Annotations: 9S33

Crystal structure of inhibitor-bound Helicobacter pylori urease

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D, F, H, J B, D, F, H, J, L	PF00449	Urease alpha-subunit, N-terminal domain (Urease_alpha)	Urease alpha-subunit, N-terminal domain	The N-terminal domain is a composite domain and plays a major trimer stabilising role by contacting the catalytic domain of the symmetry related alpha-subunit.	Domain
B, D, F, H, J B, D, F, H, J, L	PF01979	Amidohydrolase family (Amidohydro_1)	Amidohydrolase family	This family of enzymes are a a large metal dependent hydrolase superfamily [1]. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisatio ...	This family of enzymes are a a large metal dependent hydrolase superfamily [1]. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source [2]. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyse the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit [3]. Dihydroorotases (EC:3.5.2.3) are also included [4-5].	Domain
A, C, E, G, I A, C, E, G, I, K	PF00699	Urease beta subunit (Urease_beta)	Urease beta subunit	This subunit is known as alpha in Heliobacter.	Domain
A, C, E, G, I A, C, E, G, I, K	PF00547	Urease, gamma subunit (Urease_gamma)	Urease, gamma subunit	Urease is a nickel-binding enzyme that catalyses the hydrolysis of urea to carbon dioxide and ammonia.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H, J B, D, F, H, J, L	Urease subunit beta	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides hydrolase activity urease activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds cation binding transition metal ion binding ion binding binding nickel cation binding metal ion binding small molecule binding	nitrogen cycle metabolic process catabolic process small molecule metabolic process metabolic process cellular process urea catabolic process small molecule catabolic process urea metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm
A, C, E, G, I A, C, E, G, I, K	Urease subunit alpha	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides hydrolase activity urease activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds cation binding transition metal ion binding ion binding binding nickel cation binding metal ion binding small molecule binding	nitrogen cycle metabolic process catabolic process small molecule metabolic process metabolic process cellular process urea catabolic process small molecule catabolic process urea metabolic process	protein-containing complex cellular anatomical structure intracellular anatomical structure catalytic complex cytoplasm urease complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H, J B, D, F, H, J, L	IPR011612	Urease alpha-subunit, N-terminal domain	Domain
B, D, F, H, J B, D, F, H, J, L	IPR029754	Urease nickel binding site	Binding Site
B, D, F, H, J B, D, F, H, J, L	IPR017950	Urease active site	Active Site
B, D, F, H, J B, D, F, H, J, L	IPR005848	Urease, alpha subunit	Family
B, D, F, H, J B, D, F, H, J, L	IPR006680	Amidohydrolase-related	Domain
B, D, F, H, J B, D, F, H, J, L	IPR011059	Metal-dependent hydrolase, composite domain superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L	IPR032466	Metal-dependent hydrolase	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L	IPR017951	Urease alpha subunit, C-terminal	Domain
A, C, E, G, I A, C, E, G, I, K	IPR002019	Urease, beta subunit-like	Family
A, C, E, G, I A, C, E, G, I, K	IPR050069	Urease subunit	Family
A, C, E, G, I A, C, E, G, I, K	IPR008223	Urease, gamma-beta subunit	Family
A, C, E, G, I A, C, E, G, I, K	IPR036461	Urease, beta subunit superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K	IPR002026	Urease, gamma/gamma-beta subunit	Family
A, C, E, G, I A, C, E, G, I, K	IPR036463	Urease, gamma subunit superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9S33 | pdb_00009s33

Crystal structure of inhibitor-bound Helicobacter pylori urease

External Resource: Annotation

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage