9FSF

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-MAP leaderless mRNA with h44 in up position


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
K [auth J]SCOP2B Superfamily50S Ribosomal protein L14-like 8053080 3000433 SCOP2B (2022-06-29)
AA [auth 3]SCOP2B SuperfamilyL30e-like 8063950 3001739 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth I]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
K [auth J]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
L [auth K]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
M [auth L]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain
N [auth M]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
O [auth N]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
P [auth O]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1]. Domain
PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19Domain
PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...Domain
PF07650KH domain (KH_2)KH domainDomain
PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain
AA [auth 3]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...Domain
C [auth B]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
IA [auth P]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
D [auth C]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
D [auth C]PF07754Small zinc finger protein HVO_2753-like, Zn-binding pocket (HVO_2753_ZBP)Small zinc finger protein HVO_2753-like, Zn-binding pocketThis domain is found in many archaeal proteins, including HVO_2753 (also known as Small CPxCG-related zinc finger protein) from Haloferax volcanii [1]. NMR 3D structure analysis revealed the content of four C(P)XCG motifs, suggesting the presence of ...Domain
E [auth D]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
E [auth D]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...Domain
F [auth E]PF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- Family
F [auth E]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
F [auth E]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. Domain
F [auth E]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...Domain
G [auth F]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
G [auth F]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
H [auth G]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
I [auth H]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 2]rRNA 16S---
J [auth I]Small ribosomal subunit protein uS8
K [auth J]Small ribosomal subunit protein eS8
L [auth K]Small ribosomal subunit protein uS9
M [auth L]Small ribosomal subunit protein uS10
N [auth M]Small ribosomal subunit protein uS11
O [auth N]Small ribosomal subunit protein uS12
P [auth O]Small ribosomal subunit protein uS13
Small ribosomal subunit protein uS15
Small ribosomal subunit protein uS17
Small ribosomal subunit protein eS17
B [auth A]Small ribosomal subunit protein eS1
Small ribosomal subunit protein uS19
Small ribosomal subunit protein eS19
Small ribosomal subunit protein eS24
Small ribosomal subunit protein eS27
Small ribosomal subunit protein eS28
Small ribosomal subunit protein eS31
Small ribosomal subunit protein uS3
AA [auth 3]Large ribosomal subunit protein eL8
BA [auth c]Small ribosomal subunit protein eS25 -
CA [auth d]VapB-type antitoxin- - -
C [auth B]Small ribosomal subunit protein uS2
DA [auth e]LSU ribosomal protein S30E (Rps30E)
EA [auth 5]mRNA Map---
FA [auth 4]tRNA Met initiator---
GA [auth s]mRNA Map---
HA [auth a]aS34- - -
IA [auth P]Small ribosomal subunit protein uS14
D [auth C]Small zinc finger protein HVO-2753-like zinc-binding pocket domain-containing protein- - -
E [auth D]Small ribosomal subunit protein uS4
F [auth E]Small ribosomal subunit protein eS4
G [auth F]Small ribosomal subunit protein uS5
H [auth G]Small ribosomal subunit protein eS6
I [auth H]Small ribosomal subunit protein uS7

