9GB2 | pdb_00009gb2

Extended phiCD508 baseplate

External Resource: Annotation

Protein Family Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
M, N, O, P, Q M, N, O, P, Q, R	PF10934	Contractile injection system sheath initiator (Sheath_initiator)	Contractile injection system sheath initiator	-	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF26079	Baseplate J-like protein C-terminal domain (Baseplate_J_C)	Baseplate J-like protein C-terminal domain	The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred. This entry represents a C-terminal domain found in these protein.	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF26078	Baseplate J-like central domain (Baseplate_J_M)	Baseplate J-like central domain	The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred. This entry represents a domain found in baseplate J-like proteins. ...	The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred. This entry represents a domain found in baseplate J-like proteins.	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF10934	Contractile injection system sheath initiator (Sheath_initiator)	Contractile injection system sheath initiator	-	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF04865	Baseplate J-like protein barrel domain (Baseplate_J)	Baseplate J-like protein barrel domain	The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred. This entry represents a six stranded beta barrel domain found in va ...	The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred. This entry represents a six stranded beta barrel domain found in various baseplate J-like proteins.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
KA [auth k], LA [auth l], MA [auth m], NA [auth n], OA [auth o], KA [auth k], LA [auth l], MA [auth m], NA [auth n], OA [auth o], PA [auth p]	IPR020288	Contractile injection system sheath initiator	Family
EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], JA [auth j]	IPR020287	Tail sheath protein, C-terminal domain	Domain
EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], JA [auth j]	IPR035089	Tail sheath protein, subtilisin-like domain	Domain
EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], JA [auth j]	IPR035326	Phage tail sheath protein-like, beta-sandwich domain	Domain
AA [auth a], BA [auth b], CA [auth c], DA [auth d], Y, AA [auth a], BA [auth b], CA [auth c], DA [auth d], Y, Z	IPR018989	Phage tail tube protein	Family
AA [auth a], BA [auth b], CA [auth c], DA [auth d], Y, AA [auth a], BA [auth b], CA [auth c], DA [auth d], Y, Z	IPR038628	XkdM-like superfamily	Homologous Superfamily
S, T, U, V, W S, T, U, V, W, X	IPR036779	LysM domain superfamily	Homologous Superfamily
S, T, U, V, W S, T, U, V, W, X	IPR052196	Bacterial Potassium Binding	Family
S, T, U, V, W S, T, U, V, W, X	IPR018392	LysM domain	Domain
M, N, O, P, Q M, N, O, P, Q, R	IPR018755	Bacteriophage Mu-like, Gp48	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR052399	Phage Baseplate Assembly Protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR006949	Baseplate protein J-like, barrel domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.