Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth H]SCOP2B SuperfamilyL9 N-domain-like 8032960 3000338 SCOP2B (2022-06-29)
K [auth J]SCOP2B SuperfamilyRibosomal protein L13 8096350 3001134 SCOP2B (2022-06-29)
L [auth K]SCOP2B Superfamily50S Ribosomal protein L14-like 8103358 3000433 SCOP2B (2022-06-29)
M [auth L]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8070553 3001045 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyProkaryotic ribosomal protein L17 8035409 3000995 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyTranslational machinery components 8032969 3000571 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096364 3000334 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyRibosomal protein L20 8096382 3000563 SCOP2B (2022-06-29)
RSCOP2B Superfamilyl21p-like 8096354 3002005 SCOP2B (2022-06-29)
S [auth T]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8035415 3000210 SCOP2B (2022-06-29)
T [auth U]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096358 3000334 SCOP2B (2022-06-29)
U [auth V]SCOP2B SuperfamilyRibosomal protein L25-like 8042538 3001161 SCOP2B (2022-06-29)
V [auth W]SCOP2B SuperfamilyRibosomal L27 protein-like 8096338 3000539 SCOP2B (2022-06-29)
W [auth X]SCOP2B SuperfamilyL28p-like 8035424 3001966 SCOP2B (2022-06-29)
X [auth Y]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8096370 3000713 SCOP2B (2022-06-29)
Y [auth Z]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8096372 3001378 SCOP2B (2022-06-29)
C [auth 4]SCOP2B SuperfamilyRibosomal protein L36 8035391 3001346 SCOP2B (2022-06-29)
F [auth D]SCOP2B SuperfamilyTranslational proteins 8032955 3000811 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyRibosomal protein L4 8096356 3001146 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyRL5-like 8096352 3001709 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyRibosomal protein L6 8035397 3000724 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyRibosomal protein L6 8035398 3000724 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth H]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domainDomain
K [auth J]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
L [auth K]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
M [auth L]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
S [auth T]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
T [auth U]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
T [auth U]PF00467KOW motif (KOW)KOW motif- Family
U [auth V]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. Domain
V [auth W]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
W [auth X]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
X [auth Y]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
Y [auth Z]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
C [auth 4]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36Domain
F [auth D]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
G [auth E]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
H [auth F]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
H [auth F]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
I [auth G]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth C]UPF0307 protein YjgA
J [auth H]Large ribosomal subunit protein bL9
K [auth J]Large ribosomal subunit protein uL13
L [auth K]Large ribosomal subunit protein uL14
M [auth L]Large ribosomal subunit protein uL15
Large ribosomal subunit protein bL17
Large ribosomal subunit protein uL18
Large ribosomal subunit protein bL19
Large ribosomal subunit protein bL20
Large ribosomal subunit protein bL21
S [auth T]Large ribosomal subunit protein uL23
B [auth 2]Large ribosomal subunit protein bL34
T [auth U]Large ribosomal subunit protein uL24
U [auth V]Large ribosomal subunit protein bL25
V [auth W]Large ribosomal subunit protein bL27
W [auth X]Large ribosomal subunit protein bL28
X [auth Y]Large ribosomal subunit protein uL29
Y [auth Z]Large ribosomal subunit protein uL30
C [auth 4]Large ribosomal subunit protein bL36A
D [auth A]23S ribosomal RNA---
E [auth B]5S ribosomal RNA---
F [auth D]50S ribosomal protein L3
G [auth E]Large ribosomal subunit protein uL4
H [auth F]Large ribosomal subunit protein uL5
I [auth G]Large ribosomal subunit protein uL6

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth C]IPR023153Dual-action ribosomal maturation protein DarP superfamilyHomologous Superfamily
A [auth C]IPR006839Dual-action ribosomal maturation protein DarPFamily
J [auth H]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
J [auth H]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
J [auth H]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
J [auth H]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
J [auth H]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
J [auth H]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
J [auth H]IPR000244Large ribosomal subunit protein bL9Family
K [auth J]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
K [auth J]IPR005822Large ribosomal subunit protein uL13Family
K [auth J]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
K [auth J]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
L [auth K]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
L [auth K]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
L [auth K]IPR000218Large ribosomal subunit protein uL14Family
L [auth K]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
M [auth L]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
M [auth L]IPR021131Large ribosomal subunit protein uL15/eL18Domain
M [auth L]IPR030878Large ribosomal subunit protein uL15Family
M [auth L]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
M [auth L]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
IPR000456Large ribosomal subunit protein bL17Family
IPR005484Large ribosomal subunit protein uL18Family
IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
IPR001857Large ribosomal subunit protein bL19Family
IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
IPR005813Large ribosomal subunit protein bL20Family
IPR028909Large ribosomal subunit protein bL21-likeFamily
IPR001787Large ribosomal subunit protein bL21Family
IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
S [auth T]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
S [auth T]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
S [auth T]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
S [auth T]IPR013025Large ribosomal subunit protein uL23-likeFamily
B [auth 2]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
B [auth 2]IPR000271Large ribosomal subunit protein bL34Family
T [auth U]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
T [auth U]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
T [auth U]IPR003256Large ribosomal subunit protein uL24Family
T [auth U]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
T [auth U]IPR005824KOWDomain
T [auth U]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
U [auth V]IPR020055Ribosomal protein bL25, short-formFamily
U [auth V]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
U [auth V]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
U [auth V]IPR050070Bacterial ribosomal protein bL25Family
U [auth V]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
V [auth W]IPR001684Large ribosomal subunit protein bL27Family
V [auth W]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
W [auth X]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
W [auth X]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
W [auth X]IPR026569Large ribosomal subunit protein bL28Family
W [auth X]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
X [auth Y]IPR050063Universal ribosomal protein uL29Family
X [auth Y]IPR001854Large ribosomal subunit protein uL29Family
X [auth Y]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
X [auth Y]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
Y [auth Z]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
Y [auth Z]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
Y [auth Z]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
Y [auth Z]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
C [auth 4]IPR000473Large ribosomal subunit protein bL36Family
C [auth 4]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
F [auth D]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
F [auth D]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
F [auth D]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
F [auth D]IPR000597Large ribosomal subunit protein uL3Family
G [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
G [auth E]IPR002136Large ribosomal subunit protein uL4Family
G [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
H [auth F]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
H [auth F]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
H [auth F]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
H [auth F]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
H [auth F]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
H [auth F]IPR002132Large ribosomal subunit protein uL5Family
I [auth G]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
I [auth G]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
I [auth G]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
I [auth G]IPR000702Large ribosomal subunit protein uL6-likeFamily
I [auth G]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site