Annotations: 9QDI

Crystal structure of BF3526 peptidase from Bacteroides fragilis in complex with a peptide

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	Metalloproteases (zincins), catalytic domain	8053827	3001975	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	IgA peptidase N-terminal domain-like	8053830	3002233	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	IgA peptidase N-terminal domain-like	8053830	3002233	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Metalloproteases (zincins), catalytic domain	8053827	3001975	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Metalloproteases (zincins), catalytic domain	8053827	3001975	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	IgA peptidase N-terminal domain-like	8053830	3002233	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	IgA peptidase N-terminal domain-like	8053830	3002233	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Metalloproteases (zincins), catalytic domain	8053827	3001975	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Metalloproteases (zincins), catalytic domain	8053827	3001975	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	IgA peptidase N-terminal domain-like	8053830	3002233	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	IgA peptidase N-terminal domain-like	8053830	3002233	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Metalloproteases (zincins), catalytic domain	8053827	3001975	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	IgA peptidase N-terminal domain-like	8053830	3002233	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Metalloproteases (zincins), catalytic domain	8053827	3001975	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	IgA peptidase N-terminal domain-like	8053830	3002233	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Metalloproteases (zincins), catalytic domain	8053827	3001975	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	RVP	e9qdiH1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
G	RVP	e9qdiG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
F	RVP	e9qdiF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
E	RVP	e9qdiE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
D	RVP	e9qdiD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
C	RVP	e9qdiC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
B	RVP	e9qdiB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
A	RVP	e9qdiA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Lipoprotein	peptidase activity catalytic activity, acting on a protein metallopeptidase activity hydrolase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	-	-
I, J, K, L	Synthetic peptide SER-THR-PRO-PRO	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR038171	Peptidase M64, N-terminal domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR024079	Metallopeptidase, catalytic domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR032625	Peptidase M64, N-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR019026	Peptidase M64, IgA	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9QDI | pdb_00009qdi

Crystal structure of BF3526 peptidase from Bacteroides fragilis in complex with a peptide

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage