9FU0 | pdb_00009fu0

CIII2/CIV respiratory chain supercomplex from Mycobacterium smegmatis

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
E [auth S]SCOP2B SuperfamilyCytochrome c oxidase subunit III-like 8075786 3000671 SCOP2B (2022-06-29)
G [auth R]SCOP2B SuperfamilyCytochrome c oxidase subunit I-like 8097008 3000653 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth O]PF13442Cytochrome C oxidase, cbb3-type, subunit III (Cytochrome_CBB3)Cytochrome C oxidase, cbb3-type, subunit IIIDomain
A [auth O]PF00034Cytochrome c (Cytochrom_C)Cytochrome cThe Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, Pfam:PF06181, has now been merged into this family. Domain
B [auth M],
N [auth G]		PF00355Rieske [2Fe-2S] domain (Rieske)Rieske [2Fe-2S] domainThe rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in ...The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in this motif form a disulphide bridge, which stabilises the protein [4].
Domain
C [auth N],
M [auth H]		PF13631Cytochrome b(N-terminal)/b6/petB (Cytochrom_B_N_2)Cytochrome b(N-terminal)/b6/petBDomain
F [auth T]PF12270Cytochrome c oxidase subunit IV (Cyt_c_ox_IV)Cytochrome c oxidase subunit IV- Family
G [auth R]PF00115Cytochrome C and Quinol oxidase polypeptide I (COX1)Cytochrome C and Quinol oxidase polypeptide I- Family
H [auth Q]PF00116Cytochrome C oxidase subunit II, periplasmic domain (COX2)Cytochrome C oxidase subunit II, periplasmic domainDomain
J [auth V]PF17174Domain of unknown function (DUF5130) (DUF5130)Domain of unknown function (DUF5130)- Family
K [auth W]PF04314Copper chaperone PCu(A)C domain (PCuAC)Copper chaperone PCu(A)C domainPCu(A)C is a periplasmic copper chaperone. Its role may be to capture and transfer copper to two other copper chaperones, PrrC and Cox11, which in turn deliver Cu(I) to cytochrome c oxidase [1]. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth O]Cytochrome bc1 complex cytochrome c subunit -
B [auth M],
N [auth G]		Cytochrome bc1 complex cytochrome c subunit -
C [auth N],
M [auth H]		Cytochrome bc1 complex cytochrome b subunit
D [auth P]Transmembrane protein- -
E [auth S]Probable cytochrome c oxidase subunit 3
F [auth T]Cytochrome c oxidase polypeptide 4
G [auth R]Cytochrome c oxidase subunit 1
H [auth Q]cytochrome-c oxidase
I [auth U]Cytochrome c oxidase subunit- -
J [auth V]Uncharacterized protein MSMEG_4692/MSMEI_4575- - -
K [auth W]LpqE protein- - -
L [auth Y],
O [auth c]		Superoxide dismutase [Cu-Zn] - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth O]IPR009152Cytochrome bc1 complex, cytochrome c subunitFamily
A [auth O]IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
A [auth O]IPR050597Cytochrome c Oxidase SubunitFamily
A [auth O]IPR009056Cytochrome c-like domainDomain
B [auth M],
N [auth G]		IPR017941Rieske [2Fe-2S] iron-sulphur domainDomain
B [auth M],
N [auth G]		IPR045603QcrA subunit, N-terminalDomain
B [auth M],
N [auth G]		IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilyHomologous Superfamily
B [auth M],
N [auth G]		IPR014349Rieske iron-sulphur proteinFamily
C [auth N],
M [auth H]		IPR027387Cytochrome b/b6-like domain superfamilyHomologous Superfamily
C [auth N],
M [auth H]		IPR016174Di-haem cytochrome, transmembraneHomologous Superfamily
C [auth N],
M [auth H]		IPR005797Cytochrome b/b6, N-terminal domainDomain
D [auth P]IPR024341Protein of unknown function DUF2631Family
E [auth S]IPR035973Cytochrome c oxidase subunit III-like superfamilyHomologous Superfamily
E [auth S]IPR013833Cytochrome c oxidase, subunit III, 4-helical bundleHomologous Superfamily
E [auth S]IPR000298Cytochrome c oxidase subunit III-likeDomain
E [auth S]IPR024791Cytochrome c oxidase subunit IIIFamily
F [auth T]IPR021050Cytochrome c oxidase subunit IV, actinobacteriaFamily
G [auth R]IPR036927Cytochrome c oxidase-like, subunit I superfamilyHomologous Superfamily
G [auth R]IPR000883Cytochrome c oxidase subunit IFamily
G [auth R]IPR023615Cytochrome c oxidase, subunit I, copper-binding siteBinding Site
G [auth R]IPR023616Cytochrome c oxidase-like, subunit I domainDomain
G [auth R]IPR014241Cytochrome c oxidase, subunit I bacterial typeFamily
H [auth Q]IPR002429Cytochrome c oxidase subunit II-like C-terminalDomain
H [auth Q]IPR036257Cytochrome C oxidase subunit II, transmembrane domain superfamilyHomologous Superfamily
H [auth Q]IPR008972CupredoxinHomologous Superfamily
H [auth Q]IPR001505Copper centre Cu(A)Binding Site
H [auth Q]IPR045187Cytochrome c/quinol oxidase subunit IIFamily
J [auth V]IPR033437Protein of unknown function DUF5130Family
L [auth Y],
O [auth c]		IPR036423Superoxide dismutase-like, copper/zinc binding domain superfamilyHomologous Superfamily
L [auth Y],
O [auth c]		IPR018152Superoxide dismutase, copper/zinc, binding siteBinding Site
L [auth Y],
O [auth c]		IPR001424Superoxide dismutase, copper/zinc binding domainDomain

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
MemProtMDAnnotated as membrane protein by MemProtMD