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth I]IPR000630Small ribosomal subunit protein uS8Family
J [auth I]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
J [auth I]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
K [auth J]IPR001047Small ribosomal subunit protein eS8Family
K [auth J]IPR020919Small ribosomal subunit protein eS8, archaealFamily
K [auth J]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
K [auth J]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
L [auth K]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
L [auth K]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
L [auth K]IPR019958Small ribosomal subunit protein uS9, archaealFamily
L [auth K]IPR000754Small ribosomal subunit protein uS9Family
L [auth K]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
M [auth L]IPR001848Small ribosomal subunit protein uS10Family
M [auth L]IPR027486Small ribosomal subunit protein uS10 domainDomain
M [auth L]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
M [auth L]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
M [auth L]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
N [auth M]IPR019961Small ribosomal subunit protein uS11, archaealFamily
N [auth M]IPR001971Small ribosomal subunit protein uS11Family
N [auth M]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
N [auth M]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
O [auth N]IPR006032Small ribosomal subunit protein uS12Family
O [auth N]IPR022863Ribosomal protein uS12, archaeaFamily
O [auth N]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
O [auth N]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
P [auth O]IPR019977Small ribosomal subunit protein uS13, archaealFamily
P [auth O]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
P [auth O]IPR001892Small ribosomal subunit protein uS13Family
P [auth O]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
P [auth O]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
IPR000589Small ribosomal subunit protein uS15Family
IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR000266Small ribosomal subunit protein uS17Family
IPR019978Small ribosomal subunit protein uS17, archaealFamily
IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
IPR001210Small ribosomal subunit protein eS17Family
IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
B [auth A]IPR001593Small ribosomal subunit protein eS1Family
B [auth A]IPR030838Small ribosomal subunit protein eS1, archaealFamily
IPR002222Small ribosomal subunit protein uS19Family
IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
IPR027548Small ribosomal subunit protein eS19, archaealFamily
IPR001266Small ribosomal subunit protein eS19Family
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
IPR001976Small ribosomal subunit protein eS24Family
IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
IPR000592Small ribosomal subunit protein eS27Family
IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
IPR028626Ribosomal protein eS28 conserved siteConserved Site
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR000289Small ribosomal subunit protein eS28Family
IPR002906Small ribosomal subunit protein eS31Domain
IPR022845Small ribosomal subunit protein eS31, archaeaFamily
IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
IPR004087K Homology domainDomain
IPR004044K Homology domain, type 2Domain
IPR015946K homology domain-like, alpha/betaHomologous Superfamily
IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
IPR027488Small ribosomal subunit protein uS3, archaealFamily
IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
AA [auth 3]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
AA [auth 3]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
AA [auth 3]IPR022481Large ribosomal subunit protein eL8, archaeaFamily
AA [auth 3]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
AA [auth 3]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
AA [auth 3]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
BA [auth c]IPR004977Small ribosomal subunit protein eS25Family
BA [auth c]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
C [auth B]IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
C [auth B]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
C [auth B]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
C [auth B]IPR001865Small ribosomal subunit protein uS2Family
C [auth B]IPR023454Small ribosomal subunit protein uS2, archaealFamily
DA [auth e]IPR006846Small ribosomal subunit protein eS30Family
IA [auth P]IPR001209Small ribosomal subunit protein uS14Family
IA [auth P]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
IA [auth P]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
IA [auth P]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
IA [auth P]IPR023676Small ribosomal subunit protein uS14, archaeaFamily
D [auth C]IPR011668Small zinc finger protein HVO_2753-like, zinc-binding pocketDomain
D [auth C]IPR044720Zinc finger protein HVO_2753-likeFamily
E [auth D]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
E [auth D]IPR002942RNA-binding S4 domainDomain
E [auth D]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
E [auth D]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
E [auth D]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
E [auth D]IPR022801Small ribosomal subunit protein uS4Family
E [auth D]IPR022802Small ribosomal subunit protein uS4, archaealFamily
F [auth E]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
F [auth E]IPR002942RNA-binding S4 domainDomain
F [auth E]IPR013845Small ribosomal subunit protein eS4, central regionDomain
F [auth E]IPR000876Small ribosomal subunit protein eS4Family
F [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
F [auth E]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
F [auth E]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
F [auth E]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
G [auth F]IPR000851Small ribosomal subunit protein uS5Family
G [auth F]IPR005711Small ribosomal subunit protein uS5, eukaryotic/archaealFamily
G [auth F]IPR047866Small ribosomal subunit protein uS5, archaeaFamily
G [auth F]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
G [auth F]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
G [auth F]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
G [auth F]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
G [auth F]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
H [auth G]IPR001377Small ribosomal subunit protein eS6Family
H [auth G]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
H [auth G]IPR020924Small ribosomal subunit protein eS6, archaealFamily
I [auth H]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
I [auth H]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
I [auth H]IPR000235Small ribosomal subunit protein uS7Family
I [auth H]IPR026018Small ribosomal subunit protein uS7, archaealFamily
I [auth H]IPR023798Small ribosomal subunit protein uS7 domainDomain
I [auth H]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily