9R2S | pdb_00009r2s

Structure of the S.aureus ClpP degradation chamber in the context of the MecA/ClpC/CLpC complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
N [auth Pl]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
M [auth Ph]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
L [auth Pm]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
K [auth Pn]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
J [auth Pi]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
I [auth Pq]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
H [auth Pf]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
G [auth Po]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
F [auth Pg]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
E [auth Pd]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
D [auth Pc]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
C [auth Pa]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
B [auth Pe]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)
A [auth Pb]	SCOP2B Superfamily	ClpP/crotonase	8068479	3000033	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
N [auth Pl]	RVP	e9r2sPl1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
M [auth Ph]	RVP	e9r2sPh1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
L [auth Pm]	RVP	e9r2sPm1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
K [auth Pn]	RVP	e9r2sPn1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
J [auth Pi]	RVP	e9r2sPi1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
I [auth Pq]	RVP	e9r2sPq1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
H [auth Pf]	RVP	e9r2sPf1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
G [auth Po]	RVP	e9r2sPo1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
F [auth Pg]	RVP	e9r2sPg1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
E [auth Pd]	RVP	e9r2sPd1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
D [auth Pc]	RVP	e9r2sPc1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
C [auth Pa]	RVP	e9r2sPa1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
B [auth Pe]	RVP	e9r2sPe1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
A [auth Pb]	RVP	e9r2sPb1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth Pb], B [auth Pe], C [auth Pa], D [auth Pc], E [auth Pd], A [auth Pb], B [auth Pe], C [auth Pa], D [auth Pc], E [auth Pd], F [auth Pg], G [auth Po], H [auth Pf], I [auth Pq], J [auth Pi], K [auth Pn], L [auth Pm], M [auth Ph], N [auth Pl]	ATP-dependent Clp protease proteolytic subunit	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity ATP-dependent peptidase activity ATP-dependent activity ATPase binding protein binding binding enzyme binding peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity ATP-dependent peptidase activity ATP-dependent activity ATPase binding protein binding binding enzyme binding identical protein binding	catabolic process metabolic process cellular process primary metabolic process protein catabolic process protein metabolic process macromolecule metabolic process protein quality control for misfolded or incompletely synthesized proteins macromolecule catabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm endopeptidase Clp complex protein-containing complex catalytic complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth Pb], B [auth Pe], C [auth Pa], D [auth Pc], E [auth Pd], A [auth Pb], B [auth Pe], C [auth Pa], D [auth Pc], E [auth Pd], F [auth Pg], G [auth Po], H [auth Pf], I [auth Pq], J [auth Pi], K [auth Pn], L [auth Pm], M [auth Ph], N [auth Pl]	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
A [auth Pb], B [auth Pe], C [auth Pa], D [auth Pc], E [auth Pd], A [auth Pb], B [auth Pe], C [auth Pa], D [auth Pc], E [auth Pd], F [auth Pg], G [auth Po], H [auth Pf], I [auth Pq], J [auth Pi], K [auth Pn], L [auth Pm], M [auth Ph], N [auth Pl]	IPR001907	ATP-dependent Clp protease proteolytic subunit	Family
A [auth Pb], B [auth Pe], C [auth Pa], D [auth Pc], E [auth Pd], A [auth Pb], B [auth Pe], C [auth Pa], D [auth Pc], E [auth Pd], F [auth Pg], G [auth Po], H [auth Pf], I [auth Pq], J [auth Pi], K [auth Pn], L [auth Pm], M [auth Ph], N [auth Pl]	IPR018215	ClpP, Ser active site	Active Site
A [auth Pb], B [auth Pe], C [auth Pa], D [auth Pc], E [auth Pd], A [auth Pb], B [auth Pe], C [auth Pa], D [auth Pc], E [auth Pd], F [auth Pg], G [auth Po], H [auth Pf], I [auth Pq], J [auth Pi], K [auth Pn], L [auth Pm], M [auth Ph], N [auth Pl]	IPR033135	ClpP, histidine active site	Active Site
A [auth Pb], B [auth Pe], C [auth Pa], D [auth Pc], E [auth Pd], A [auth Pb], B [auth Pe], C [auth Pa], D [auth Pc], E [auth Pd], F [auth Pg], G [auth Po], H [auth Pf], I [auth Pq], J [auth Pi], K [auth Pn], L [auth Pm], M [auth Ph], N [auth Pl]	IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.