9I83 | pdb_00009i83

Cryo-EM structure of PSII intermediate Psb32-PSII


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
H [auth I]PF02532Photosystem II reaction centre I protein (PSII 4.8 kDa protein) (PsbI)Photosystem II reaction centre I protein (PSII 4.8 kDa protein)- Family
G [auth H]PF00737Photosystem II 10 kDa phosphoprotein (PsbH)Photosystem II 10 kDa phosphoprotein- Family
PF00284Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit (Cytochrom_B559a)Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit- Family
PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
PF00421Photosystem II protein (PSII)Photosystem II protein- Family
S [auth 3]PF04536TPM domain (TPM_phosphatase)TPM domainThis family was first named TPM domain after its founding proteins: TLP18.3, Psb32 and MOLO-1. In Arabidopsis, this domain is called the thylakoid acid phosphatase -TAP - domain and has a Rossmann-like fold [1]. In plants, the family resides in the t ...This family was first named TPM domain after its founding proteins: TLP18.3, Psb32 and MOLO-1. In Arabidopsis, this domain is called the thylakoid acid phosphatase -TAP - domain and has a Rossmann-like fold [1]. In plants, the family resides in the thylakoid lumen attached to the outer membrane of the chloroplast/plastid. It is active in the photosystem II [2,3].
Domain
Q [auth Z]PF01737YCF9 (Ycf9)YCF9- Family
O [auth X]PF06596Photosystem II reaction centre X protein (PsbX) (PsbX)Photosystem II reaction centre X protein (PsbX)- Family
N [auth V]PF14495Cytochrome c-550 domain (Cytochrom_C550)Cytochrome c-550 domainThis domain is a heme binding cytochrome known as cytochrome c550, or cytochrome c549, or PsbV [1]. Domain
M [auth T]PF01405Photosystem II reaction centre T protein (PsbT)Photosystem II reaction centre T proteinThe exact function of this protein is unknown. It probably consists of a single transmembrane spanning helix. The Swiss:P37256 protein, appears to be (i) a novel photosystem II subunit and (ii) required for maintaining optimal photosystem II activity ...The exact function of this protein is unknown. It probably consists of a single transmembrane spanning helix. The Swiss:P37256 protein, appears to be (i) a novel photosystem II subunit and (ii) required for maintaining optimal photosystem II activity under adverse growth conditions [1].
Domain
L [auth M]PF05151Photosystem II reaction centre M protein (PsbM) (PsbM)Photosystem II reaction centre M protein (PsbM)- Family
K [auth L]PF02419PsbL protein (PsbL)PsbL protein- Family
PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth J]Photosystem II reaction center protein J-
H [auth I]Photosystem II reaction center protein I-
G [auth H]Photosystem II reaction center protein H
Cytochrome b559 subunit beta
Cytochrome b559 subunit alpha
Photosystem II D2 protein
Photosystem II CP43 reaction center protein
Photosystem II CP47 reaction center protein
S [auth 3]Tll0404 protein- - -
R [auth 1]Photosystem II lipoprotein Psb27-
Q [auth Z]Photosystem II reaction center protein Z-
P [auth Y]Photosystem II reaction center protein Ycf12-
O [auth X]Photosystem II reaction center X protein-
N [auth V]Cytochrome c-550
M [auth T]Photosystem II reaction center protein T-
L [auth M]Photosystem II reaction center protein M-
K [auth L]Photosystem II reaction center protein L-
J [auth K]Photosystem II reaction center protein K-
Photosystem II protein D1 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth J]IPR002682Photosystem II PsbJFamily
I [auth J]IPR037267Photosystem II PsbJ superfamilyHomologous Superfamily
H [auth I]IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
H [auth I]IPR003686Photosystem II PsbIFamily
G [auth H]IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
G [auth H]IPR001056Photosystem II reaction centre protein HFamily
IPR006241Photosystem II cytochrome b559, beta subunitFamily
IPR013081Photosystem II cytochrome b559, N-terminalDomain
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
IPR013081Photosystem II cytochrome b559, N-terminalDomain
IPR006217Photosystem II cytochrome b559, alpha subunitFamily
IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
IPR005868Photosystem II D2Family
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
IPR000484Photosynthetic reaction centre, L/MFamily
IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
IPR055266Photosystem II protein D1/D2Family
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
IPR000932Photosystem antenna protein-likeFamily
IPR005869Photosystem II CP43 reaction centre proteinFamily
IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
IPR000932Photosystem antenna protein-likeFamily
IPR017486Photosystem II CP47 reaction centre proteinFamily
S [auth 3]IPR007621TPM domainDomain
R [auth 1]IPR025585Photosystem II Psb27Family
R [auth 1]IPR038450Photosystem II Psb27 superfamilyHomologous Superfamily
R [auth 1]IPR017488Photosystem II Psb27, cyanobacteriaFamily
Q [auth Z]IPR036512Photosystem II PsbZ superfamilyHomologous Superfamily
Q [auth Z]IPR002644Photosystem II PsbZ, reaction centreFamily
P [auth Y]IPR010284Photosystem II reaction center protein Ycf12Family
O [auth X]IPR009518Photosystem II PsbXFamily
O [auth X]IPR023431Photosystem II PsbX, type 1 subfamilyFamily
N [auth V]IPR017851Photosystem II extrinsic protein V, cytochrome c-550 precursorFamily
N [auth V]IPR016003Photosystem II extrinsic protein V, cytochrome c-550 precursor-likeFamily
N [auth V]IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
N [auth V]IPR009056Cytochrome c-like domainDomain
N [auth V]IPR029490Cytochrome c-550 domainDomain
M [auth T]IPR001743Photosystem II PsbTFamily
M [auth T]IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
L [auth M]IPR007826Photosystem II PsbMFamily
L [auth M]IPR037269Photosystem II PsbM superfamilyHomologous Superfamily
K [auth L]IPR003372Photosystem II PsbLFamily
K [auth L]IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
J [auth K]IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
J [auth K]IPR003687Photosystem II PsbKFamily
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
IPR005867Photosystem II protein D1Family
IPR000484Photosynthetic reaction centre, L/MFamily
IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
IPR055266Photosystem II protein D1/D2Family