9FRA

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-MAP leaderless mRNA


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BA [auth 3]SCOP2B SuperfamilyL30e-like 8063950 3001739 SCOP2B (2022-06-29)
K [auth J]SCOP2B Superfamily50S Ribosomal protein L14-like 8053080 3000433 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth B]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
Q [auth P]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
R [auth Q]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1]. Domain
R [auth Q]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
BA [auth 3]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...Domain
J [auth I]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
K [auth J]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
L [auth K]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
M [auth L]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain
N [auth M]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
O [auth N]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
P [auth O]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
S [auth R]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
U [auth T]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19Domain
V [auth U]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
W [auth V]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
X [auth W]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
Y [auth X]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
Z [auth Y]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...Domain
AA [auth Z]PF07650KH domain (KH_2)KH domainDomain
AA [auth Z]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain
D [auth C]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
D [auth C]PF07754Small zinc finger protein HVO_2753-like, Zn-binding pocket (HVO_2753_ZBP)Small zinc finger protein HVO_2753-like, Zn-binding pocketThis domain is found in many archaeal proteins, including HVO_2753 (also known as Small CPxCG-related zinc finger protein) from Haloferax volcanii [1]. NMR 3D structure analysis revealed the content of four C(P)XCG motifs, suggesting the presence of ...Domain
E [auth D]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
E [auth D]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...Domain
F [auth E]PF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- Family
F [auth E]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
F [auth E]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. Domain
F [auth E]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...Domain
G [auth F]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
G [auth F]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
H [auth G]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
I [auth H]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth B]Small ribosomal subunit protein uS2
Q [auth P]Small ribosomal subunit protein uS14
R [auth Q]Small ribosomal subunit protein uS15
BA [auth 3]Large ribosomal subunit protein eL8
A [auth 2]rRNA 16S---
J [auth I]Small ribosomal subunit protein uS8
K [auth J]Small ribosomal subunit protein eS8
L [auth K]Small ribosomal subunit protein uS9
M [auth L]Small ribosomal subunit protein uS10
N [auth M]Small ribosomal subunit protein uS11
O [auth N]Small ribosomal subunit protein uS12
P [auth O]Small ribosomal subunit protein uS13
S [auth R]Small ribosomal subunit protein uS17
B [auth A]Small ribosomal subunit protein eS1
T [auth S]Small ribosomal subunit protein eS17
U [auth T]Small ribosomal subunit protein uS19
V [auth U]Small ribosomal subunit protein eS19
W [auth V]Small ribosomal subunit protein eS24
X [auth W]Small ribosomal subunit protein eS27
Y [auth X]Small ribosomal subunit protein eS28
Z [auth Y]Small ribosomal subunit protein eS31
AA [auth Z]Small ribosomal subunit protein uS3
CA [auth a]aS34- - -
DA [auth c]Small ribosomal subunit protein eS25 -
EA [auth d]VapB-type antitoxin- - -
FA [auth e]LSU ribosomal protein S30E (Rps30E)
GA [auth 5]mRNA_Map---
HA [auth 4]tRNA initiator Met---
IA [auth s]mRNA_Map---
D [auth C]Small zinc finger protein HVO-2753-like zinc-binding pocket domain-containing protein- - -
E [auth D]Small ribosomal subunit protein uS4
F [auth E]Small ribosomal subunit protein eS4
G [auth F]Small ribosomal subunit protein uS5
H [auth G]Small ribosomal subunit protein eS6
I [auth H]Small ribosomal subunit protein uS7

