9GI1 | pdb_00009gi1

Structure of the S.aureus MecA/ClpC/ClpP degradation system

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
N [auth Pq]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
M [auth Po]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
L [auth Pn]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
K [auth Pm]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
J [auth Pl]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
I [auth Pi]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
H [auth Ph]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
G [auth Pg]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
F [auth Pf]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
E [auth Pe]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
D [auth Pd]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
C [auth Pc]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
B [auth Pb]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
A [auth Pa]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
U [auth f]	Beta-Casp	e9gi1f1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
T [auth e]	Beta-Casp	e9gi1e1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
S [auth d]	Beta-Casp	e9gi1d1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
R [auth c]	Beta-Casp	e9gi1c1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
Q [auth b]	Beta-Casp	e9gi1b1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
P [auth a]	Beta-Casp	e9gi1a1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
N [auth Pq]	Beta-Casp	e9gi1Pq1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
M [auth Po]	Beta-Casp	e9gi1Po1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
L [auth Pn]	Beta-Casp	e9gi1Pn1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
K [auth Pm]	Beta-Casp	e9gi1Pm1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
J [auth Pl]	Beta-Casp	e9gi1Pl1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
I [auth Pi]	Beta-Casp	e9gi1Pi1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
H [auth Ph]	Beta-Casp	e9gi1Ph1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
G [auth Pg]	Beta-Casp	e9gi1Pg1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
F [auth Pf]	Beta-Casp	e9gi1Pf1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
E [auth Pe]	Beta-Casp	e9gi1Pe1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
D [auth Pd]	Beta-Casp	e9gi1Pd1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
C [auth Pc]	Beta-Casp	e9gi1Pc1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
B [auth Pb]	Beta-Casp	e9gi1Pb1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
A [auth Pa]	Beta-Casp	e9gi1Pa1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], U [auth f]	ATP-dependent Clp protease ATP-binding subunit ClpC	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity protein folding chaperone	response to copper ion response to stimulus response to metal ion response to chemical response to stress stress response to copper ion stress response to metal ion stress response to cadmium ion response to cadmium ion	-
O [auth S]	Unidentified substrate of the MecA-ClpC-ClpP complex from S.aureus	-	-	-
A [auth Pa], B [auth Pb], C [auth Pc], D [auth Pd], E [auth Pe], A [auth Pa], B [auth Pb], C [auth Pc], D [auth Pd], E [auth Pe], F [auth Pf], G [auth Pg], H [auth Ph], I [auth Pi], J [auth Pl], K [auth Pm], L [auth Pn], M [auth Po], N [auth Pq]	ATP-dependent Clp protease proteolytic subunit	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity ATP-dependent peptidase activity ATP-dependent activity ATPase binding protein binding binding enzyme binding peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity ATP-dependent peptidase activity ATP-dependent activity ATPase binding protein binding binding enzyme binding identical protein binding	catabolic process metabolic process cellular process primary metabolic process protein catabolic process protein metabolic process macromolecule metabolic process protein quality control for misfolded or incompletely synthesized proteins macromolecule catabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm endopeptidase Clp complex protein-containing complex catalytic complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], U [auth f]	IPR001270	ClpA/B family	Family
P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], U [auth f]	IPR018368	ClpA/B, conserved site 1	Conserved Site
P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], U [auth f]	IPR041546	ClpA/ClpB, AAA lid domain	Domain
P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], U [auth f]	IPR004176	Clp, repeat (R) N-terminal domain	Domain
P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], U [auth f]	IPR050130	ATP-dependent Clp protease/Chaperone ClpA/ClpB	Family
P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], U [auth f]	IPR028299	ClpA/B, conserved site 2	Conserved Site
P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], U [auth f]	IPR003593	AAA+ ATPase domain	Domain
P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], U [auth f]	IPR003959	ATPase, AAA-type, core	Domain
P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], U [auth f]	IPR001943	UVR domain	Domain
P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], U [auth f]	IPR019489	Clp ATPase, C-terminal	Domain
P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], U [auth f]	IPR036628	Clp, N-terminal domain superfamily	Homologous Superfamily
P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], P [auth a], Q [auth b], R [auth c], S [auth d], T [auth e], U [auth f]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A [auth Pa], B [auth Pb], C [auth Pc], D [auth Pd], E [auth Pe], A [auth Pa], B [auth Pb], C [auth Pc], D [auth Pd], E [auth Pe], F [auth Pf], G [auth Pg], H [auth Ph], I [auth Pi], J [auth Pl], K [auth Pm], L [auth Pn], M [auth Po], N [auth Pq]	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
A [auth Pa], B [auth Pb], C [auth Pc], D [auth Pd], E [auth Pe], A [auth Pa], B [auth Pb], C [auth Pc], D [auth Pd], E [auth Pe], F [auth Pf], G [auth Pg], H [auth Ph], I [auth Pi], J [auth Pl], K [auth Pm], L [auth Pn], M [auth Po], N [auth Pq]	IPR001907	ATP-dependent Clp protease proteolytic subunit	Family
A [auth Pa], B [auth Pb], C [auth Pc], D [auth Pd], E [auth Pe], A [auth Pa], B [auth Pb], C [auth Pc], D [auth Pd], E [auth Pe], F [auth Pf], G [auth Pg], H [auth Ph], I [auth Pi], J [auth Pl], K [auth Pm], L [auth Pn], M [auth Po], N [auth Pq]	IPR018215	ClpP, Ser active site	Active Site
A [auth Pa], B [auth Pb], C [auth Pc], D [auth Pd], E [auth Pe], A [auth Pa], B [auth Pb], C [auth Pc], D [auth Pd], E [auth Pe], F [auth Pf], G [auth Pg], H [auth Ph], I [auth Pi], J [auth Pl], K [auth Pm], L [auth Pn], M [auth Po], N [auth Pq]	IPR033135	ClpP, histidine active site	Active Site
A [auth Pa], B [auth Pb], C [auth Pc], D [auth Pd], E [auth Pe], A [auth Pa], B [auth Pb], C [auth Pc], D [auth Pd], E [auth Pe], F [auth Pf], G [auth Pg], H [auth Ph], I [auth Pi], J [auth Pl], K [auth Pm], L [auth Pn], M [auth Po], N [auth Pq]	IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.