9HA4

Pooled 50S subunit C-CP_(L22)- precursor states supplemented with Api137


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth Q]SCOP2B SuperfamilyRibosomal protein L20 8096382 3000563 SCOP2B (2022-06-29)
K [auth R]SCOP2B Superfamilyl21p-like 8096354 3002005 SCOP2B (2022-06-29)
L [auth T]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8035415 3000210 SCOP2B (2022-06-29)
M [auth U]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096358 3000334 SCOP2B (2022-06-29)
N [auth V]SCOP2B SuperfamilyRibosomal protein L25-like 8042538 3001161 SCOP2B (2022-06-29)
O [auth W]SCOP2B SuperfamilyRibosomal L27 protein-like 8096338 3000539 SCOP2B (2022-06-29)
P [auth Y]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8096370 3000713 SCOP2B (2022-06-29)
Q [auth Z]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8096372 3001378 SCOP2B (2022-06-29)
T [auth E]SCOP2B SuperfamilyRibosomal protein L4 8096356 3001146 SCOP2B (2022-06-29)
U [auth L]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8070553 3001045 SCOP2B (2022-06-29)
D [auth F]SCOP2B SuperfamilyRL5-like 8096352 3001709 SCOP2B (2022-06-29)
E [auth J]SCOP2B SuperfamilyRibosomal protein L13 8096350 3001134 SCOP2B (2022-06-29)
F [auth K]SCOP2B Superfamily50S Ribosomal protein L14-like 8103358 3000433 SCOP2B (2022-06-29)
G [auth N]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8035409 3000995 SCOP2B (2022-06-29)
H [auth O]SCOP2B SuperfamilyTranslational machinery components 8032969 3000571 SCOP2B (2022-06-29)
I [auth P]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096364 3000334 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth Q]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
K [auth R]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
L [auth T]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
M [auth U]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
M [auth U]PF00467KOW motif (KOW)KOW motif- Family
N [auth V]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. Domain
P [auth Y]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
P [auth Y]PF00807Apidaecin (Apidaecin)Apidaecin- Family
Q [auth Z]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
T [auth E]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
U [auth L]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
C [auth D]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
D [auth F]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
D [auth F]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
E [auth J]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
F [auth K]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
G [auth N]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
H [auth O]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
I [auth P]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 2]Large ribosomal subunit protein bL34
J [auth Q]Large ribosomal subunit protein bL20
K [auth R]Large ribosomal subunit protein bL21
L [auth T]Large ribosomal subunit protein uL23
M [auth U]Large ribosomal subunit protein uL24
N [auth V]Large ribosomal subunit protein bL25
O [auth W]Large ribosomal subunit protein bL27
P [auth Y]Large ribosomal subunit protein uL29
Q [auth Z]Large ribosomal subunit protein uL30
R [auth y]Apidaecins type 22-
S [auth A]23S ribosomal RNA---
5S ribosomal RNA---
T [auth E]Large ribosomal subunit protein uL4
U [auth L]Large ribosomal subunit protein uL15
C [auth D]50S ribosomal protein L3
D [auth F]Large ribosomal subunit protein uL5
E [auth J]Large ribosomal subunit protein uL13
F [auth K]Large ribosomal subunit protein uL14
G [auth N]Large ribosomal subunit protein bL17
H [auth O]Large ribosomal subunit protein uL18
I [auth P]Large ribosomal subunit protein bL19

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 2]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
A [auth 2]IPR000271Large ribosomal subunit protein bL34Family
J [auth Q]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
J [auth Q]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
J [auth Q]IPR005813Large ribosomal subunit protein bL20Family
K [auth R]IPR028909Large ribosomal subunit protein bL21-likeFamily
K [auth R]IPR001787Large ribosomal subunit protein bL21Family
K [auth R]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
K [auth R]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
L [auth T]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
L [auth T]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
L [auth T]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
L [auth T]IPR013025Large ribosomal subunit protein uL23-likeFamily
M [auth U]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
M [auth U]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
M [auth U]IPR003256Large ribosomal subunit protein uL24Family
M [auth U]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
M [auth U]IPR005824KOWDomain
M [auth U]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
N [auth V]IPR020055Ribosomal protein bL25, short-formFamily
N [auth V]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
N [auth V]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
N [auth V]IPR050070Bacterial ribosomal protein bL25Family
N [auth V]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
O [auth W]IPR001684Large ribosomal subunit protein bL27Family
O [auth W]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
P [auth Y]IPR050063Universal ribosomal protein uL29Family
P [auth Y]IPR001854Large ribosomal subunit protein uL29Family
P [auth Y]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
P [auth Y]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
Q [auth Z]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
Q [auth Z]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
Q [auth Z]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
Q [auth Z]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
R [auth y]IPR004828ApidaecinRepeat
T [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
T [auth E]IPR002136Large ribosomal subunit protein uL4Family
T [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
U [auth L]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
U [auth L]IPR021131Large ribosomal subunit protein uL15/eL18Domain
U [auth L]IPR030878Large ribosomal subunit protein uL15Family
U [auth L]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
U [auth L]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
C [auth D]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
C [auth D]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
C [auth D]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
C [auth D]IPR000597Large ribosomal subunit protein uL3Family
D [auth F]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
D [auth F]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
D [auth F]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
D [auth F]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
D [auth F]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
D [auth F]IPR002132Large ribosomal subunit protein uL5Family
E [auth J]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
E [auth J]IPR005822Large ribosomal subunit protein uL13Family
E [auth J]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
E [auth J]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
F [auth K]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
F [auth K]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
F [auth K]IPR000218Large ribosomal subunit protein uL14Family
F [auth K]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
G [auth N]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
G [auth N]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
G [auth N]IPR000456Large ribosomal subunit protein bL17Family
H [auth O]IPR005484Large ribosomal subunit protein uL18Family
H [auth O]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
I [auth P]IPR001857Large ribosomal subunit protein bL19Family
I [auth P]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
I [auth P]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
I [auth P]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily