP2B SuperfamilyDynein intermediate chain-like 8051842 3002038 SCOP2B (2022-06-29)
B [auth F]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8033463 3001810 SCOP2B (2022-06-29)
A [auth E]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8033463 3001810 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
K [auth C]WD40e9e23C1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
J [auth B]WD40e9e23B1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
I [auth v]WD40e9e23v1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
H [auth k]WD40e9e23k1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
G [auth i]WD40e9e23i1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
D [auth d]WD40e9e23d1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
P [auth D]WD40e9e23D1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
F [auth h]WD40e9e23h1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
E [auth g]WD40e9e23g1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
C [auth H]WD40e9e23H1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
B [auth F]WD40e9e23F1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
A [auth E]WD40e9e23E1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth B],
K [auth C]		PF05783Dynein light intermediate chain (DLIC) (DLIC)Dynein light intermediate chain (DLIC)- Family
C [auth H],
E [auth g],
F [auth h],
P [auth D]		PF01221Dynein light chain type 1 (Dynein_light)Dynein light chain type 1Domain
C [auth H],
E [auth g],
F [auth h],
P [auth D]		PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
A [auth E],
B [auth F]		PF03259Roadblock/LC7 domain (Robl_LC7)Roadblock/LC7 domainThis family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is pro ...This family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions [2]. This family also includes Swiss:Q9Y2Q5 Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus Swiss:Q50883, a protein involved in gliding motility [4]. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
L [auth e],
M [auth f],
N [auth A],
O [auth G]		Cytoplasmic dynein 1 heavy chain 1
J [auth B],
K [auth C]		Cytoplasmic dynein 1 light intermediate chain 2
H [auth k],
I [auth v]		Dynein light chain Tctex-type 1
D [auth d],
G [auth i]		Dynein light chain 1, cytoplasmic
C [auth H],
E [auth g],
F [auth h],
P [auth D]		Isoform 2C of Cytoplasmic dynein 1 intermediate chain 2
A [auth E],
B [auth F]		Dynein light chain roadblock-type 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
L [auth e],
M [auth f],
N [auth A],
O [auth G]		IPR026983Dynein heavy chainFamily
L [auth e],
M [auth f],
N [auth A],
O [auth G]		IPR013602Dynein heavy chain, linkerDomain
L [auth e],
M [auth f],
N [auth A],
O [auth G]		IPR041658Dynein heavy chain, AAA lid domainDomain
L [auth e],
M [auth f],
N [auth A],
O [auth G]		IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
L [auth e],
M [auth f],
N [auth A],
O [auth G]		IPR042222Dynein heavy chain, domain 2, N-terminalHomologous Superfamily
L [auth e],
M [auth f],
N [auth A],
O [auth G]		IPR043160Dynein heavy chain, C-terminal domain, barrel regionHomologous Superfamily
L [auth e],
M [auth f],
N [auth A],
O [auth G]		IPR042219Dynein heavy chain, AAA lid domain superfamilyHomologous Superfamily
L [auth e],
M [auth f],
N [auth A],
O [auth G]		IPR035706Dynein heavy chain, ATP-binding dynein motor regionDomain
L [auth e],
M [auth f],
N [auth A],
O [auth G]		IPR041228Dynein heavy chain, C-terminal domainDomain
L [auth e],
M [auth f],
N [auth A],
O [auth G]		IPR054354Dynein 2 heavy chain 1, cytoplasmic, ATPase lid domainDomain
L [auth e],
M [auth f],
N [auth A],
O [auth G]		IPR003593AAA+ ATPase domainDomain
L [auth e],
M [auth f],
N [auth A],
O [auth G]		IPR041466Dynein heavy chain, AAA 5 extension domainDomain
L [auth e],
M [auth f],
N [auth A],
O [auth G]		IPR042228Dynein heavy chain, linker, subdomain 3Homologous Superfamily
L [auth e],
M [auth f],
N [auth A],
O [auth G]		IPR035699Dynein heavy chain, hydrolytic ATP-binding dynein motor regionDomain
L [auth e],
M [auth f],
N [auth A],
O [auth G]		IPR024743Dynein heavy chain, coiled coil stalkDomain
L [auth e],
M [auth f],
N [auth A],
O [auth G]		IPR013594Dynein heavy chain, tailDomain
L [auth e],
M [auth f],
N [auth A],
O [auth G]		IPR043157Dynein heavy chain, AAA1 domain, small subdomainHomologous Superfamily
L [auth e],
M [auth f],
N [auth A],
O [auth G]		IPR004273Dynein heavy chain, D6 P-loop domainDomain
L [auth e],
M [auth f],
N [auth A],
O [auth G]		IPR024317Dynein heavy chain, AAA module D4Domain
J [auth B],
K [auth C]		IPR022780Dynein family light intermediate chainFamily
J [auth B],
K [auth C]		IPR008467Dynein 1 light intermediate chainFamily
J [auth B],
K [auth C]		IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
H [auth k],
I [auth v]		IPR038586Tctex-1-like superfamilyHomologous Superfamily
H [auth k],
I [auth v]		IPR005334Dynein light chain Tctex-1-likeFamily
D [auth d],
G [auth i]		IPR037177Dynein light chain superfamilyHomologous Superfamily
D [auth d],
G [auth i]		IPR019763Dynein light chain, type 1/2, conserved siteConserved Site
D [auth d],
G [auth i]		IPR001372Dynein light chain, type 1/2Family
C [auth H],
E [auth g],
F [auth h],
P [auth D]		IPR025956Cytoplasmic dynein 1 intermediate chain 1/2Family
C [auth H],
E [auth g],
F [auth h],
P [auth D]		IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
C [auth H],
E [auth g],
F [auth h],
P [auth D]		IPR001680WD40 repeatRepeat
C [auth H],
E [auth g],
F [auth h],
P [auth D]		IPR050687Dynein axonemal intermediate chain 1/2/3/4Family
C [auth H],
E [auth g],
F [auth h],
P [auth D]		IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
A [auth E],
B [auth F]		IPR016561Dynein light chain roadblock-type 1/2Family
A [auth E],
B [auth F]		IPR004942Roadblock/LAMTOR2 domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
L [auth e],
M [auth f],
N [auth A],
O [auth G]		:  Q14204
J [auth B],
K [auth C]		:  O43237
H [auth k],
I [auth v]		:  P63172
D [auth d],
G [auth i]		:  P63167
C [auth H],
E [auth g],
F [auth h],
P [auth D]		:  Q13409
A [auth E],
B [auth F]		:  Q9NP97