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth B]IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
C [auth B]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
C [auth B]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
C [auth B]IPR001865Small ribosomal subunit protein uS2Family
C [auth B]IPR023454Small ribosomal subunit protein uS2, archaealFamily
Q [auth P]IPR001209Small ribosomal subunit protein uS14Family
Q [auth P]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
Q [auth P]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
Q [auth P]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
Q [auth P]IPR023676Small ribosomal subunit protein uS14, archaeaFamily
R [auth Q]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
R [auth Q]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
R [auth Q]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
R [auth Q]IPR000589Small ribosomal subunit protein uS15Family
BA [auth 3]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
BA [auth 3]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
BA [auth 3]IPR022481Large ribosomal subunit protein eL8, archaeaFamily
BA [auth 3]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
BA [auth 3]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
BA [auth 3]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
J [auth I]IPR000630Small ribosomal subunit protein uS8Family
J [auth I]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
J [auth I]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
K [auth J]IPR001047Small ribosomal subunit protein eS8Family
K [auth J]IPR020919Small ribosomal subunit protein eS8, archaealFamily
K [auth J]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
K [auth J]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
L [auth K]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
L [auth K]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
L [auth K]IPR019958Small ribosomal subunit protein uS9, archaealFamily
L [auth K]IPR000754Small ribosomal subunit protein uS9Family
L [auth K]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
M [auth L]IPR001848Small ribosomal subunit protein uS10Family
M [auth L]IPR027486Small ribosomal subunit protein uS10 domainDomain
M [auth L]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
M [auth L]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
M [auth L]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
N [auth M]IPR019961Small ribosomal subunit protein uS11, archaealFamily
N [auth M]IPR001971Small ribosomal subunit protein uS11Family
N [auth M]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
N [auth M]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
O [auth N]IPR006032Small ribosomal subunit protein uS12Family
O [auth N]IPR022863Ribosomal protein uS12, archaeaFamily
O [auth N]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
O [auth N]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
P [auth O]IPR019977Small ribosomal subunit protein uS13, archaealFamily
P [auth O]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
P [auth O]IPR001892Small ribosomal subunit protein uS13Family
P [auth O]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
P [auth O]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
S [auth R]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
S [auth R]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
S [auth R]IPR000266Small ribosomal subunit protein uS17Family
S [auth R]IPR019978Small ribosomal subunit protein uS17, archaealFamily
S [auth R]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
B [auth A]IPR001593Small ribosomal subunit protein eS1Family
B [auth A]IPR030838Small ribosomal subunit protein eS1, archaealFamily
T [auth S]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
T [auth S]IPR001210Small ribosomal subunit protein eS17Family
T [auth S]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
U [auth T]IPR002222Small ribosomal subunit protein uS19Family
U [auth T]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
U [auth T]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
U [auth T]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
V [auth U]IPR027548Small ribosomal subunit protein eS19, archaealFamily
V [auth U]IPR001266Small ribosomal subunit protein eS19Family
V [auth U]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
V [auth U]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
W [auth V]IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
W [auth V]IPR001976Small ribosomal subunit protein eS24Family
W [auth V]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
W [auth V]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
X [auth W]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
X [auth W]IPR000592Small ribosomal subunit protein eS27Family
X [auth W]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Y [auth X]IPR028626Ribosomal protein eS28 conserved siteConserved Site
Y [auth X]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Y [auth X]IPR000289Small ribosomal subunit protein eS28Family
Z [auth Y]IPR002906Small ribosomal subunit protein eS31Domain
Z [auth Y]IPR022845Small ribosomal subunit protein eS31, archaeaFamily
Z [auth Y]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
AA [auth Z]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
AA [auth Z]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
AA [auth Z]IPR004087K Homology domainDomain
AA [auth Z]IPR004044K Homology domain, type 2Domain
AA [auth Z]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
AA [auth Z]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
AA [auth Z]IPR027488Small ribosomal subunit protein uS3, archaealFamily
AA [auth Z]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
AA [auth Z]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
DA [auth c]IPR004977Small ribosomal subunit protein eS25Family
DA [auth c]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
FA [auth e]IPR006846Small ribosomal subunit protein eS30Family
D [auth C]IPR011668Small zinc finger protein HVO_2753-like, zinc-binding pocketDomain
D [auth C]IPR044720Zinc finger protein HVO_2753-likeFamily
E [auth D]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
E [auth D]IPR002942RNA-binding S4 domainDomain
E [auth D]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
E [auth D]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
E [auth D]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
E [auth D]IPR022801Small ribosomal subunit protein uS4Family
E [auth D]IPR022802Small ribosomal subunit protein uS4, archaealFamily
F [auth E]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
F [auth E]IPR002942RNA-binding S4 domainDomain
F [auth E]IPR013845Small ribosomal subunit protein eS4, central regionDomain
F [auth E]IPR000876Small ribosomal subunit protein eS4Family
F [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
F [auth E]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
F [auth E]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
F [auth E]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
G [auth F]IPR000851Small ribosomal subunit protein uS5Family
G [auth F]IPR005711Small ribosomal subunit protein uS5, eukaryotic/archaealFamily
G [auth F]IPR047866Small ribosomal subunit protein uS5, archaeaFamily
G [auth F]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
G [auth F]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
G [auth F]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
G [auth F]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
G [auth F]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
H [auth G]IPR001377Small ribosomal subunit protein eS6Family
H [auth G]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
H [auth G]IPR020924Small ribosomal subunit protein eS6, archaealFamily
I [auth H]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
I [auth H]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
I [auth H]IPR000235Small ribosomal subunit protein uS7Family
I [auth H]IPR026018Small ribosomal subunit protein uS7, archaealFamily
I [auth H]IPR023798Small ribosomal subunit protein uS7 domainDomain
I [auth H]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily