Annotations: 9RQM

GT-C O-Mannosyltransferase TMEM260 co-purified with natural donor and in complex with acceptor peptide

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF11028	Protein O-mannosyl-transferase TMEM260 N-terminal domain (TMEM260_N)	Protein O-mannosyl-transferase TMEM260 N-terminal domain	This entry includes human Protein O-mannosyl-transferase TMEM260 and similar sequences from bacteria and eukaryota. TMEM260 transfers mannosyl residues to the hydroxyl group of serine or threonine residues of proteins [1]. This entry represents the t ...	This entry includes human Protein O-mannosyl-transferase TMEM260 and similar sequences from bacteria and eukaryota. TMEM260 transfers mannosyl residues to the hydroxyl group of serine or threonine residues of proteins [1]. This entry represents the transmembrane region.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Plexin-B2	molecular transducer activity signaling receptor activity transmembrane signaling receptor activity semaphorin receptor activity	developmental process multicellular organismal process nervous system development excitatory synapse assembly cellular component organization cellular component biogenesis multicellular organism development cell junction organization cellular component assembly cell junction assembly anatomical structure development cellular process synapse organization cellular component organization or biogenesis developmental process multicellular organismal process nervous system development excitatory synapse assembly cellular component organization cellular component biogenesis multicellular organism development cell junction organization cellular component assembly cell junction assembly anatomical structure development cellular process synapse organization cellular component organization or biogenesis synapse assembly animal gross anatomical part developmental process system development neuroblast proliferation cell population proliferation cellular developmental process generation of neurons neurogenesis cell differentiation neural precursor cell proliferation head development animal organ development brain development central nervous system development positive regulation of nervous system development axonogenesis regulation of cellular process cell projection organization regulation of cell differentiation regulation of neurogenesis neuron projection development regulation of cell development positive regulation of developmental process cell projection morphogenesis neuron differentiation neuron projection morphogenesis positive regulation of cell projection organization regulation of biological process regulation of cell projection organization positive regulation of cell development positive regulation of multicellular organismal process regulation of neuron projection development regulation of cellular component organization positive regulation of cellular component organization regulation of developmental process plasma membrane bounded cell projection morphogenesis positive regulation of biological process cell development cell morphogenesis regulation of nervous system development positive regulation of cell differentiation regulation of axonogenesis positive regulation of neurogenesis regulation of multicellular organismal process positive regulation of axonogenesis regulation of anatomical structure morphogenesis positive regulation of cellular process regulation of multicellular organismal development plasma membrane bounded cell projection organization biological regulation axon development cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis neuron development regulation of plasma membrane bounded cell projection organization regulation of cell motility regulation of neuron migration regulation of cell migration cell migration cell motility locomotion neuron migration regulation of locomotion positive regulation of neuron projection development regulation of cell shape regulation of cell morphogenesis regulation of biological quality embryonic epithelial tube formation chordate embryonic development tube formation embryo development epithelial tube formation tube morphogenesis primary neural tube formation embryo development ending in birth or egg hatching epithelial tube morphogenesis morphogenesis of embryonic epithelium epithelium development neural tube development tube development embryonic morphogenesis morphogenesis of an epithelium tissue development tissue morphogenesis neural tube closure neural tube formation anatomical structure formation involved in morphogenesis tube closure positive regulation of protein metabolic process positive regulation of translation protein biosynthetic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process protein metabolic process regulation of biosynthetic process regulation of protein metabolic process primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression regulation of translation regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process cellular response to stimulus cell surface receptor signaling pathway response to stimulus semaphorin-plexin signaling pathway signaling cell communication signal transduction protein phosphorylation regulation of protein modification process regulation of protein phosphorylation phosphorylation macromolecule modification phosphate-containing compound metabolic process regulation of phosphorylation protein modification process cell adhesion cell-cell adhesion homophilic cell-cell adhesion regulation of molecular function regulation of catalytic activity regulation of hydrolase activity regulation of GTPase activity localization import into cell transport receptor-mediated endocytosis endocytosis establishment of localization vesicle-mediated transport regulation of cell adhesion negative regulation of cellular process negative regulation of biological process negative regulation of cell adhesion	extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle cell surface cell periphery plasma membrane membrane protein-containing complex extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle cell surface cell periphery plasma membrane membrane protein-containing complex semaphorin receptor complex signaling receptor complex
A	Protein O-mannosyl-transferase TMEM260	catalytic activity, acting on a protein glycosyltransferase activity dolichyl-phosphate-mannose-protein mannosyltransferase activity mannosyltransferase activity transferase activity hexosyltransferase activity catalytic activity	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process protein maturation	membrane-bounded organelle intracellular anatomical structure organelle subcompartment membrane intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cytoplasm organelle membrane membrane-bounded organelle intracellular anatomical structure organelle subcompartment membrane intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cytoplasm organelle membrane endoplasmic reticulum membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR002909	IPT domain	Domain
B	IPR016201	PSI domain	Domain
B	IPR014756	Immunoglobulin E-set	Homologous Superfamily
B	IPR008936	Rho GTPase activation protein	Homologous Superfamily
B	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
B	IPR002165	Plexin repeat	Repeat
B	IPR057533	Plexin-B, PSI domain	Domain
B	IPR041019	Plexin, TIG domain 1	Domain
B	IPR031148	Plexin family	Family
B	IPR046800	Plexin, cytoplasmic RhoGTPase-binding domain	Domain
B	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
B	IPR013548	Plexin, cytoplasmic RasGAP domain	Domain
B	IPR036352	Sema domain superfamily	Homologous Superfamily
B	IPR001627	Sema domain	Domain
A	IPR021280	Protein O-mannosyl-transferase TMEM260, N-terminal domain	Domain
A	IPR052724	Glycosyltransferase 117 domain-containing protein	Family
A	IPR060492	TMEM260-associated domain 2	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B	: O15031	primitive neuroectodermal tumor astrocytic tumor bipolar disorder Duchenne muscular dystrophy glioblastoma malignant ependymoma myopathy ovarian cancer psoriasis atypical teratoid rhabdoid tumor cutaneous melanoma Emery-Dreifuss muscular dystrophy hypertensive disorder malignant pancreatic neoplasm oligodendroglioma primitive neuroectodermal tumor astrocytic tumor bipolar disorder Duchenne muscular dystrophy glioblastoma malignant ependymoma myopathy ovarian cancer psoriasis atypical teratoid rhabdoid tumor cutaneous melanoma Emery-Dreifuss muscular dystrophy hypertensive disorder malignant pancreatic neoplasm oligodendroglioma pancreatic ductal adenocarcinoma B-cell chronic lymphocytic leukemia diabetes mellitus endogenous depression juvenile dermatomyositis medulloblastoma osteosarcoma
A	: Q9NX78	attention deficit hyperactivity disorder, inattentive type large cell medulloblastoma ovarian cancer rheumatoid arthritis atypical teratoid rhabdoid tumor medulloblastoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia structural heart defects and renal anomalies syndrome intellectual disability osteosarcoma primitive neuroectodermal tumor

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9RQM | pdb_00009rqm

GT-C O-Mannosyltransferase TMEM260 co-purified with natural donor and in complex with acceptor peptide

External Resource: Annotation

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Pharos: Disease Associations Pharos Homepage Annotation